RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 ANO3Q9BYT9 981 aa20.17■□□□□ 0.82
CLIP1-215ENST00000541108 MAF1Q9H063 256 aa20.17■□□□□ 0.82
CLIP1-215ENST00000541108 RAVER2Q9HCJ3 691 aaKnown RBP20.17■□□□□ 0.82
CLIP1-215ENST00000541108 DDX19AQ9NUU7 478 aaKnown RBP20.17■□□□□ 0.82
CLIP1-215ENST00000541108 AGTPBP1Q9UPW5 1226 aa20.17■□□□□ 0.82
CLIP1-215ENST00000541108 FAM237AA0A1B0GTK4 181 aa20.16■□□□□ 0.82
CLIP1-215ENST00000541108 SPDYE16A6NNV3 312 aaPredicted RBP20.16■□□□□ 0.82
CLIP1-215ENST00000541108 CCNT1O60563 726 aaKnown RBP20.16■□□□□ 0.82
CLIP1-215ENST00000541108 GCFC2P16383 781 aaKnown RBP20.16■□□□□ 0.82
CLIP1-215ENST00000541108 PRPHP41219 470 aa20.16■□□□□ 0.82
CLIP1-215ENST00000541108 FAM160A1Q05DH4 1040 aa20.16■□□□□ 0.82
CLIP1-215ENST00000541108 PABPC4Q13310 644 aaKnown RBP eCLIP20.16■□□□□ 0.82
CLIP1-215ENST00000541108 GADL1Q6ZQY3 521 aa20.16■□□□□ 0.82
CLIP1-215ENST00000541108 MB21D1Q8N884 522 aa20.16■□□□□ 0.82
CLIP1-215ENST00000541108 FSIP1Q8NA03 581 aa20.16■□□□□ 0.82
CLIP1-215ENST00000541108 ENGASEQ8NFI3 743 aa20.16■□□□□ 0.82
CLIP1-215ENST00000541108 CRYGNQ8WXF5 182 aa20.16■□□□□ 0.82
CLIP1-215ENST00000541108 GZF1Q9H116 711 aaPredicted RBP20.16■□□□□ 0.82
CLIP1-215ENST00000541108 CFBP00751 764 aa20.16■□□□□ 0.82
CLIP1-215ENST00000541108 CCDC183Q5T5S1 534 aa20.16■□□□□ 0.82
CLIP1-215ENST00000541108 CST9Q5W186 159 aa20.16■□□□□ 0.82
CLIP1-215ENST00000541108 RESP18Q5W5W9 173 aa20.16■□□□□ 0.82
CLIP1-215ENST00000541108 SHC4Q6S5L8 630 aa20.16■□□□□ 0.82
CLIP1-215ENST00000541108 MOXD1Q6UVY6 613 aa20.16■□□□□ 0.82
CLIP1-215ENST00000541108 LBX2Q6XYB7 198 aa20.16■□□□□ 0.82
CLIP1-215ENST00000541108 CLEC4DQ8WXI8 215 aa20.16■□□□□ 0.82
CLIP1-215ENST00000541108 DACT1Q9NYF0 836 aa20.16■□□□□ 0.82
CLIP1-215ENST00000541108 ZNF214Q9UL59 606 aaPredicted RBP20.16■□□□□ 0.82
CLIP1-215ENST00000541108 EDIL3O43854 480 aa20.15■□□□□ 0.82
CLIP1-215ENST00000541108 NR1I2O75469 434 aa20.15■□□□□ 0.82
CLIP1-215ENST00000541108 LETM1O95202 739 aaPredicted RBP20.15■□□□□ 0.82
CLIP1-215ENST00000541108 ALAS1P13196 640 aa20.15■□□□□ 0.82
CLIP1-215ENST00000541108 HSD17B4P51659 736 aa20.15■□□□□ 0.82
CLIP1-215ENST00000541108 SNW1Q13573 536 aaKnown RBP20.15■□□□□ 0.82
CLIP1-215ENST00000541108 MOGSQ13724 837 aa20.15■□□□□ 0.82
CLIP1-215ENST00000541108 CLIC6Q96NY7 704 aa20.15■□□□□ 0.82
CLIP1-215ENST00000541108 NEMFO60524 1076 aa20.14■□□□□ 0.81
CLIP1-215ENST00000541108 TAL1P17542 331 aaPredicted RBP20.14■□□□□ 0.81
CLIP1-215ENST00000541108 GJA5P36382 358 aa20.14■□□□□ 0.81
CLIP1-215ENST00000541108 SREBF1P36956 1147 aa20.14■□□□□ 0.81
CLIP1-215ENST00000541108 TKFCQ3LXA3 575 aa20.14■□□□□ 0.81
CLIP1-215ENST00000541108 ZSCAN23Q3MJ62 389 aa20.14■□□□□ 0.81
CLIP1-215ENST00000541108 WNK4Q96J92 1243 aa20.14■□□□□ 0.81
CLIP1-215ENST00000541108 TEX13BQ9BXU2 312 aa20.14■□□□□ 0.81
CLIP1-215ENST00000541108 GOLPH3LQ9H4A5 285 aa20.14■□□□□ 0.81
CLIP1-215ENST00000541108 HPSEQ9Y251 543 aa20.14■□□□□ 0.81
CLIP1-215ENST00000541108 MYH7BA7E2Y1 1941 aa20.14■□□□□ 0.81
CLIP1-215ENST00000541108 TRPM7Q96QT4 1865 aa20.14■□□□□ 0.81
CLIP1-215ENST00000541108 CYP3A7-CYP3A51PA0A087WV96 503 aa20.13■□□□□ 0.81
CLIP1-215ENST00000541108 A0A1B0GVL5 298 aa20.13■□□□□ 0.81
CLIP1-215ENST00000541108 ZBTB48P10074 688 aaPredicted RBP20.13■□□□□ 0.81
CLIP1-215ENST00000541108 CYP3A7P24462 503 aa20.13■□□□□ 0.81
CLIP1-215ENST00000541108 HOXA13P31271 388 aaPredicted RBP20.13■□□□□ 0.81
CLIP1-215ENST00000541108 GTF2A2P52657 109 aa20.13■□□□□ 0.81
CLIP1-215ENST00000541108 TMEM132BQ14DG7 1078 aa20.13■□□□□ 0.81
CLIP1-215ENST00000541108 FMR1NBQ8N0W7 255 aaPredicted RBP20.13■□□□□ 0.81
CLIP1-215ENST00000541108 TBC1D5Q92609 795 aa20.13■□□□□ 0.81
CLIP1-215ENST00000541108 TRERF1Q96PN7 1200 aa20.13■□□□□ 0.81
CLIP1-215ENST00000541108 P2RX7Q99572 595 aaKnown RBP20.13■□□□□ 0.81
CLIP1-215ENST00000541108 EHMT1Q9H9B1 1298 aa20.13■□□□□ 0.81
CLIP1-215ENST00000541108 GPBP1L1Q9HC44 474 aaPredicted RBP20.13■□□□□ 0.81
CLIP1-215ENST00000541108 MRVI1Q9Y6F6 885 aa20.13■□□□□ 0.81
CLIP1-215ENST00000541108 COL11A1P12107 1806 aaPredicted RBP20.13■□□□□ 0.81
CLIP1-215ENST00000541108 CYP3A4P08684 503 aa20.13■□□□□ 0.81
CLIP1-215ENST00000541108 NDUFA8P51970 172 aa20.13■□□□□ 0.81
CLIP1-215ENST00000541108 IRX3P78415 501 aaPredicted RBP20.13■□□□□ 0.81
CLIP1-215ENST00000541108 ARHGAP4P98171 946 aa20.13■□□□□ 0.81
CLIP1-215ENST00000541108 DTHD1Q6ZMT9 781 aa20.13■□□□□ 0.81
CLIP1-215ENST00000541108 CSRNP2Q9H175 543 aa20.13■□□□□ 0.81
CLIP1-215ENST00000541108 FAM13BQ9NYF5 915 aa20.13■□□□□ 0.81
CLIP1-215ENST00000541108 RABGAP1Q9Y3P9 1069 aa20.13■□□□□ 0.81
CLIP1-215ENST00000541108 OR52Z1P0C646 297 aa20.12■□□□□ 0.81
CLIP1-215ENST00000541108 CETPP11597 493 aa20.12■□□□□ 0.81
CLIP1-215ENST00000541108 PFKFB1P16118 471 aa20.12■□□□□ 0.81
CLIP1-215ENST00000541108 OSBPP22059 807 aa20.12■□□□□ 0.81
CLIP1-215ENST00000541108 LONP1P36776 959 aaKnown RBP20.12■□□□□ 0.81
CLIP1-215ENST00000541108 STAT3P40763 770 aa20.12■□□□□ 0.81
CLIP1-215ENST00000541108 SNRNP48Q6IEG0 339 aaKnown RBP20.12■□□□□ 0.81
CLIP1-215ENST00000541108 MS4A4AQ96JQ5 239 aa20.12■□□□□ 0.81
CLIP1-215ENST00000541108 MBOAT7Q96N66 472 aa20.12■□□□□ 0.81
CLIP1-215ENST00000541108 ASCC2Q9H1I8 757 aaPredicted RBP20.12■□□□□ 0.81
CLIP1-215ENST00000541108 TMEM60Q9H2L4 133 aa20.12■□□□□ 0.81
CLIP1-215ENST00000541108 SLC45A1Q9Y2W3 748 aa20.12■□□□□ 0.81
CLIP1-215ENST00000541108 VWA3AA6NCI4 1184 aa20.11■□□□□ 0.81
CLIP1-215ENST00000541108 NFIBO00712 420 aa20.11■□□□□ 0.81
CLIP1-215ENST00000541108 KINO60870 393 aaKnown RBP20.11■□□□□ 0.81
CLIP1-215ENST00000541108 CIITAP33076 1130 aa20.11■□□□□ 0.81
CLIP1-215ENST00000541108 ZNF445P59923 1031 aa20.11■□□□□ 0.81
CLIP1-215ENST00000541108 GRIN1Q05586 938 aa20.11■□□□□ 0.81
CLIP1-215ENST00000541108 GPAT2Q6NUI2 795 aa20.11■□□□□ 0.81
CLIP1-215ENST00000541108 TIGD1Q96MW7 591 aa20.11■□□□□ 0.81
CLIP1-215ENST00000541108 MTMR9Q96QG7 549 aa20.11■□□□□ 0.81
CLIP1-215ENST00000541108 NUP62CLQ9H1M0 184 aa20.11■□□□□ 0.81
CLIP1-215ENST00000541108 RIPK3Q9Y572 518 aa20.11■□□□□ 0.81
CLIP1-215ENST00000541108 ZNF202O95125 648 aa20.1■□□□□ 0.81
CLIP1-215ENST00000541108 TDP2O95551 362 aa20.1■□□□□ 0.81
CLIP1-215ENST00000541108 SYKP43405 635 aa20.1■□□□□ 0.81
CLIP1-215ENST00000541108 GSE1Q14687 1217 aa20.1■□□□□ 0.81
CLIP1-215ENST00000541108 MUM1L1Q5H9M0 696 aa20.1■□□□□ 0.81
CLIP1-215ENST00000541108 SPRYD7Q5W111 196 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms