RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 INTS13Q9NVM9 706 aa15.37■□□□□ 0.05
CCDC88A-211ENST00000471947 PAXBP1Q9Y5B6 917 aa15.37■□□□□ 0.05
CCDC88A-211ENST00000471947 SPTLC3Q9NUV7 552 aa15.37■□□□□ 0.05
CCDC88A-211ENST00000471947 LUC7L2Q9Y383 392 aaKnown RBP15.37■□□□□ 0.05
CCDC88A-211ENST00000471947 POTEFA5A3E0 1075 aa15.36■□□□□ 0.05
CCDC88A-211ENST00000471947 POTEIP0CG38 1075 aa15.36■□□□□ 0.05
CCDC88A-211ENST00000471947 POTEGQ6S5H5 508 aa15.36■□□□□ 0.05
CCDC88A-211ENST00000471947 POTEEQ6S8J3 1075 aa15.36■□□□□ 0.05
CCDC88A-211ENST00000471947 ENOX1Q8TC92 643 aaKnown RBP15.36■□□□□ 0.05
CCDC88A-211ENST00000471947 JDP2Q8WYK2 163 aa15.36■□□□□ 0.05
CCDC88A-211ENST00000471947 CRAMP1Q96RY5 1269 aa15.36■□□□□ 0.05
CCDC88A-211ENST00000471947 CHP1Q99653 195 aa15.36■□□□□ 0.05
CCDC88A-211ENST00000471947 MTRQ99707 1265 aa15.36■□□□□ 0.05
CCDC88A-211ENST00000471947 RMND1Q9NWS8 449 aa15.36■□□□□ 0.05
CCDC88A-211ENST00000471947 CCDC175P0C221 793 aa15.36■□□□□ 0.05
CCDC88A-211ENST00000471947 PCP11498 1178 aaKnown RBP15.36■□□□□ 0.05
CCDC88A-211ENST00000471947 APOBEC3HQ6NTF7 200 aaKnown RBP15.36■□□□□ 0.05
CCDC88A-211ENST00000471947 ZNF771Q7L3S4 317 aaPredicted RBP15.36■□□□□ 0.05
CCDC88A-211ENST00000471947 GSDMAQ96QA5 445 aa15.36■□□□□ 0.05
CCDC88A-211ENST00000471947 MED15Q96RN5 788 aa15.36■□□□□ 0.05
CCDC88A-211ENST00000471947 PDCL3Q9H2J4 239 aa15.36■□□□□ 0.05
CCDC88A-211ENST00000471947 PALM3A6NDB9 673 aaPredicted RBP15.35■□□□□ 0.05
CCDC88A-211ENST00000471947 AKR1B10O60218 316 aa15.35■□□□□ 0.05
CCDC88A-211ENST00000471947 GPBP1Q86WP2 473 aa15.35■□□□□ 0.05
CCDC88A-211ENST00000471947 COL14A1Q05707 1796 aaKnown RBP15.35■□□□□ 0.05
CCDC88A-211ENST00000471947 LONP1P36776 959 aaKnown RBP15.35■□□□□ 0.05
CCDC88A-211ENST00000471947 DNAAF5Q86Y56 855 aa15.35■□□□□ 0.05
CCDC88A-211ENST00000471947 JADE2Q9NQC1 790 aa15.35■□□□□ 0.05
CCDC88A-211ENST00000471947 PI4KBQ9UBF8 816 aa15.35■□□□□ 0.05
CCDC88A-211ENST00000471947 USP54Q70EL1 1684 aa15.35■□□□□ 0.05
CCDC88A-211ENST00000471947 CLIC2O15247 247 aa15.35■□□□□ 0.05
CCDC88A-211ENST00000471947 SEC31AO94979 1220 aaKnown RBP15.35■□□□□ 0.05
CCDC88A-211ENST00000471947 ALAS1P13196 640 aa15.35■□□□□ 0.05
CCDC88A-211ENST00000471947 PPP4CP60510 307 aa15.35■□□□□ 0.05
CCDC88A-211ENST00000471947 AMPD3Q01432 767 aa15.35■□□□□ 0.05
CCDC88A-211ENST00000471947 TICAM2Q86XR7 235 aa15.35■□□□□ 0.05
CCDC88A-211ENST00000471947 RGL1Q9NZL6 768 aa15.35■□□□□ 0.05
CCDC88A-211ENST00000471947 USP8P40818 1118 aa15.34■□□□□ 0.05
CCDC88A-211ENST00000471947 APBA1Q02410 837 aa15.34■□□□□ 0.05
CCDC88A-211ENST00000471947 CTTNQ14247 550 aaKnown RBP15.34■□□□□ 0.05
CCDC88A-211ENST00000471947 PHACTR2O75167 634 aa15.34■□□□□ 0.05
CCDC88A-211ENST00000471947 ZMYND10O75800 440 aa15.34■□□□□ 0.05
CCDC88A-211ENST00000471947 SHMT1P34896 483 aa15.34■□□□□ 0.05
CCDC88A-211ENST00000471947 FBXO11Q86XK2 927 aa15.34■□□□□ 0.05
CCDC88A-211ENST00000471947 TJP1Q07157 1748 aa15.34■□□□□ 0.05
CCDC88A-211ENST00000471947 PPP1R3GB7ZBB8 358 aa15.34■□□□□ 0.05
CCDC88A-211ENST00000471947 ABL1P00519 1130 aa15.34■□□□□ 0.05
CCDC88A-211ENST00000471947 KSR1Q8IVT5 923 aa15.34■□□□□ 0.05
CCDC88A-211ENST00000471947 CNOT6LQ96LI5 555 aaKnown RBP15.34■□□□□ 0.05
CCDC88A-211ENST00000471947 TUBGCP2Q9BSJ2 902 aa15.34■□□□□ 0.05
CCDC88A-211ENST00000471947 PCDHB13Q9Y5F0 798 aa15.34■□□□□ 0.05
CCDC88A-211ENST00000471947 MYH13Q9UKX3 1938 aa15.33■□□□□ 0.05
CCDC88A-211ENST00000471947 PSMD14O00487 310 aa15.33■□□□□ 0.05
CCDC88A-211ENST00000471947 IL1R1P14778 569 aa15.33■□□□□ 0.05
CCDC88A-211ENST00000471947 DPEP1P16444 411 aa15.33■□□□□ 0.05
CCDC88A-211ENST00000471947 ETF1P62495 437 aaKnown RBP15.33■□□□□ 0.05
CCDC88A-211ENST00000471947 MDM2Q00987 491 aaPredicted RBP15.33■□□□□ 0.05
CCDC88A-211ENST00000471947 ZNF543Q08ER8 600 aa15.33■□□□□ 0.05
CCDC88A-211ENST00000471947 KCNK18Q7Z418 384 aa15.33■□□□□ 0.05
CCDC88A-211ENST00000471947 ZNF710Q8N1W2 664 aa15.33■□□□□ 0.05
CCDC88A-211ENST00000471947 LARP4BQ92615 738 aaKnown RBP15.33■□□□□ 0.05
CCDC88A-211ENST00000471947 GLIS2Q9BZE0 524 aaPredicted RBP15.33■□□□□ 0.05
CCDC88A-211ENST00000471947 HSD3B7Q9H2F3 369 aa15.33■□□□□ 0.05
CCDC88A-211ENST00000471947 MRPL44Q9H9J2 332 aaKnown RBP15.33■□□□□ 0.05
CCDC88A-211ENST00000471947 IMPACTQ9P2X3 320 aa15.33■□□□□ 0.05
CCDC88A-211ENST00000471947 ATRNO75882 1429 aa15.33■□□□□ 0.05
CCDC88A-211ENST00000471947 ARHGAP6O43182 974 aa15.33■□□□□ 0.04
CCDC88A-211ENST00000471947 NDUFB10O96000 172 aa15.33■□□□□ 0.04
CCDC88A-211ENST00000471947 KRT26Q7Z3Y9 468 aa15.33■□□□□ 0.04
CCDC88A-211ENST00000471947 DDX12PQ92771 950 aa15.33■□□□□ 0.04
CCDC88A-211ENST00000471947 CNKSR1Q969H4 720 aa15.33■□□□□ 0.04
CCDC88A-211ENST00000471947 NCBP1Q09161 790 aaKnown RBP15.33■□□□□ 0.04
CCDC88A-211ENST00000471947 CCDC122Q5T0U0 273 aa15.33■□□□□ 0.04
CCDC88A-211ENST00000471947 RRAGAQ7L523 313 aa15.33■□□□□ 0.04
CCDC88A-211ENST00000471947 SAMD7Q7Z3H4 446 aa15.33■□□□□ 0.04
CCDC88A-211ENST00000471947 PODNQ7Z5L7 613 aa15.33■□□□□ 0.04
CCDC88A-211ENST00000471947 HDAC9Q9UKV0 1011 aa15.33■□□□□ 0.04
CCDC88A-211ENST00000471947 NBPF9Q3BBW0 867 aa15.32■□□□□ 0.04
CCDC88A-211ENST00000471947 ANKRD40Q6AI12 368 aa15.32■□□□□ 0.04
CCDC88A-211ENST00000471947 PCNTO95613 3336 aa15.32■□□□□ 0.04
CCDC88A-211ENST00000471947 TMCO5BA8MYB1 307 aa15.32■□□□□ 0.04
CCDC88A-211ENST00000471947 NKRFO15226 690 aaKnown RBP eCLIP15.32■□□□□ 0.04
CCDC88A-211ENST00000471947 TNNT3P45378 269 aaPredicted RBP15.32■□□□□ 0.04
CCDC88A-211ENST00000471947 RAPGEF1Q13905 1077 aa15.32■□□□□ 0.04
CCDC88A-211ENST00000471947 ZNF658Q5TYW1 1059 aaPredicted RBP15.32■□□□□ 0.04
CCDC88A-211ENST00000471947 RAD9BQ6WBX8 426 aa15.32■□□□□ 0.04
CCDC88A-211ENST00000471947 NIM1KQ8IY84 436 aa15.32■□□□□ 0.04
CCDC88A-211ENST00000471947 TTLL6Q8N841 843 aa15.32■□□□□ 0.04
CCDC88A-211ENST00000471947 BCAS3Q9H6U6 928 aa15.32■□□□□ 0.04
CCDC88A-211ENST00000471947 AGPAT5Q9NUQ2 364 aa15.32■□□□□ 0.04
CCDC88A-211ENST00000471947 AKAP11Q9UKA4 1901 aa15.32■□□□□ 0.04
CCDC88A-211ENST00000471947 PNMA6FA0A0J9YX94 578 aa15.32■□□□□ 0.04
CCDC88A-211ENST00000471947 RNF225M0QZC1 329 aaPredicted RBP15.32■□□□□ 0.04
CCDC88A-211ENST00000471947 ZBTB39O15060 712 aa15.32■□□□□ 0.04
CCDC88A-211ENST00000471947 SRGAP2O75044 1071 aa15.32■□□□□ 0.04
CCDC88A-211ENST00000471947 LLGL1Q15334 1064 aa15.32■□□□□ 0.04
CCDC88A-211ENST00000471947 TC2NQ8N9U0 490 aa15.32■□□□□ 0.04
CCDC88A-211ENST00000471947 ZNF579Q8NAF0 562 aaKnown RBP15.32■□□□□ 0.04
CCDC88A-211ENST00000471947 AKT1S1Q96B36 256 aa15.32■□□□□ 0.04
CCDC88A-211ENST00000471947 TRERF1Q96PN7 1200 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 103.8 ms