RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 PCDHA4Q9UN74 947 aa9.02□□□□□ -0.96
SYNE2-220ENST00000555612 ZBBXA8MT70 800 aa9.02□□□□□ -0.97
SYNE2-220ENST00000555612 GADD45BO75293 160 aaPredicted RBP9.02□□□□□ -0.97
SYNE2-220ENST00000555612 TSTA3Q13630 321 aaPredicted RBP9.02□□□□□ -0.97
SYNE2-220ENST00000555612 HADHQ16836 314 aaKnown RBP9.02□□□□□ -0.97
SYNE2-220ENST00000555612 ZNF827Q17R98 1081 aa9.02□□□□□ -0.97
SYNE2-220ENST00000555612 FAM160B2Q86V87 743 aa9.02□□□□□ -0.97
SYNE2-220ENST00000555612 EXOC8Q8IYI6 725 aa9.02□□□□□ -0.97
SYNE2-220ENST00000555612 TTLL11Q8NHH1 800 aa9.02□□□□□ -0.97
SYNE2-220ENST00000555612 MEIS1O00470 390 aa9.02□□□□□ -0.97
SYNE2-220ENST00000555612 ASNSP08243 561 aa9.02□□□□□ -0.97
SYNE2-220ENST00000555612 PTPREP23469 700 aa9.02□□□□□ -0.97
SYNE2-220ENST00000555612 MTX1Q13505 466 aa9.02□□□□□ -0.97
SYNE2-220ENST00000555612 RPS6KA1Q15418 735 aa9.02□□□□□ -0.97
SYNE2-220ENST00000555612 UBE2SQ16763 222 aa9.02□□□□□ -0.97
SYNE2-220ENST00000555612 PTPROQ16827 1216 aa9.02□□□□□ -0.97
SYNE2-220ENST00000555612 SLC27A3Q5K4L6 730 aa9.02□□□□□ -0.97
SYNE2-220ENST00000555612 NOP9Q86U38 636 aaKnown RBP9.02□□□□□ -0.97
SYNE2-220ENST00000555612 OTUD5Q96G74 571 aa9.02□□□□□ -0.97
SYNE2-220ENST00000555612 CBX8Q9HC52 389 aa9.02□□□□□ -0.97
SYNE2-220ENST00000555612 KCNJ18B7U540 433 aa9.02□□□□□ -0.97
SYNE2-220ENST00000555612 KIF11P52732 1056 aa9.02□□□□□ -0.97
SYNE2-220ENST00000555612 ZNF445P59923 1031 aa9.02□□□□□ -0.97
SYNE2-220ENST00000555612 MAPK8IP2Q13387 824 aaPredicted RBP9.02□□□□□ -0.97
SYNE2-220ENST00000555612 KCNJ12Q14500 433 aa9.02□□□□□ -0.97
SYNE2-220ENST00000555612 SYMPKQ92797 1274 aaKnown RBP9.02□□□□□ -0.97
SYNE2-220ENST00000555612 PUS7LQ9H0K6 701 aaKnown RBP9.02□□□□□ -0.97
SYNE2-220ENST00000555612 POLIQ9UNA4 740 aa9.02□□□□□ -0.97
SYNE2-220ENST00000555612 PDIA3P30101 505 aaKnown RBP9.02□□□□□ -0.97
SYNE2-220ENST00000555612 CDK8P49336 464 aa9.02□□□□□ -0.97
SYNE2-220ENST00000555612 MORC3Q14149 939 aa9.02□□□□□ -0.97
SYNE2-220ENST00000555612 VPS52Q8N1B4 723 aa9.02□□□□□ -0.97
SYNE2-220ENST00000555612 TAB3Q8N5C8 712 aaPredicted RBP9.02□□□□□ -0.97
SYNE2-220ENST00000555612 USP28Q96RU2 1077 aa9.02□□□□□ -0.97
SYNE2-220ENST00000555612 WDR11Q9BZH6 1224 aa9.02□□□□□ -0.97
SYNE2-220ENST00000555612 MYO3BQ8WXR4 1341 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 GOLGA6CA6NDK9 693 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 GOLGA6BA6NDN3 693 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 FAM196BA6NMK8 535 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 GOLGA6DP0CG33 693 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 PLCB4Q15147 1175 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 PDXDC2PQ6P474 469 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 TMTC1Q8IUR5 882 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 TBCKQ8TEA7 893 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 FAM149B1Q96BN6 582 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 TIGD1Q96MW7 591 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 PLEKHF1Q96S99 279 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 PIH1D3Q9NQM4 214 aaKnown RBP9.01□□□□□ -0.97
SYNE2-220ENST00000555612 GOLGA6AQ9NYA3 693 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 NOC2LQ9Y3T9 749 aaKnown RBP9.01□□□□□ -0.97
SYNE2-220ENST00000555612 TFAMQ00059 246 aaKnown RBP9.01□□□□□ -0.97
SYNE2-220ENST00000555612 RNF207Q6ZRF8 634 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 PDZD4Q76G19 769 aaPredicted RBP9.01□□□□□ -0.97
SYNE2-220ENST00000555612 TAOK1Q7L7X3 1001 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 SRGAP1Q7Z6B7 1085 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.01□□□□□ -0.97
SYNE2-220ENST00000555612 SKA2Q8WVK7 121 aaPredicted RBP9.01□□□□□ -0.97
SYNE2-220ENST00000555612 VPS37BQ9H9H4 285 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 CARMIL3Q8ND23 1372 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 GLI2P10070 1586 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 HECW2Q9P2P5 1572 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 IVLP07476 585 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 PSAPP07602 524 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 ATP5DP30049 168 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 ELF1P32519 619 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 HPDP32754 393 aaPredicted RBP9.01□□□□□ -0.97
SYNE2-220ENST00000555612 SH3RF3Q8TEJ3 882 aaPredicted RBP9.01□□□□□ -0.97
SYNE2-220ENST00000555612 IFIH1Q9BYX4 1025 aaKnown RBP9.01□□□□□ -0.97
SYNE2-220ENST00000555612 MIS12Q9H081 205 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 MAP3K4Q9Y6R4 1608 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 ESYT2A0FGR8 921 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 CHRNA5P30532 468 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 SETDB1Q15047 1291 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 NUCKS1Q9H1E3 243 aaKnown RBP9.01□□□□□ -0.97
SYNE2-220ENST00000555612 PLEKHA4Q9H4M7 779 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 SLITRK6Q9H5Y7 841 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 PCDHB4Q9Y5E5 795 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 JCADQ9P266 1359 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 SRGAP2CP0DJJ0 459 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 ADRA2BP18089 450 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 PPP2R3AQ06190 1150 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 SKIV2LQ15477 1246 aaKnown RBP9.01□□□□□ -0.97
SYNE2-220ENST00000555612 AFAP1L2Q8N4X5 818 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 SAMD15Q9P1V8 674 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 AXIN2Q9Y2T1 843 aa9.01□□□□□ -0.97
SYNE2-220ENST00000555612 IQCA1LA6NCM1 817 aa9□□□□□ -0.97
SYNE2-220ENST00000555612 POLR2FP61218 127 aaKnown RBP9□□□□□ -0.97
SYNE2-220ENST00000555612 PPARDQ03181 441 aa9□□□□□ -0.97
SYNE2-220ENST00000555612 LONRF2Q1L5Z9 754 aa9□□□□□ -0.97
SYNE2-220ENST00000555612 FAM83BQ5T0W9 1011 aa9□□□□□ -0.97
SYNE2-220ENST00000555612 CTAGE3PQ8IX95 158 aa9□□□□□ -0.97
SYNE2-220ENST00000555612 PCIF1Q9H4Z3 704 aa9□□□□□ -0.97
SYNE2-220ENST00000555612 RSPH14Q9UHP6 348 aa9□□□□□ -0.97
SYNE2-220ENST00000555612 FAM184BQ9ULE4 1060 aa9□□□□□ -0.97
SYNE2-220ENST00000555612 POLR2BP30876 1174 aaKnown RBP9□□□□□ -0.97
SYNE2-220ENST00000555612 LONP1P36776 959 aaKnown RBP9□□□□□ -0.97
SYNE2-220ENST00000555612 MYL7Q01449 175 aa9□□□□□ -0.97
SYNE2-220ENST00000555612 TMEM179Q6ZVK1 233 aa9□□□□□ -0.97
SYNE2-220ENST00000555612 ARFGAP2Q8N6H7 521 aa9□□□□□ -0.97
SYNE2-220ENST00000555612 C7orf31Q8N865 590 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms