RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 MMP1P03956 469 aa6.85□□□□□ -1.31
USP39-213ENST00000467885 ICAM1P05362 532 aa6.85□□□□□ -1.31
USP39-213ENST00000467885 CYP2C8P10632 490 aa6.85□□□□□ -1.31
USP39-213ENST00000467885 TAL1P17542 331 aaPredicted RBP6.85□□□□□ -1.31
USP39-213ENST00000467885 TOB1P50616 345 aaPredicted RBP6.85□□□□□ -1.31
USP39-213ENST00000467885 OAZ1P54368 228 aa6.85□□□□□ -1.31
USP39-213ENST00000467885 NLRP5P59047 1200 aa6.85□□□□□ -1.31
USP39-213ENST00000467885 HERVK_113P62684 666 aa6.85□□□□□ -1.31
USP39-213ENST00000467885 HTRA3P83110 453 aa6.85□□□□□ -1.31
USP39-213ENST00000467885 IKQ13123 557 aaPredicted RBP6.85□□□□□ -1.31
USP39-213ENST00000467885 NOM1Q5C9Z4 860 aaKnown RBP6.85□□□□□ -1.31
USP39-213ENST00000467885 EARS2Q5JPH6 523 aaKnown RBP6.85□□□□□ -1.31
USP39-213ENST00000467885 GALNT17Q6IS24 598 aa6.85□□□□□ -1.31
USP39-213ENST00000467885 FAM173BQ6P4H8 233 aa6.85□□□□□ -1.31
USP39-213ENST00000467885 CCDC174Q6PII3 467 aa6.85□□□□□ -1.31
USP39-213ENST00000467885 CLEC17AQ6ZS10 378 aa6.85□□□□□ -1.31
USP39-213ENST00000467885 HEATR3Q7Z4Q2 680 aa6.85□□□□□ -1.31
USP39-213ENST00000467885 CPXCR1Q8N123 301 aa6.85□□□□□ -1.31
USP39-213ENST00000467885 PSTPIP2Q9H939 334 aa6.85□□□□□ -1.31
USP39-213ENST00000467885 TXNRD2Q9NNW7 524 aa6.85□□□□□ -1.31
USP39-213ENST00000467885 RIC8AQ9NPQ8 531 aa6.85□□□□□ -1.31
USP39-213ENST00000467885 PCDHA6Q9UN73 950 aa6.85□□□□□ -1.31
USP39-213ENST00000467885 PCDHA4Q9UN74 947 aa6.85□□□□□ -1.31
USP39-213ENST00000467885 RABGAP1Q9Y3P9 1069 aa6.85□□□□□ -1.31
USP39-213ENST00000467885 PCDHA8Q9Y5H6 950 aa6.85□□□□□ -1.31
USP39-213ENST00000467885 WDR33Q9C0J8 1336 aaKnown RBP6.84□□□□□ -1.31
USP39-213ENST00000467885 ESYT2A0FGR8 921 aa6.84□□□□□ -1.31
USP39-213ENST00000467885 H3BQV1 296 aa6.84□□□□□ -1.31
USP39-213ENST00000467885 hCG_1984214I3L0E3 225 aa6.84□□□□□ -1.31
USP39-213ENST00000467885 AOC2O75106 756 aa6.84□□□□□ -1.31
USP39-213ENST00000467885 MAP2K2P36507 400 aa6.84□□□□□ -1.31
USP39-213ENST00000467885 CLK2P49760 499 aaKnown RBP6.84□□□□□ -1.31
USP39-213ENST00000467885 VEGFBP49765 207 aa6.84□□□□□ -1.31
USP39-213ENST00000467885 MRPL12P52815 198 aaKnown RBP6.84□□□□□ -1.31
USP39-213ENST00000467885 FOSBP53539 338 aa6.84□□□□□ -1.31
USP39-213ENST00000467885 GHRHRQ02643 423 aa6.84□□□□□ -1.31
USP39-213ENST00000467885 TRAF1Q13077 416 aa6.84□□□□□ -1.31
USP39-213ENST00000467885 RESTQ13127 1097 aa6.84□□□□□ -1.31
USP39-213ENST00000467885 NR5A1Q13285 461 aa6.84□□□□□ -1.31
USP39-213ENST00000467885 PABPC4Q13310 644 aaKnown RBP eCLIP6.84□□□□□ -1.312e-7■■■□□ 18
USP39-213ENST00000467885 NBR1Q14596 966 aa6.84□□□□□ -1.31
USP39-213ENST00000467885 MUM1L1Q5H9M0 696 aa6.84□□□□□ -1.31
USP39-213ENST00000467885 IFFO2Q5TF58 517 aa6.84□□□□□ -1.31
USP39-213ENST00000467885 FOXD4L5Q5VV16 416 aaPredicted RBP6.84□□□□□ -1.31
USP39-213ENST00000467885 USP17L6PQ6QN14 398 aa6.84□□□□□ -1.31
USP39-213ENST00000467885 C17orf99Q6UX52 265 aa6.84□□□□□ -1.31
USP39-213ENST00000467885 RIOX2Q8IUF8 465 aa6.84□□□□□ -1.31
USP39-213ENST00000467885 DIS3L2Q8IYB7 885 aaKnown RBP6.84□□□□□ -1.31
USP39-213ENST00000467885 HS6ST3Q8IZP7 471 aa6.84□□□□□ -1.31
USP39-213ENST00000467885 BLIDQ8IZY5 108 aa6.84□□□□□ -1.31
USP39-213ENST00000467885 DNAJC5GQ8N7S2 189 aa6.84□□□□□ -1.31
USP39-213ENST00000467885 ZNF713Q8N859 430 aaPredicted RBP6.84□□□□□ -1.31
USP39-213ENST00000467885 MB21D1Q8N884 522 aa6.84□□□□□ -1.31
USP39-213ENST00000467885 ZNF454Q8N9F8 522 aa6.84□□□□□ -1.31
USP39-213ENST00000467885 DAGLBQ8NCG7 672 aa6.84□□□□□ -1.31
USP39-213ENST00000467885 FOXD4L4Q8WXT5 416 aaPredicted RBP6.84□□□□□ -1.31
USP39-213ENST00000467885 BBXQ8WY36 941 aaPredicted RBP6.84□□□□□ -1.31
USP39-213ENST00000467885 TNPO1Q92973 898 aaKnown RBP6.84□□□□□ -1.31
USP39-213ENST00000467885 CHAMP1Q96JM3 812 aa6.84□□□□□ -1.31
USP39-213ENST00000467885 CAPNS2Q96L46 248 aa6.84□□□□□ -1.31
USP39-213ENST00000467885 TRERF1Q96PN7 1200 aa6.84□□□□□ -1.31
USP39-213ENST00000467885 MOV10L1Q9BXT6 1211 aaKnown RBP6.84□□□□□ -1.31
USP39-213ENST00000467885 SLC4A5Q9BY07 1137 aa6.84□□□□□ -1.31
USP39-213ENST00000467885 FOXP1Q9H334 677 aaPredicted RBP6.84□□□□□ -1.31
USP39-213ENST00000467885 ZSCAN16Q9H4T2 348 aaPredicted RBP6.84□□□□□ -1.31
USP39-213ENST00000467885 C6orf50Q9HD87 102 aa6.84□□□□□ -1.31
USP39-213ENST00000467885 ZCCHC17Q9NP64 241 aaKnown RBP6.84□□□□□ -1.31
USP39-213ENST00000467885 TFIP11Q9UBB9 837 aaKnown RBP6.84□□□□□ -1.31
USP39-213ENST00000467885 MORF4L1Q9UBU8 362 aa6.84□□□□□ -1.31
USP39-213ENST00000467885 BIN2Q9UBW5 565 aaPredicted RBP6.84□□□□□ -1.31
USP39-213ENST00000467885 SEC63Q9UGP8 760 aaKnown RBP6.84□□□□□ -1.31
USP39-213ENST00000467885 PNMA2Q9UL42 364 aa6.84□□□□□ -1.31
USP39-213ENST00000467885 ISY1Q9ULR0 285 aaKnown RBP6.84□□□□□ -1.31
USP39-213ENST00000467885 MRPL11Q9Y3B7 192 aaKnown RBP6.84□□□□□ -1.31
USP39-213ENST00000467885 KIF3AQ9Y496 699 aa6.84□□□□□ -1.31
USP39-213ENST00000467885 LAMB1P07942 1786 aa6.83□□□□□ -1.32
USP39-213ENST00000467885 BHMG1C9JSJ3 638 aaPredicted RBP6.83□□□□□ -1.32
USP39-213ENST00000467885 PIK3CDO00329 1044 aa6.83□□□□□ -1.32
USP39-213ENST00000467885 F13A1P00488 732 aa6.83□□□□□ -1.32
USP39-213ENST00000467885 ALAS1P13196 640 aa6.83□□□□□ -1.32
USP39-213ENST00000467885 XBP1P17861 261 aa6.83□□□□□ -1.32
USP39-213ENST00000467885 CALML3P27482 149 aa6.83□□□□□ -1.32
USP39-213ENST00000467885 GNA11P29992 359 aa6.83□□□□□ -1.32
USP39-213ENST00000467885 GCLCP48506 637 aaPredicted RBP6.83□□□□□ -1.32
USP39-213ENST00000467885 NAPAP54920 295 aa6.83□□□□□ -1.32
USP39-213ENST00000467885 IRX3P78415 501 aaPredicted RBP6.83□□□□□ -1.32
USP39-213ENST00000467885 NOGQ13253 232 aa6.83□□□□□ -1.32
USP39-213ENST00000467885 TRIM29Q14134 588 aa6.83□□□□□ -1.32
USP39-213ENST00000467885 TKFCQ3LXA3 575 aa6.83□□□□□ -1.32
USP39-213ENST00000467885 USH1GQ495M9 461 aa6.83□□□□□ -1.32
USP39-213ENST00000467885 FERMT3Q86UX7 667 aa6.83□□□□□ -1.32
USP39-213ENST00000467885 TEX2Q8IWB9 1127 aa6.83□□□□□ -1.32
USP39-213ENST00000467885 SAMD3Q8N6K7 520 aa6.83□□□□□ -1.32
USP39-213ENST00000467885 GPRC5AQ8NFJ5 357 aa6.83□□□□□ -1.32
USP39-213ENST00000467885 CRYGNQ8WXF5 182 aa6.83□□□□□ -1.32
USP39-213ENST00000467885 TAAR1Q96RJ0 339 aa6.83□□□□□ -1.32
USP39-213ENST00000467885 MAF1Q9H063 256 aa6.83□□□□□ -1.32
USP39-213ENST00000467885 SPATC1LQ9H0A9 340 aa6.83□□□□□ -1.32
USP39-213ENST00000467885 TMEM260Q9NX78 707 aa6.83□□□□□ -1.32
USP39-213ENST00000467885 MAP3K20Q9NYL2 800 aaKnown RBP6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms