RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 GLT1D1Q96MS3 346 aa13.13□□□□□ -0.31
LIMCH1-214ENST00000512228 ZSCAN10Q96SZ4 725 aaPredicted RBP13.13□□□□□ -0.31
LIMCH1-214ENST00000512228 DSCC1Q9BVC3 393 aa13.13□□□□□ -0.31
LIMCH1-214ENST00000512228 SENP2Q9HC62 589 aa13.13□□□□□ -0.31
LIMCH1-214ENST00000512228 DIAPH3Q9NSV4 1193 aa13.13□□□□□ -0.31
LIMCH1-214ENST00000512228 COL20A1Q9P218 1284 aa13.13□□□□□ -0.31
LIMCH1-214ENST00000512228 STXBP5LQ9Y2K9 1186 aa13.13□□□□□ -0.31
LIMCH1-214ENST00000512228 MYH6P13533 1939 aa13.13□□□□□ -0.31
LIMCH1-214ENST00000512228 RBM47A0AV96 593 aaKnown RBP13.12□□□□□ -0.31
LIMCH1-214ENST00000512228 PCP11498 1178 aaKnown RBP13.12□□□□□ -0.31
LIMCH1-214ENST00000512228 CSF2RAP15509 400 aa13.12□□□□□ -0.31
LIMCH1-214ENST00000512228 CYP2C18P33260 490 aa13.12□□□□□ -0.31
LIMCH1-214ENST00000512228 COL9A3Q14050 684 aaPredicted RBP13.12□□□□□ -0.31
LIMCH1-214ENST00000512228 USH1GQ495M9 461 aa13.12□□□□□ -0.31
LIMCH1-214ENST00000512228 TTC22Q5TAA0 569 aa13.12□□□□□ -0.31
LIMCH1-214ENST00000512228 RNF207Q6ZRF8 634 aa13.12□□□□□ -0.31
LIMCH1-214ENST00000512228 ADGRF4Q8IZF3 695 aa13.12□□□□□ -0.31
LIMCH1-214ENST00000512228 ESR2Q92731 530 aa13.12□□□□□ -0.31
LIMCH1-214ENST00000512228 CDX2Q99626 313 aaPredicted RBP13.12□□□□□ -0.31
LIMCH1-214ENST00000512228 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.12□□□□□ -0.31
LIMCH1-214ENST00000512228 PPP1R12CQ9BZL4 782 aa13.12□□□□□ -0.31
LIMCH1-214ENST00000512228 TRPV6Q9H1D0 765 aa13.12□□□□□ -0.31
LIMCH1-214ENST00000512228 VAT1LQ9HCJ6 419 aa13.12□□□□□ -0.31
LIMCH1-214ENST00000512228 BAZ2BQ9UIF8 2168 aaKnown RBP13.12□□□□□ -0.31
LIMCH1-214ENST00000512228 A0A0U1RQG5 324 aaPredicted RBP13.11□□□□□ -0.31
LIMCH1-214ENST00000512228 FPGSQ05932 587 aa13.11□□□□□ -0.31
LIMCH1-214ENST00000512228 ITGA7Q13683 1181 aa13.11□□□□□ -0.31
LIMCH1-214ENST00000512228 SEC23AQ15436 765 aa13.11□□□□□ -0.31
LIMCH1-214ENST00000512228 DUSP28Q4G0W2 176 aa13.11□□□□□ -0.31
LIMCH1-214ENST00000512228 MFSD5Q6N075 450 aa13.11□□□□□ -0.31
LIMCH1-214ENST00000512228 SKAP1Q86WV1 359 aa13.11□□□□□ -0.31
LIMCH1-214ENST00000512228 PNMA1Q8ND90 353 aa13.11□□□□□ -0.31
LIMCH1-214ENST00000512228 TAAR1Q96RJ0 339 aa13.11□□□□□ -0.31
LIMCH1-214ENST00000512228 WDR11Q9BZH6 1224 aa13.11□□□□□ -0.31
LIMCH1-214ENST00000512228 RNF41Q9H4P4 317 aaPredicted RBP13.11□□□□□ -0.31
LIMCH1-214ENST00000512228 JMJD4Q9H9V9 463 aa13.11□□□□□ -0.31
LIMCH1-214ENST00000512228 OPLAHO14841 1288 aa13.1□□□□□ -0.31
LIMCH1-214ENST00000512228 B4GALT4O60513 344 aa13.1□□□□□ -0.31
LIMCH1-214ENST00000512228 PPP1R11O60927 126 aaPredicted RBP13.1□□□□□ -0.31
LIMCH1-214ENST00000512228 ARIH2O95376 493 aa13.1□□□□□ -0.31
LIMCH1-214ENST00000512228 EDNRBP24530 442 aa13.1□□□□□ -0.31
LIMCH1-214ENST00000512228 CHMLP26374 656 aa13.1□□□□□ -0.31
LIMCH1-214ENST00000512228 PBX2P40425 430 aa13.1□□□□□ -0.31
LIMCH1-214ENST00000512228 MFAP1P55081 439 aaKnown RBP13.1□□□□□ -0.31
LIMCH1-214ENST00000512228 CDC37Q16543 378 aaPredicted RBP13.1□□□□□ -0.31
LIMCH1-214ENST00000512228 TMEM240Q5SV17 173 aa13.1□□□□□ -0.31
LIMCH1-214ENST00000512228 STOX1Q6ZVD7 989 aa13.1□□□□□ -0.31
LIMCH1-214ENST00000512228 ZNF365Q70YC5 407 aa13.1□□□□□ -0.31
LIMCH1-214ENST00000512228 RNPC3Q96LT9 517 aaKnown RBP13.1□□□□□ -0.31
LIMCH1-214ENST00000512228 AP5M1Q9H0R1 490 aa13.1□□□□□ -0.31
LIMCH1-214ENST00000512228 SPC25Q9HBM1 224 aa13.1□□□□□ -0.31
LIMCH1-214ENST00000512228 VTA1Q9NP79 307 aa13.1□□□□□ -0.31
LIMCH1-214ENST00000512228 Q9Y3F1 56 aa13.1□□□□□ -0.31
LIMCH1-214ENST00000512228 TNKSO95271 1327 aa13.1□□□□□ -0.31
LIMCH1-214ENST00000512228 SCN5AQ14524 2016 aa13.1□□□□□ -0.31
LIMCH1-214ENST00000512228 MYH7BA7E2Y1 1941 aa13.09□□□□□ -0.31
LIMCH1-214ENST00000512228 CYP21A2P08686 494 aa13.09□□□□□ -0.31
LIMCH1-214ENST00000512228 SMAD3P84022 425 aaKnown RBP13.09□□□□□ -0.31
LIMCH1-214ENST00000512228 QRICH1Q2TAL8 776 aa13.09□□□□□ -0.31
LIMCH1-214ENST00000512228 RASIP1Q5U651 963 aa13.09□□□□□ -0.31
LIMCH1-214ENST00000512228 CHST3Q7LGC8 479 aa13.09□□□□□ -0.31
LIMCH1-214ENST00000512228 SYTL5Q8TDW5 730 aaPredicted RBP13.09□□□□□ -0.31
LIMCH1-214ENST00000512228 CXXC1Q9P0U4 656 aaPredicted RBP13.09□□□□□ -0.31
LIMCH1-214ENST00000512228 WDR19Q8NEZ3 1342 aa13.09□□□□□ -0.31
LIMCH1-214ENST00000512228 GBF1Q92538 1859 aa13.08□□□□□ -0.32
LIMCH1-214ENST00000512228 KIAA1217Q5T5P2 1943 aa13.08□□□□□ -0.32
LIMCH1-214ENST00000512228 LAMA2P24043 3122 aaKnown RBP13.08□□□□□ -0.32
LIMCH1-214ENST00000512228 HIP1O00291 1037 aa13.08□□□□□ -0.32
LIMCH1-214ENST00000512228 DLL1O00548 723 aa13.08□□□□□ -0.32
LIMCH1-214ENST00000512228 PURAQ00577 322 aaKnown RBP13.08□□□□□ -0.32
LIMCH1-214ENST00000512228 GRIN2CQ14957 1233 aa13.08□□□□□ -0.32
LIMCH1-214ENST00000512228 IMMTQ16891 758 aaKnown RBP13.08□□□□□ -0.32
LIMCH1-214ENST00000512228 GPATCH4Q5T3I0 446 aaKnown RBP13.08□□□□□ -0.32
LIMCH1-214ENST00000512228 ZNF697Q5TEC3 545 aa13.08□□□□□ -0.32
LIMCH1-214ENST00000512228 CCDC62Q6P9F0 684 aa13.08□□□□□ -0.32
LIMCH1-214ENST00000512228 IQCA1Q86XH1 822 aa13.08□□□□□ -0.32
LIMCH1-214ENST00000512228 MYLIPQ8WY64 445 aa13.08□□□□□ -0.32
LIMCH1-214ENST00000512228 WNT8AQ9H1J5 351 aa13.08□□□□□ -0.32
LIMCH1-214ENST00000512228 KAT14Q9H8E8 782 aa13.08□□□□□ -0.32
LIMCH1-214ENST00000512228 TRMT13Q9NUP7 481 aaKnown RBP13.08□□□□□ -0.32
LIMCH1-214ENST00000512228 ADD3Q9UEY8 706 aaKnown RBP13.08□□□□□ -0.32
LIMCH1-214ENST00000512228 TRIP12Q14669 1992 aaPredicted RBP13.08□□□□□ -0.32
LIMCH1-214ENST00000512228 SCN10AQ9Y5Y9 1956 aa13.07□□□□□ -0.32
LIMCH1-214ENST00000512228 PALM3A6NDB9 673 aaPredicted RBP13.07□□□□□ -0.32
LIMCH1-214ENST00000512228 MYL3P08590 195 aa13.07□□□□□ -0.32
LIMCH1-214ENST00000512228 CYP2C9P11712 490 aa13.07□□□□□ -0.32
LIMCH1-214ENST00000512228 CCL23P55773 120 aa13.07□□□□□ -0.32
LIMCH1-214ENST00000512228 RGS22Q8NE09 1264 aa13.07□□□□□ -0.32
LIMCH1-214ENST00000512228 ZFP91Q96JP5 570 aaPredicted RBP13.07□□□□□ -0.32
LIMCH1-214ENST00000512228 NOC4LQ9BVI4 516 aaKnown RBP13.07□□□□□ -0.32
LIMCH1-214ENST00000512228 GPHNQ9NQX3 736 aaPredicted RBP13.07□□□□□ -0.32
LIMCH1-214ENST00000512228 CTNNA3Q9UI47 895 aa13.07□□□□□ -0.32
LIMCH1-214ENST00000512228 MAD2L2Q9UI95 211 aa13.07□□□□□ -0.32
LIMCH1-214ENST00000512228 MYO9BQ13459 2157 aa13.07□□□□□ -0.32
LIMCH1-214ENST00000512228 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.06□□□□□ -0.32
LIMCH1-214ENST00000512228 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.06□□□□□ -0.32
LIMCH1-214ENST00000512228 CYTH3O43739 400 aa13.06□□□□□ -0.32
LIMCH1-214ENST00000512228 PARP1P09874 1014 aaKnown RBP13.06□□□□□ -0.32
LIMCH1-214ENST00000512228 ANTXR2P58335 489 aa13.06□□□□□ -0.32
LIMCH1-214ENST00000512228 PDE4DQ08499 809 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms