RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 CD163L1Q9NR16 1453 aa15.19■□□□□ 0.02
SHMT2-226ENST00000556825 HNRNPRO43390 633 aaKnown RBP15.19■□□□□ 0.02
SHMT2-226ENST00000556825 YEATS4O95619 227 aa15.19■□□□□ 0.02
SHMT2-226ENST00000556825 HNRNPCP07910 306 aaKnown RBP eCLIP15.19■□□□□ 0.02
SHMT2-226ENST00000556825 PRKAR2BP31323 418 aa15.19■□□□□ 0.02
SHMT2-226ENST00000556825 PEX5P50542 639 aa15.19■□□□□ 0.02
SHMT2-226ENST00000556825 VAV2P52735 878 aa15.19■□□□□ 0.02
SHMT2-226ENST00000556825 RHBDL3P58872 404 aa15.19■□□□□ 0.02
SHMT2-226ENST00000556825 NCALDP61601 193 aa15.19■□□□□ 0.02
SHMT2-226ENST00000556825 CYP26C1Q6V0L0 522 aa15.19■□□□□ 0.02
SHMT2-226ENST00000556825 LONP2Q86WA8 852 aa15.19■□□□□ 0.02
SHMT2-226ENST00000556825 NUTM2AQ8IVF1 878 aaPredicted RBP15.19■□□□□ 0.02
SHMT2-226ENST00000556825 LRRC43Q8N309 656 aa15.19■□□□□ 0.02
SHMT2-226ENST00000556825 ENOX1Q8TC92 643 aaKnown RBP15.19■□□□□ 0.02
SHMT2-226ENST00000556825 MAP4K1Q92918 833 aa15.19■□□□□ 0.02
SHMT2-226ENST00000556825 TIPINQ9BVW5 301 aa15.19■□□□□ 0.02
SHMT2-226ENST00000556825 PUS3Q9BZE2 481 aaKnown RBP15.19■□□□□ 0.02
SHMT2-226ENST00000556825 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.19■□□□□ 0.02
SHMT2-226ENST00000556825 LNPEPQ9UIQ6 1025 aa15.19■□□□□ 0.02
SHMT2-226ENST00000556825 NRXN3Q9Y4C0 1643 aa15.18■□□□□ 0.02
SHMT2-226ENST00000556825 CPSF1Q10570 1443 aaKnown RBP15.18■□□□□ 0.02
SHMT2-226ENST00000556825 SBNO1A3KN83 1393 aa15.18■□□□□ 0.02
SHMT2-226ENST00000556825 AFF2P51816 1311 aa15.18■□□□□ 0.02
SHMT2-226ENST00000556825 PNMA6EA0A0J9YXQ4 647 aa15.18■□□□□ 0.02
SHMT2-226ENST00000556825 TRIM43BA6NCK2 446 aa15.18■□□□□ 0.02
SHMT2-226ENST00000556825 A8MUI8 341 aa15.18■□□□□ 0.02
SHMT2-226ENST00000556825 IGF2BP3O00425 579 aaKnown RBP eCLIP15.18■□□□□ 0.02
SHMT2-226ENST00000556825 P4HA2O15460 535 aa15.18■□□□□ 0.02
SHMT2-226ENST00000556825 TROVE2P10155 538 aaKnown RBP eCLIP15.18■□□□□ 0.02
SHMT2-226ENST00000556825 TMOD1P28289 359 aa15.18■□□□□ 0.02
SHMT2-226ENST00000556825 PBX1P40424 430 aa15.18■□□□□ 0.02
SHMT2-226ENST00000556825 MSH2P43246 934 aa15.18■□□□□ 0.02
SHMT2-226ENST00000556825 CCT4P50991 539 aaKnown RBP15.18■□□□□ 0.02
SHMT2-226ENST00000556825 MAP7D1Q3KQU3 841 aa15.18■□□□□ 0.02
SHMT2-226ENST00000556825 FAM133BQ5BKY9 247 aaKnown RBP15.18■□□□□ 0.02
SHMT2-226ENST00000556825 NME8Q8N427 588 aa15.18■□□□□ 0.02
SHMT2-226ENST00000556825 FAM136AQ96C01 138 aa15.18■□□□□ 0.02
SHMT2-226ENST00000556825 NR1H4Q96RI1 486 aaPredicted RBP15.18■□□□□ 0.02
SHMT2-226ENST00000556825 CDK19Q9BWU1 502 aa15.18■□□□□ 0.02
SHMT2-226ENST00000556825 BACH1O14867 736 aa15.17■□□□□ 0.02
SHMT2-226ENST00000556825 LSM1O15116 133 aaKnown RBP15.17■□□□□ 0.02
SHMT2-226ENST00000556825 ZNF185O15231 689 aa15.17■□□□□ 0.02
SHMT2-226ENST00000556825 SPTLC2O15270 562 aa15.17■□□□□ 0.02
SHMT2-226ENST00000556825 SMARCA1P28370 1054 aa15.17■□□□□ 0.02
SHMT2-226ENST00000556825 CASP14P31944 242 aa15.17■□□□□ 0.02
SHMT2-226ENST00000556825 P3H1Q32P28 736 aa15.17■□□□□ 0.02
SHMT2-226ENST00000556825 TRPM8Q7Z2W7 1104 aa15.17■□□□□ 0.02
SHMT2-226ENST00000556825 CXorf38Q8TB03 319 aa15.17■□□□□ 0.02
SHMT2-226ENST00000556825 CHMP6Q96FZ7 201 aa15.17■□□□□ 0.02
SHMT2-226ENST00000556825 GBP5Q96PP8 586 aa15.17■□□□□ 0.02
SHMT2-226ENST00000556825 HAPLN3Q96S86 360 aa15.17■□□□□ 0.02
SHMT2-226ENST00000556825 IL1RAPL2Q9NP60 686 aa15.17■□□□□ 0.02
SHMT2-226ENST00000556825 TRIM10Q9UDY6 481 aa15.17■□□□□ 0.02
SHMT2-226ENST00000556825 R3HDM2Q9Y2K5 976 aaKnown RBP15.17■□□□□ 0.02
SHMT2-226ENST00000556825 WDR17Q8IZU2 1322 aa15.17■□□□□ 0.02
SHMT2-226ENST00000556825 ANO9A1A5B4 782 aa15.17■□□□□ 0.02
SHMT2-226ENST00000556825 ASAP2O43150 1006 aa15.17■□□□□ 0.02
SHMT2-226ENST00000556825 TEX33O43247 280 aa15.17■□□□□ 0.02
SHMT2-226ENST00000556825 KRT16P08779 473 aa15.17■□□□□ 0.02
SHMT2-226ENST00000556825 RARAP10276 462 aa15.17■□□□□ 0.02
SHMT2-226ENST00000556825 CD97P48960 835 aa15.17■□□□□ 0.02
SHMT2-226ENST00000556825 CEBPAP49715 358 aaPredicted RBP15.17■□□□□ 0.02
SHMT2-226ENST00000556825 ZNF131P52739 623 aa15.17■□□□□ 0.02
SHMT2-226ENST00000556825 LMNB2Q03252 620 aa15.17■□□□□ 0.02
SHMT2-226ENST00000556825 CNPY1Q3B7I2 92 aa15.17■□□□□ 0.02
SHMT2-226ENST00000556825 SMUG1Q53HV7 270 aa15.17■□□□□ 0.02
SHMT2-226ENST00000556825 THOC7Q6I9Y2 204 aaKnown RBP15.17■□□□□ 0.02
SHMT2-226ENST00000556825 LRIG3Q6UXM1 1119 aa15.17■□□□□ 0.02
SHMT2-226ENST00000556825 WAPLQ7Z5K2 1190 aa15.17■□□□□ 0.02
SHMT2-226ENST00000556825 CLMNQ96JQ2 1002 aa15.17■□□□□ 0.02
SHMT2-226ENST00000556825 INIPQ9NRY2 104 aa15.17■□□□□ 0.02
SHMT2-226ENST00000556825 ABCF2Q9UG63 623 aa15.17■□□□□ 0.02
SHMT2-226ENST00000556825 CHMP2BQ9UQN3 213 aa15.17■□□□□ 0.02
SHMT2-226ENST00000556825 TMEM2Q9UHN6 1383 aa15.17■□□□□ 0.02
SHMT2-226ENST00000556825 LRRC7Q96NW7 1537 aa15.16■□□□□ 0.02
SHMT2-226ENST00000556825 IQCJ-SCHIP1C9J366 451 aaPredicted RBP15.16■□□□□ 0.02
SHMT2-226ENST00000556825 FYB1O15117 783 aa15.16■□□□□ 0.02
SHMT2-226ENST00000556825 PPP2R2AP63151 447 aa15.16■□□□□ 0.02
SHMT2-226ENST00000556825 GSTM4Q03013 218 aa15.16■□□□□ 0.02
SHMT2-226ENST00000556825 PNOCQ13519 176 aa15.16■□□□□ 0.02
SHMT2-226ENST00000556825 SLC44A4Q53GD3 710 aa15.16■□□□□ 0.02
SHMT2-226ENST00000556825 CCDC129Q6ZRS4 1044 aa15.16■□□□□ 0.02
SHMT2-226ENST00000556825 STKLD1Q8NE28 680 aa15.16■□□□□ 0.02
SHMT2-226ENST00000556825 BHMTQ93088 406 aa15.16■□□□□ 0.02
SHMT2-226ENST00000556825 TRIM11Q96F44 468 aa15.16■□□□□ 0.02
SHMT2-226ENST00000556825 HIC2Q96JB3 615 aa15.16■□□□□ 0.02
SHMT2-226ENST00000556825 DDX21Q9NR30 783 aaKnown RBP eCLIP15.16■□□□□ 0.02
SHMT2-226ENST00000556825 ARHGEF3Q9NR81 526 aa15.16■□□□□ 0.02
SHMT2-226ENST00000556825 UBAP1Q9NZ09 502 aa15.16■□□□□ 0.02
SHMT2-226ENST00000556825 CTTNBP2NLQ9P2B4 639 aa15.16■□□□□ 0.02
SHMT2-226ENST00000556825 EFR3BQ9Y2G0 817 aa15.16■□□□□ 0.02
SHMT2-226ENST00000556825 COMMD3-BMI1R4GMX3 469 aa15.16■□□□□ 0.02
SHMT2-226ENST00000556825 GOLGA8AA7E2F4 631 aa15.16■□□□□ 0.02
SHMT2-226ENST00000556825 GNA14O95837 355 aa15.16■□□□□ 0.02
SHMT2-226ENST00000556825 FOSBP53539 338 aa15.16■□□□□ 0.02
SHMT2-226ENST00000556825 BIRC3Q13489 604 aa15.16■□□□□ 0.02
SHMT2-226ENST00000556825 TAF7Q15545 349 aaPredicted RBP15.16■□□□□ 0.02
SHMT2-226ENST00000556825 PUS10Q3MIT2 529 aaKnown RBP15.16■□□□□ 0.02
SHMT2-226ENST00000556825 PIGWQ7Z7B1 504 aa15.16■□□□□ 0.02
SHMT2-226ENST00000556825 ATP8B4Q8TF62 1192 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms