RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 EIF4A3P38919 411 aaKnown RBP5.39□□□□□ -1.55
LIMA1-214ENST00000552783 GYG1P46976 350 aa5.39□□□□□ -1.55
LIMA1-214ENST00000552783 VAV2P52735 878 aa5.39□□□□□ -1.55
LIMA1-214ENST00000552783 GUCY2DQ02846 1103 aa5.39□□□□□ -1.55
LIMA1-214ENST00000552783 KIF5AQ12840 1032 aa5.39□□□□□ -1.55
LIMA1-214ENST00000552783 TRIM14Q14142 442 aa5.39□□□□□ -1.55
LIMA1-214ENST00000552783 PUM3Q15397 648 aaKnown RBP5.39□□□□□ -1.55
LIMA1-214ENST00000552783 ALX1Q15699 326 aa5.39□□□□□ -1.55
LIMA1-214ENST00000552783 PTGISQ16647 500 aa5.39□□□□□ -1.55
LIMA1-214ENST00000552783 AMOTL1Q8IY63 956 aa5.39□□□□□ -1.55
LIMA1-214ENST00000552783 FERMT2Q96AC1 680 aa5.39□□□□□ -1.55
LIMA1-214ENST00000552783 IFIH1Q9BYX4 1025 aaKnown RBP5.39□□□□□ -1.55
LIMA1-214ENST00000552783 EPN3Q9H201 632 aa5.39□□□□□ -1.55
LIMA1-214ENST00000552783 GOLPH3Q9H4A6 298 aa5.39□□□□□ -1.55
LIMA1-214ENST00000552783 SH2D4AQ9H788 454 aa5.39□□□□□ -1.55
LIMA1-214ENST00000552783 SLC40A1Q9NP59 571 aa5.39□□□□□ -1.55
LIMA1-214ENST00000552783 PPANQ9NQ55 473 aaKnown RBP5.39□□□□□ -1.55
LIMA1-214ENST00000552783 KLC4Q9NSK0 619 aa5.39□□□□□ -1.55
LIMA1-214ENST00000552783 DDX20Q9UHI6 824 aaKnown RBP5.39□□□□□ -1.55
LIMA1-214ENST00000552783 A0A1W2PQC6 194 aa5.39□□□□□ -1.55
LIMA1-214ENST00000552783 FAM170AA1A519 330 aa5.39□□□□□ -1.55
LIMA1-214ENST00000552783 H7C1D1 291 aa5.39□□□□□ -1.55
LIMA1-214ENST00000552783 PDE8AO60658 829 aa5.39□□□□□ -1.55
LIMA1-214ENST00000552783 ATP2C2O75185 946 aa5.39□□□□□ -1.55
LIMA1-214ENST00000552783 SKAP2O75563 359 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-214ENST00000552783 MCM3P25205 808 aa5.39□□□□□ -1.55
LIMA1-214ENST00000552783 PDE6BP35913 854 aa5.39□□□□□ -1.55
LIMA1-214ENST00000552783 EPHB4P54760 987 aa5.39□□□□□ -1.55
LIMA1-214ENST00000552783 KRT83P78385 493 aa5.39□□□□□ -1.55
LIMA1-214ENST00000552783 TROAPQ12815 778 aa5.39□□□□□ -1.55
LIMA1-214ENST00000552783 BYSLQ13895 437 aaKnown RBP5.39□□□□□ -1.55
LIMA1-214ENST00000552783 KLHDC7AQ5VTJ3 777 aa5.39□□□□□ -1.55
LIMA1-214ENST00000552783 DDX42Q86XP3 938 aaKnown RBP eCLIP5.39□□□□□ -1.55
LIMA1-214ENST00000552783 CSGALNACT2Q8N6G5 542 aa5.39□□□□□ -1.55
LIMA1-214ENST00000552783 CASKIN2Q8WXE0 1202 aa5.39□□□□□ -1.55
LIMA1-214ENST00000552783 LPIN2Q92539 896 aa5.39□□□□□ -1.55
LIMA1-214ENST00000552783 GPKOWQ92917 476 aaPredicted RBP eCLIP5.39□□□□□ -1.55
LIMA1-214ENST00000552783 RNF26Q9BY78 433 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-214ENST00000552783 KRT23Q9C075 422 aa5.39□□□□□ -1.55
LIMA1-214ENST00000552783 KANSL2Q9H9L4 492 aa5.39□□□□□ -1.55
LIMA1-214ENST00000552783 MCM8Q9UJA3 840 aa5.39□□□□□ -1.55
LIMA1-214ENST00000552783 PARP4Q9UKK3 1724 aaKnown RBP5.39□□□□□ -1.55
LIMA1-214ENST00000552783 ANO9A1A5B4 782 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 E7EVH7 732 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 PPP1R37O75864 691 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 FTCDO95954 541 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 NR1D1P20393 614 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 PAX7P23759 505 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 ARID4AP29374 1257 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-214ENST00000552783 FLT3P36888 993 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 SLC1A4P43007 532 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 KIF11P52732 1056 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 RASSF7Q02833 373 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 SPAG1Q07617 926 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 E2F5Q15329 346 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 C6orf89Q6UWU4 347 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 GBP6Q6ZN66 633 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 NLRP14Q86W24 1093 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 IQCA1Q86XH1 822 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 CEP57Q86XR8 500 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 GLIS3Q8NEA6 775 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 N4BP2L2Q92802 583 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-214ENST00000552783 RPGRIP1Q96KN7 1286 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 CNOT6LQ96LI5 555 aaKnown RBP5.38□□□□□ -1.55
LIMA1-214ENST00000552783 CCDC42Q96M95 316 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 EXOC1Q9NV70 894 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 HAUS2Q9NVX0 235 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 CNOT8Q9UFF9 292 aaKnown RBP5.38□□□□□ -1.55
LIMA1-214ENST00000552783 ZNF335Q9H4Z2 1342 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-214ENST00000552783 CCDC196A0A1B0GTZ2 297 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 HSF2BPO75031 334 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 HEXIM1O94992 359 aaKnown RBP5.38□□□□□ -1.55
LIMA1-214ENST00000552783 CYLC1P35663 651 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-214ENST00000552783 STAT6P42226 847 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 ZBED6P86452 979 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 DDR1Q08345 913 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 ITGB3BPQ13352 177 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-214ENST00000552783 CCDC152Q4G0S7 254 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 CCDC40Q4G0X9 1142 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 CAVIN4Q5BKX8 364 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 C8orf74Q6P047 294 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 KDM7AQ6ZMT4 941 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 ZNF662Q6ZS27 426 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 ZNF572Q7Z3I7 529 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-214ENST00000552783 CAVIN3Q969G5 261 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 NEUROG2Q9H2A3 272 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 VCPKMTQ9H867 229 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 TFCP2L1Q9NZI6 479 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 BAZ2AQ9UIF9 1905 aaKnown RBP5.38□□□□□ -1.55
LIMA1-214ENST00000552783 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.38□□□□□ -1.55
LIMA1-214ENST00000552783 KIF1AQ12756 1690 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 TSPY2A6NKD2 308 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 LRRC53A6NM62 1247 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 PRPF3O43395 683 aaKnown RBP5.38□□□□□ -1.55
LIMA1-214ENST00000552783 OPA1O60313 960 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 ECHS1P30084 290 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 CDC25CP30307 473 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 MDH1P40925 334 aaKnown RBP5.38□□□□□ -1.55
LIMA1-214ENST00000552783 DNM2P50570 870 aa5.38□□□□□ -1.55
LIMA1-214ENST00000552783 NLRP5P59047 1200 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms