RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 AMPD2Q01433 879 aa7.52□□□□□ -1.21
USP28-207ENST00000538475 TNP2Q05952 138 aa7.52□□□□□ -1.21
USP28-207ENST00000538475 SPAG1Q07617 926 aa7.52□□□□□ -1.21
USP28-207ENST00000538475 MCMDC2Q4G0Z9 681 aa7.52□□□□□ -1.21
USP28-207ENST00000538475 NBPF6Q5VWK0 638 aa7.52□□□□□ -1.21
USP28-207ENST00000538475 RESP18Q5W5W9 173 aa7.52□□□□□ -1.21
USP28-207ENST00000538475 ISM2Q6H9L7 571 aa7.52□□□□□ -1.21
USP28-207ENST00000538475 RCSD1Q6JBY9 416 aa7.52□□□□□ -1.21
USP28-207ENST00000538475 KCNV1Q6PIU1 500 aa7.52□□□□□ -1.21
USP28-207ENST00000538475 ARMC9Q7Z3E5 817 aa7.52□□□□□ -1.21
USP28-207ENST00000538475 KIAA1328Q86T90 577 aa7.52□□□□□ -1.21
USP28-207ENST00000538475 APLFQ8IW19 511 aaPredicted RBP7.52□□□□□ -1.21
USP28-207ENST00000538475 IGSF22Q8N9C0 903 aa7.52□□□□□ -1.21
USP28-207ENST00000538475 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP7.52□□□□□ -1.21
USP28-207ENST00000538475 CCDC97Q96F63 343 aaPredicted RBP7.52□□□□□ -1.21
USP28-207ENST00000538475 NGLY1Q96IV0 654 aa7.52□□□□□ -1.21
USP28-207ENST00000538475 NBPF4Q96M43 638 aa7.52□□□□□ -1.21
USP28-207ENST00000538475 MOV10L1Q9BXT6 1211 aaKnown RBP7.52□□□□□ -1.21
USP28-207ENST00000538475 PHACTR1Q9C0D0 580 aa7.52□□□□□ -1.21
USP28-207ENST00000538475 HAUS4Q9H6D7 363 aa7.52□□□□□ -1.21
USP28-207ENST00000538475 HOMER3Q9NSC5 361 aa7.52□□□□□ -1.21
USP28-207ENST00000538475 GDF2Q9UK05 429 aaPredicted RBP7.52□□□□□ -1.21
USP28-207ENST00000538475 WWC3Q9ULE0 1092 aa7.52□□□□□ -1.21
USP28-207ENST00000538475 FAM184BQ9ULE4 1060 aa7.52□□□□□ -1.21
USP28-207ENST00000538475 GPC6Q9Y625 555 aaPredicted RBP7.52□□□□□ -1.21
USP28-207ENST00000538475 NRXN3Q9Y4C0 1643 aa7.52□□□□□ -1.21
USP28-207ENST00000538475 PALLDQ8WX93 1383 aa7.51□□□□□ -1.21
USP28-207ENST00000538475 AFDNP55196 1824 aaKnown RBP7.51□□□□□ -1.21
USP28-207ENST00000538475 A0A0D9SFI3 127 aa7.51□□□□□ -1.21
USP28-207ENST00000538475 ANKRD33BA6NCL7 494 aa7.51□□□□□ -1.21
USP28-207ENST00000538475 LRRIQ3A6PVS8 624 aaPredicted RBP7.51□□□□□ -1.21
USP28-207ENST00000538475 H0YHG0 523 aa7.51□□□□□ -1.21
USP28-207ENST00000538475 N4BP1O75113 896 aaKnown RBP7.51□□□□□ -1.21
USP28-207ENST00000538475 CTDNEP1O95476 244 aa7.51□□□□□ -1.21
USP28-207ENST00000538475 ATP1A3P13637 1013 aa7.51□□□□□ -1.21
USP28-207ENST00000538475 PRLRP16471 622 aa7.51□□□□□ -1.21
USP28-207ENST00000538475 CD33P20138 364 aa7.51□□□□□ -1.21
USP28-207ENST00000538475 PBX1P40424 430 aa7.51□□□□□ -1.21
USP28-207ENST00000538475 LIG3P49916 1009 aa7.51□□□□□ -1.21
USP28-207ENST00000538475 CDR1P51861 262 aa7.51□□□□□ -1.21
USP28-207ENST00000538475 HIRAP54198 1017 aaPredicted RBP7.51□□□□□ -1.21
USP28-207ENST00000538475 SAFB2Q14151 953 aaKnown RBP eCLIP7.51□□□□□ -1.21
USP28-207ENST00000538475 MTHFSDQ2M296 383 aaKnown RBP7.51□□□□□ -1.21
USP28-207ENST00000538475 ZNF569Q5MCW4 686 aa7.51□□□□□ -1.21
USP28-207ENST00000538475 C1orf53Q5VUE5 145 aa7.51□□□□□ -1.21
USP28-207ENST00000538475 PAPD7Q5XG87 772 aaKnown RBP7.51□□□□□ -1.21
USP28-207ENST00000538475 EMBQ6PCB8 327 aa7.51□□□□□ -1.21
USP28-207ENST00000538475 CYP26C1Q6V0L0 522 aa7.51□□□□□ -1.21
USP28-207ENST00000538475 CCNI2Q6ZMN8 369 aaPredicted RBP7.51□□□□□ -1.21
USP28-207ENST00000538475 TOGARAM2Q6ZUX3 1019 aa7.51□□□□□ -1.21
USP28-207ENST00000538475 TRAPPC11Q7Z392 1133 aa7.51□□□□□ -1.21
USP28-207ENST00000538475 ZNF572Q7Z3I7 529 aaPredicted RBP7.51□□□□□ -1.21
USP28-207ENST00000538475 AACSQ86V21 672 aa7.51□□□□□ -1.21
USP28-207ENST00000538475 MAB21L3Q8N8X9 362 aa7.51□□□□□ -1.21
USP28-207ENST00000538475 BCAS4Q8TDM0 211 aa7.51□□□□□ -1.21
USP28-207ENST00000538475 KAT2BQ92831 832 aa7.51□□□□□ -1.21
USP28-207ENST00000538475 ZBTB9Q96C00 473 aa7.51□□□□□ -1.21
USP28-207ENST00000538475 NUDT16Q96DE0 195 aaKnown RBP7.51□□□□□ -1.21
USP28-207ENST00000538475 IQCDQ96DY2 449 aa7.51□□□□□ -1.21
USP28-207ENST00000538475 SCARF2Q96GP6 870 aaPredicted RBP7.51□□□□□ -1.21
USP28-207ENST00000538475 C8orf76Q96K31 380 aa7.51□□□□□ -1.21
USP28-207ENST00000538475 FAM227BQ96M60 508 aa7.51□□□□□ -1.21
USP28-207ENST00000538475 FAM210AQ96ND0 272 aa7.51□□□□□ -1.21
USP28-207ENST00000538475 ANKRD27Q96NW4 1050 aa7.51□□□□□ -1.21
USP28-207ENST00000538475 VCPKMTQ9H867 229 aa7.51□□□□□ -1.21
USP28-207ENST00000538475 ATP6V0A4Q9HBG4 840 aa7.51□□□□□ -1.21
USP28-207ENST00000538475 FANCLQ9NW38 375 aa7.51□□□□□ -1.21
USP28-207ENST00000538475 ANKIB1Q9P2G1 1089 aa7.51□□□□□ -1.21
USP28-207ENST00000538475 ODF2LQ9ULJ1 636 aa7.51□□□□□ -1.21
USP28-207ENST00000538475 TMEM94Q12767 1356 aa7.5□□□□□ -1.21
USP28-207ENST00000538475 GOLGA6BA6NDN3 693 aa7.5□□□□□ -1.21
USP28-207ENST00000538475 LRRC10BA6NIK2 292 aa7.5□□□□□ -1.21
USP28-207ENST00000538475 C2CD2LO14523 706 aa7.5□□□□□ -1.21
USP28-207ENST00000538475 OIP5O43482 229 aa7.5□□□□□ -1.21
USP28-207ENST00000538475 MFAP3LO75121 409 aa7.5□□□□□ -1.21
USP28-207ENST00000538475 RASSF9O75901 435 aa7.5□□□□□ -1.21
USP28-207ENST00000538475 CDKL5O76039 1030 aa7.5□□□□□ -1.21
USP28-207ENST00000538475 FAM157BP0CG42 384 aa7.5□□□□□ -1.21
USP28-207ENST00000538475 PDIA3P30101 505 aaKnown RBP7.5□□□□□ -1.21
USP28-207ENST00000538475 CCT5P48643 541 aa7.5□□□□□ -1.21
USP28-207ENST00000538475 SARSP49591 514 aaKnown RBP7.5□□□□□ -1.21
USP28-207ENST00000538475 PLCD1P51178 756 aa7.5□□□□□ -1.21
USP28-207ENST00000538475 ACTN3Q08043 901 aaPredicted RBP7.5□□□□□ -1.21
USP28-207ENST00000538475 STK3Q13188 491 aa7.5□□□□□ -1.21
USP28-207ENST00000538475 GLE1Q53GS7 698 aaKnown RBP7.5□□□□□ -1.21
USP28-207ENST00000538475 SAMD5Q5TGI4 173 aa7.5□□□□□ -1.21
USP28-207ENST00000538475 CD302Q8IX05 232 aa7.5□□□□□ -1.21
USP28-207ENST00000538475 MMGT1Q8N4V1 131 aa7.5□□□□□ -1.21
USP28-207ENST00000538475 ARFGAP2Q8N6H7 521 aa7.5□□□□□ -1.21
USP28-207ENST00000538475 PDILTQ8N807 584 aa7.5□□□□□ -1.21
USP28-207ENST00000538475 EIF1ADQ8N9N8 165 aaKnown RBP7.5□□□□□ -1.21
USP28-207ENST00000538475 GALNT6Q8NCL4 622 aa7.5□□□□□ -1.21
USP28-207ENST00000538475 CCHCR1Q8TD31 782 aa7.5□□□□□ -1.21
USP28-207ENST00000538475 DPF2Q92785 391 aa7.5□□□□□ -1.21
USP28-207ENST00000538475 ZKSCAN4Q969J2 545 aaPredicted RBP7.5□□□□□ -1.21
USP28-207ENST00000538475 HOOK2Q96ED9 719 aa7.5□□□□□ -1.21
USP28-207ENST00000538475 TRIM6Q9C030 488 aaPredicted RBP7.5□□□□□ -1.21
USP28-207ENST00000538475 EPC1Q9H2F5 836 aa7.5□□□□□ -1.21
USP28-207ENST00000538475 MRPL44Q9H9J2 332 aaKnown RBP7.5□□□□□ -1.21
USP28-207ENST00000538475 KLC4Q9NSK0 619 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms