RNA–Protein interactions for RNA: ENST00000481484.1

VPS13D-208, Transcript of vacuolar protein sorting 13 homolog D, human

TSL 5

Gene VPS13D, Length 360 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS13D-208	ENST00000481484	MX1	P20591	662 aa		4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484	CDK8	P49336	464 aa		4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484	PDE4B	Q07343	736 aa		4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484	KCTD2	Q14681	263 aa		4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484	SNX17	Q15036	470 aa		4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484	LRIT3	Q3SXY7	679 aa		4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484	C1orf53	Q5VUE5	145 aa		4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484	DPP9	Q86TI2	863 aa		4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484	BPHL	Q86WA6	291 aa	Predicted RBP	4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484	RIOX2	Q8IUF8	465 aa		4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484	TDH	Q8IZJ6	230 aa		4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484	SLC44A5	Q8NCS7	719 aa		4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484	GMCL1P1	Q8NEA9	526 aa		4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484	FAM174A	Q8TBP5	190 aa		4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484	GDF15	Q99988	308 aa		4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484	SLF1	Q9BQI6	1058 aa		4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484	MOV10L1	Q9BXT6	1211 aa	Known RBP	4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484	MKNK2	Q9HBH9	465 aa		4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484	ATP13A2	Q9NQ11	1180 aa		4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484	BTBD7	Q9P203	1132 aa		4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484	PRKAG2	Q9UGJ0	569 aa		4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484	ADAMTS5	Q9UNA0	930 aa		4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484	MROH7	Q68CQ1	1323 aa		4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484	SCN10A	Q9Y5Y9	1956 aa		4.93	□□□□□ -1.62
VPS13D-208	ENST00000481484	KIAA1217	Q5T5P2	1943 aa		4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	LOC102724159	A0A0B4J2E5	919 aa		4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	USP17L12	C9JPN9	530 aa		4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	USP17L21	D6R901	530 aa		4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	VWA5A	O00534	786 aa		4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	CYP2D6	P10635	497 aa		4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	RARB	P10826	455 aa		4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	EEF2	P13639	858 aa	Known RBP	4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	AKR1A1	P14550	325 aa		4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	RASA1	P20936	1047 aa		4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	GRM5	P41594	1212 aa		4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	MAGEA10	P43363	369 aa	Predicted RBP	4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	MFAP1	P55081	439 aa	Known RBP	4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	RRP1	P56182	461 aa	Known RBP	4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	PLS1	Q14651	629 aa		4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	PWP2	Q15269	919 aa	Known RBP	4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	TKFC	Q3LXA3	575 aa		4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	CTR9	Q6PD62	1173 aa		4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	RNF180	Q86T96	592 aa		4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	FAM160B2	Q86V87	743 aa		4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	NCAPG2	Q86XI2	1143 aa		4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	PRPF38A	Q8NAV1	312 aa	Known RBP	4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	CHST13	Q8NET6	341 aa		4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	LRRN4	Q8WUT4	740 aa		4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	ATG4C	Q96DT6	458 aa		4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	GMCL1	Q96IK5	515 aa		4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	MAML3	Q96JK9	1138 aa		4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	STRBP	Q96SI9	672 aa	Known RBP	4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	MMP19	Q99542	508 aa		4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	LBHD1	Q9BQE6	289 aa	Predicted RBP	4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	FSD1	Q9BTV5	496 aa		4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	C1QTNF2	Q9BXJ5	285 aa		4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	SEZ6L	Q9BYH1	1024 aa		4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	UBE2O	Q9C0C9	1292 aa	Known RBP	4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	PUS7L	Q9H0K6	701 aa	Known RBP	4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	NAPB	Q9H115	298 aa		4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	FEM1B	Q9UK73	627 aa		4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	ZNF214	Q9UL59	606 aa	Predicted RBP	4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	CNPY2	Q9Y2B0	182 aa		4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	CTDP1	Q9Y5B0	961 aa	Predicted RBP	4.92	□□□□□ -1.62
VPS13D-208	ENST00000481484	CHD9	Q3L8U1	2897 aa		4.91	□□□□□ -1.62
VPS13D-208	ENST00000481484	CHD7	Q9P2D1	2997 aa		4.91	□□□□□ -1.62
VPS13D-208	ENST00000481484	EYS	Q5T1H1	3165 aa		4.91	□□□□□ -1.62
VPS13D-208	ENST00000481484	TMEM265	A0A087WTH1	108 aa		4.91	□□□□□ -1.62
VPS13D-208	ENST00000481484	IGKV6D-41	A0A0C4DH26	115 aa		4.91	□□□□□ -1.62
VPS13D-208	ENST00000481484	GSG1L2	A8MUP6	293 aa		4.91	□□□□□ -1.62
VPS13D-208	ENST00000481484	PLA2G6	O60733	806 aa		4.91	□□□□□ -1.62
VPS13D-208	ENST00000481484	NDUFB10	O96000	172 aa		4.91	□□□□□ -1.62
VPS13D-208	ENST00000481484	TSPY3	P0CV98	308 aa		4.91	□□□□□ -1.62
VPS13D-208	ENST00000481484	TSPY8	P0CW00	308 aa		4.91	□□□□□ -1.62
VPS13D-208	ENST00000481484	CST5	P28325	142 aa	Predicted RBP	4.91	□□□□□ -1.62
VPS13D-208	ENST00000481484	CNGA1	P29973	690 aa		4.91	□□□□□ -1.62
VPS13D-208	ENST00000481484	CCND3	P30281	292 aa	Predicted RBP	4.91	□□□□□ -1.62
VPS13D-208	ENST00000481484	STAT3	P40763	770 aa		4.91	□□□□□ -1.62
VPS13D-208	ENST00000481484	STAT2	P52630	851 aa		4.91	□□□□□ -1.62
VPS13D-208	ENST00000481484	RTP1	P59025	263 aa		4.91	□□□□□ -1.62
VPS13D-208	ENST00000481484	HDAC1	Q13547	482 aa	Predicted RBP	4.91	□□□□□ -1.62
VPS13D-208	ENST00000481484	TMEM132B	Q14DG7	1078 aa		4.91	□□□□□ -1.62
VPS13D-208	ENST00000481484	CCL14	Q16627	93 aa		4.91	□□□□□ -1.62
VPS13D-208	ENST00000481484	FAM83B	Q5T0W9	1011 aa		4.91	□□□□□ -1.62
VPS13D-208	ENST00000481484	FAM109B	Q6ICB4	259 aa	Predicted RBP	4.91	□□□□□ -1.62
VPS13D-208	ENST00000481484	SNRNP48	Q6IEG0	339 aa	Known RBP	4.91	□□□□□ -1.62
VPS13D-208	ENST00000481484	RCSD1	Q6JBY9	416 aa		4.91	□□□□□ -1.62
VPS13D-208	ENST00000481484	CCDC174	Q6PII3	467 aa		4.91	□□□□□ -1.62
VPS13D-208	ENST00000481484	CLEC10A	Q8IUN9	316 aa		4.91	□□□□□ -1.62
VPS13D-208	ENST00000481484	SPICE1	Q8N0Z3	855 aa		4.91	□□□□□ -1.62
VPS13D-208	ENST00000481484	IL27	Q8NEV9	243 aa		4.91	□□□□□ -1.62
VPS13D-208	ENST00000481484	REPS2	Q8NFH8	660 aa		4.91	□□□□□ -1.62
VPS13D-208	ENST00000481484	NEDD1	Q8NHV4	660 aa		4.91	□□□□□ -1.62
VPS13D-208	ENST00000481484	NUP133	Q8WUM0	1156 aa		4.91	□□□□□ -1.62
VPS13D-208	ENST00000481484	EVI5L	Q96CN4	794 aa		4.91	□□□□□ -1.62
VPS13D-208	ENST00000481484	DYNLL2	Q96FJ2	89 aa		4.91	□□□□□ -1.62
VPS13D-208	ENST00000481484	TINF2	Q9BSI4	451 aa		4.91	□□□□□ -1.62
VPS13D-208	ENST00000481484	TSEN34	Q9BSV6	310 aa	Known RBP	4.91	□□□□□ -1.62
VPS13D-208	ENST00000481484	KLF16	Q9BXK1	252 aa	Predicted RBP	4.91	□□□□□ -1.62

Retrieved 100 of 20,778 RNA–protein pairs in 93.2 ms