RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 PRKAG3Q9UGI9 489 aa9.76□□□□□ -0.85
CHD4-208ENST00000540960 MTUS1Q9ULD2 1270 aa9.76□□□□□ -0.85
CHD4-208ENST00000540960 SYNRGQ9UMZ2 1314 aa9.76□□□□□ -0.85
CHD4-208ENST00000540960 CEP250Q9BV73 2442 aa9.75□□□□□ -0.85
CHD4-208ENST00000540960 CDK5RAP2Q96SN8 1893 aa9.75□□□□□ -0.85
CHD4-208ENST00000540960 C19orf81C9J6K1 198 aa9.75□□□□□ -0.85
CHD4-208ENST00000540960 PATL2C9JE40 543 aaKnown RBP9.75□□□□□ -0.85
CHD4-208ENST00000540960 GPAA1O43292 621 aa9.75□□□□□ -0.85
CHD4-208ENST00000540960 CYP2E1P05181 493 aaPredicted RBP9.75□□□□□ -0.85
CHD4-208ENST00000540960 LDHCP07864 332 aa9.75□□□□□ -0.85
CHD4-208ENST00000540960 ZNF865P0CJ78 1059 aaPredicted RBP9.75□□□□□ -0.85
CHD4-208ENST00000540960 PDE6AP16499 860 aa9.75□□□□□ -0.85
CHD4-208ENST00000540960 NCLP19338 710 aaKnown RBP9.75□□□□□ -0.85
CHD4-208ENST00000540960 MCM5P33992 734 aa9.75□□□□□ -0.85
CHD4-208ENST00000540960 AK2P54819 239 aa9.75□□□□□ -0.85
CHD4-208ENST00000540960 RASGRF1Q13972 1273 aa9.75□□□□□ -0.85
CHD4-208ENST00000540960 PKN1Q16512 942 aa9.75□□□□□ -0.85
CHD4-208ENST00000540960 PUS10Q3MIT2 529 aaKnown RBP9.75□□□□□ -0.85
CHD4-208ENST00000540960 ZNF589Q86UQ0 364 aaPredicted RBP9.75□□□□□ -0.85
CHD4-208ENST00000540960 SPRYD3Q8NCJ5 442 aa9.75□□□□□ -0.85
CHD4-208ENST00000540960 NCOA7Q8NI08 942 aa9.75□□□□□ -0.85
CHD4-208ENST00000540960 VTI1AQ96AJ9 217 aa9.75□□□□□ -0.85
CHD4-208ENST00000540960 MAML3Q96JK9 1138 aa9.75□□□□□ -0.85
CHD4-208ENST00000540960 IRF2BPLQ9H1B7 796 aa9.75□□□□□ -0.85
CHD4-208ENST00000540960 ISY1Q9ULR0 285 aaKnown RBP9.75□□□□□ -0.85
CHD4-208ENST00000540960 MROH7Q68CQ1 1323 aa9.75□□□□□ -0.85
CHD4-208ENST00000540960 SIPA1L1O43166 1804 aa9.75□□□□□ -0.85
CHD4-208ENST00000540960 FAM208BQ5VWN6 2430 aa9.74□□□□□ -0.85
CHD4-208ENST00000540960 USP17L10C9JJH3 530 aa9.74□□□□□ -0.85
CHD4-208ENST00000540960 APPP05067 770 aa9.74□□□□□ -0.85
CHD4-208ENST00000540960 SLC3A2P08195 630 aaKnown RBP9.74□□□□□ -0.85
CHD4-208ENST00000540960 DSG3P32926 999 aa9.74□□□□□ -0.85
CHD4-208ENST00000540960 HMGN5P82970 282 aaKnown RBP9.74□□□□□ -0.85
CHD4-208ENST00000540960 SART3Q15020 963 aaKnown RBP9.74□□□□□ -0.85
CHD4-208ENST00000540960 CPLX2Q6PUV4 134 aaKnown RBP9.74□□□□□ -0.85
CHD4-208ENST00000540960 TMCO2Q7Z6W1 182 aaPredicted RBP9.74□□□□□ -0.85
CHD4-208ENST00000540960 TMTC2Q8N394 836 aa9.74□□□□□ -0.85
CHD4-208ENST00000540960 OSBP2Q969R2 916 aa9.74□□□□□ -0.85
CHD4-208ENST00000540960 NOL10Q9BSC4 688 aaKnown RBP9.74□□□□□ -0.85
CHD4-208ENST00000540960 MOV10L1Q9BXT6 1211 aaKnown RBP9.74□□□□□ -0.85
CHD4-208ENST00000540960 KRT23Q9C075 422 aa9.74□□□□□ -0.85
CHD4-208ENST00000540960 IL25Q9H293 177 aa9.74□□□□□ -0.85
CHD4-208ENST00000540960 ELP1O95163 1332 aa9.74□□□□□ -0.85
CHD4-208ENST00000540960 ZNF532Q9HCE3 1301 aa9.74□□□□□ -0.85
CHD4-208ENST00000540960 TET1Q8NFU7 2136 aa9.73□□□□□ -0.85
CHD4-208ENST00000540960 MYO7AQ13402 2215 aa9.73□□□□□ -0.85
CHD4-208ENST00000540960 MOXD2PA6NHM9 499 aa9.73□□□□□ -0.85
CHD4-208ENST00000540960 KDM4AO75164 1064 aa9.73□□□□□ -0.85
CHD4-208ENST00000540960 CD2BP2O95400 341 aaKnown RBP9.73□□□□□ -0.85
CHD4-208ENST00000540960 LDHBP07195 334 aaKnown RBP9.73□□□□□ -0.85
CHD4-208ENST00000540960 ASGR1P07306 291 aa9.73□□□□□ -0.85
CHD4-208ENST00000540960 CYP21A2P08686 494 aa9.73□□□□□ -0.85
CHD4-208ENST00000540960 ZXDAP98168 799 aa9.73□□□□□ -0.85
CHD4-208ENST00000540960 ZYXQ15942 572 aaKnown RBP9.73□□□□□ -0.85
CHD4-208ENST00000540960 CATSPERGQ6ZRH7 1159 aa9.73□□□□□ -0.85
CHD4-208ENST00000540960 EP400NLQ6ZTU2 488 aa9.73□□□□□ -0.85
CHD4-208ENST00000540960 DEFB128Q7Z7B8 93 aa9.73□□□□□ -0.85
CHD4-208ENST00000540960 HERC6Q8IVU3 1022 aa9.73□□□□□ -0.85
CHD4-208ENST00000540960 AMOTL1Q8IY63 956 aa9.73□□□□□ -0.85
CHD4-208ENST00000540960 TNPO1Q92973 898 aaKnown RBP9.73□□□□□ -0.85
CHD4-208ENST00000540960 NKD2Q969F2 451 aaPredicted RBP9.73□□□□□ -0.85
CHD4-208ENST00000540960 ZNF274Q96GC6 653 aaPredicted RBP9.73□□□□□ -0.85
CHD4-208ENST00000540960 TMEM87BQ96K49 555 aa9.73□□□□□ -0.85
CHD4-208ENST00000540960 AGBL1Q96MI9 1066 aa9.73□□□□□ -0.85
CHD4-208ENST00000540960 GLT1D1Q96MS3 346 aa9.73□□□□□ -0.85
CHD4-208ENST00000540960 NOC4LQ9BVI4 516 aaKnown RBP9.73□□□□□ -0.85
CHD4-208ENST00000540960 NAPBQ9H115 298 aa9.73□□□□□ -0.85
CHD4-208ENST00000540960 RAI14Q9P0K7 980 aa9.73□□□□□ -0.85
CHD4-208ENST00000540960 SALL1Q9NSC2 1324 aa9.73□□□□□ -0.85
CHD4-208ENST00000540960 SIP14410 1827 aa9.72□□□□□ -0.85
CHD4-208ENST00000540960 A0A0U1RQG5 324 aaPredicted RBP9.72□□□□□ -0.85
CHD4-208ENST00000540960 SPDYE16A6NNV3 312 aaPredicted RBP9.72□□□□□ -0.85
CHD4-208ENST00000540960 USP17L15C9J2P7 530 aa9.72□□□□□ -0.85
CHD4-208ENST00000540960 USP17L13C9JLJ4 530 aa9.72□□□□□ -0.85
CHD4-208ENST00000540960 USP17L11C9JVI0 530 aa9.72□□□□□ -0.85
CHD4-208ENST00000540960 USP17L18D6R9N7 530 aa9.72□□□□□ -0.85
CHD4-208ENST00000540960 USP17L22D6RA61 530 aa9.72□□□□□ -0.85
CHD4-208ENST00000540960 USP17L17D6RBQ6 530 aa9.72□□□□□ -0.85
CHD4-208ENST00000540960 USP17L19D6RCP7 530 aa9.72□□□□□ -0.85
CHD4-208ENST00000540960 USP17L20D6RJB6 530 aa9.72□□□□□ -0.85
CHD4-208ENST00000540960 E7EWF7 191 aa9.72□□□□□ -0.85
CHD4-208ENST00000540960 M0R2C6 588 aa9.72□□□□□ -0.85
CHD4-208ENST00000540960 TLR3O15455 904 aaKnown RBP9.72□□□□□ -0.85
CHD4-208ENST00000540960 CDKL5O76039 1030 aa9.72□□□□□ -0.85
CHD4-208ENST00000540960 BAG3O95817 575 aa9.72□□□□□ -0.85
CHD4-208ENST00000540960 PDGFBP01127 241 aaPredicted RBP9.72□□□□□ -0.85
CHD4-208ENST00000540960 FGAP02671 866 aa9.72□□□□□ -0.85
CHD4-208ENST00000540960 PLCG2P16885 1265 aa9.72□□□□□ -0.85
CHD4-208ENST00000540960 ERCC3P19447 782 aa9.72□□□□□ -0.85
CHD4-208ENST00000540960 USP17L24Q0WX57 530 aa9.72□□□□□ -0.85
CHD4-208ENST00000540960 PPP2R5BQ15173 497 aa9.72□□□□□ -0.85
CHD4-208ENST00000540960 NAA16Q6N069 864 aaPredicted RBP9.72□□□□□ -0.85
CHD4-208ENST00000540960 RPUSD2Q8IZ73 545 aaKnown RBP9.72□□□□□ -0.85
CHD4-208ENST00000540960 MAGEB6Q8N7X4 407 aa9.72□□□□□ -0.85
CHD4-208ENST00000540960 ASIC4Q96FT7 647 aa9.72□□□□□ -0.85
CHD4-208ENST00000540960 STRBPQ96SI9 672 aaKnown RBP9.72□□□□□ -0.85
CHD4-208ENST00000540960 TRPV6Q9H1D0 765 aa9.72□□□□□ -0.85
CHD4-208ENST00000540960 PIH1D3Q9NQM4 214 aaKnown RBP9.72□□□□□ -0.85
CHD4-208ENST00000540960 MAGEB6P1A0A0J9YX57 407 aa9.71□□□□□ -0.86
CHD4-208ENST00000540960 TCRBV5S4A2TA0A5A2 114 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms