RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 GTF2IRD2BQ6EKJ0 949 aa5.43□□□□□ -1.54
HMGB3-203ENST00000430118 CCSAPQ6IQ19 270 aaPredicted RBP5.43□□□□□ -1.54
HMGB3-203ENST00000430118 STYK1Q6J9G0 422 aa5.43□□□□□ -1.54
HMGB3-203ENST00000430118 CNNM4Q6P4Q7 775 aa5.43□□□□□ -1.54
HMGB3-203ENST00000430118 RSPO2Q6UXX9 243 aaPredicted RBP5.43□□□□□ -1.54
HMGB3-203ENST00000430118 GTF2IRD2Q86UP8 949 aa5.43□□□□□ -1.54
HMGB3-203ENST00000430118 FMNL3Q8IVF7 1028 aa5.43□□□□□ -1.54
HMGB3-203ENST00000430118 CCAR1Q8IX12 1150 aaKnown RBP5.43□□□□□ -1.54
HMGB3-203ENST00000430118 PSMG3-AS1Q96PY0 264 aa5.43□□□□□ -1.54
HMGB3-203ENST00000430118 SLC52A2Q9HAB3 445 aa5.43□□□□□ -1.54
HMGB3-203ENST00000430118 NOP53Q9NZM5 478 aaKnown RBP5.43□□□□□ -1.54
HMGB3-203ENST00000430118 ADAMTS8Q9UP79 889 aa5.43□□□□□ -1.54
HMGB3-203ENST00000430118 SLIT1O75093 1534 aa5.43□□□□□ -1.54
HMGB3-203ENST00000430118 GPATCH8Q9UKJ3 1502 aaKnown RBP5.43□□□□□ -1.54
HMGB3-203ENST00000430118 TMEM94Q12767 1356 aa5.42□□□□□ -1.54
HMGB3-203ENST00000430118 TIAM1Q13009 1591 aa5.42□□□□□ -1.54
HMGB3-203ENST00000430118 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.42□□□□□ -1.54
HMGB3-203ENST00000430118 E2F8A0AVK6 867 aa5.42□□□□□ -1.54
HMGB3-203ENST00000430118 FAM83GA6ND36 823 aa5.42□□□□□ -1.54
HMGB3-203ENST00000430118 KIF3BO15066 747 aa5.42□□□□□ -1.54
HMGB3-203ENST00000430118 ZEB2O60315 1214 aa5.42□□□□□ -1.54
HMGB3-203ENST00000430118 ALDH1L1O75891 902 aa5.42□□□□□ -1.54
HMGB3-203ENST00000430118 DRD2P14416 443 aa5.42□□□□□ -1.54
HMGB3-203ENST00000430118 ITIH2P19823 946 aa5.42□□□□□ -1.54
HMGB3-203ENST00000430118 KIR3DL1P43629 444 aa5.42□□□□□ -1.54
HMGB3-203ENST00000430118 GSK3AP49840 483 aa5.42□□□□□ -1.54
HMGB3-203ENST00000430118 GUCY2FP51841 1108 aa5.42□□□□□ -1.54
HMGB3-203ENST00000430118 HNRNPMP52272 730 aaKnown RBP eCLIP5.42□□□□□ -1.54
HMGB3-203ENST00000430118 ZNF445P59923 1031 aa5.42□□□□□ -1.54
HMGB3-203ENST00000430118 HLTFQ14527 1009 aaKnown RBP eCLIP5.42□□□□□ -1.54
HMGB3-203ENST00000430118 NFE2Q16621 373 aaPredicted RBP5.42□□□□□ -1.54
HMGB3-203ENST00000430118 PRRT3Q5FWE3 981 aa5.42□□□□□ -1.54
HMGB3-203ENST00000430118 SLC35F1Q5T1Q4 408 aa5.42□□□□□ -1.54
HMGB3-203ENST00000430118 GPAT2Q6NUI2 795 aa5.42□□□□□ -1.54
HMGB3-203ENST00000430118 UBE2R2Q712K3 238 aaPredicted RBP5.42□□□□□ -1.54
HMGB3-203ENST00000430118 SPATS2Q86XZ4 545 aaKnown RBP5.42□□□□□ -1.54
HMGB3-203ENST00000430118 SLC7A14Q8TBB6 771 aa5.42□□□□□ -1.54
HMGB3-203ENST00000430118 ENOX1Q8TC92 643 aaKnown RBP5.42□□□□□ -1.54
HMGB3-203ENST00000430118 DCAF4Q8WV16 495 aa5.42□□□□□ -1.54
HMGB3-203ENST00000430118 BTN2A2Q8WVV5 523 aa5.42□□□□□ -1.54
HMGB3-203ENST00000430118 TRIM11Q96F44 468 aa5.42□□□□□ -1.54
HMGB3-203ENST00000430118 C1orf159Q96HA4 380 aa5.42□□□□□ -1.54
HMGB3-203ENST00000430118 ZNF512BQ96KM6 892 aaPredicted RBP5.42□□□□□ -1.54
HMGB3-203ENST00000430118 MAGEB10Q96LZ2 347 aaPredicted RBP5.42□□□□□ -1.54
HMGB3-203ENST00000430118 CAMKK2Q96RR4 588 aa5.42□□□□□ -1.54
HMGB3-203ENST00000430118 MIPEPQ99797 713 aa5.42□□□□□ -1.54
HMGB3-203ENST00000430118 FAM126AQ9BYI3 521 aaPredicted RBP5.42□□□□□ -1.54
HMGB3-203ENST00000430118 PUS7LQ9H0K6 701 aaKnown RBP5.42□□□□□ -1.54
HMGB3-203ENST00000430118 NDOR1Q9UHB4 597 aa5.42□□□□□ -1.54
HMGB3-203ENST00000430118 FBXL21Q9UKT6 434 aa5.42□□□□□ -1.54
HMGB3-203ENST00000430118 THRAP3Q9Y2W1 955 aaKnown RBP5.42□□□□□ -1.54
HMGB3-203ENST00000430118 SPEF1Q9Y4P9 236 aa5.42□□□□□ -1.54
HMGB3-203ENST00000430118 CCDC141Q6ZP82 1450 aa5.42□□□□□ -1.54
HMGB3-203ENST00000430118 LRRIQ1Q96JM4 1722 aa5.42□□□□□ -1.54
HMGB3-203ENST00000430118 PRDM15P57071 1507 aaPredicted RBP5.42□□□□□ -1.54
HMGB3-203ENST00000430118 SHPRHQ149N8 1683 aa5.41□□□□□ -1.54
HMGB3-203ENST00000430118 ERVK-7P63135 1459 aa5.41□□□□□ -1.54
HMGB3-203ENST00000430118 UBR1Q8IWV7 1749 aa5.41□□□□□ -1.54
HMGB3-203ENST00000430118 RNF225M0QZC1 329 aaPredicted RBP5.41□□□□□ -1.54
HMGB3-203ENST00000430118 GPR39O43194 453 aa5.41□□□□□ -1.54
HMGB3-203ENST00000430118 TBX1O43435 398 aa5.41□□□□□ -1.54
HMGB3-203ENST00000430118 SIGLEC6O43699 453 aa5.41□□□□□ -1.54
HMGB3-203ENST00000430118 OPA1O60313 960 aa5.41□□□□□ -1.54
HMGB3-203ENST00000430118 SLITRK5O94991 958 aa5.41□□□□□ -1.54
HMGB3-203ENST00000430118 KCNH1O95259 989 aa5.41□□□□□ -1.54
HMGB3-203ENST00000430118 AMPD2Q01433 879 aa5.41□□□□□ -1.54
HMGB3-203ENST00000430118 TTF1Q15361 905 aaPredicted RBP5.41□□□□□ -1.54
HMGB3-203ENST00000430118 ACBD5Q5T8D3 534 aaPredicted RBP5.41□□□□□ -1.54
HMGB3-203ENST00000430118 ZNF385CQ66K41 422 aaPredicted RBP5.41□□□□□ -1.54
HMGB3-203ENST00000430118 LYPD4Q6UWN0 246 aa5.41□□□□□ -1.54
HMGB3-203ENST00000430118 PPP1R3FQ6ZSY5 799 aaPredicted RBP5.41□□□□□ -1.54
HMGB3-203ENST00000430118 C22orf34Q6ZV56 151 aa5.41□□□□□ -1.54
HMGB3-203ENST00000430118 TMEM151AQ8N4L1 468 aa5.41□□□□□ -1.54
HMGB3-203ENST00000430118 FIBCD1Q8N539 461 aa5.41□□□□□ -1.54
HMGB3-203ENST00000430118 GIMAP7Q8NHV1 300 aa5.41□□□□□ -1.54
HMGB3-203ENST00000430118 WDR66Q8TBY9 1149 aa5.41□□□□□ -1.54
HMGB3-203ENST00000430118 SEMA6CQ9H3T2 930 aa5.41□□□□□ -1.54
HMGB3-203ENST00000430118 AKTIPQ9H8T0 292 aa5.41□□□□□ -1.54
HMGB3-203ENST00000430118 PRDM10Q9NQV6 1147 aa5.41□□□□□ -1.54
HMGB3-203ENST00000430118 KCNH3Q9ULD8 1083 aa5.41□□□□□ -1.54
HMGB3-203ENST00000430118 MKL2Q9ULH7 1088 aa5.41□□□□□ -1.54
HMGB3-203ENST00000430118 RNF112Q9ULX5 631 aa5.41□□□□□ -1.54
HMGB3-203ENST00000430118 APOBEC2Q9Y235 224 aaKnown RBP5.41□□□□□ -1.54
HMGB3-203ENST00000430118 MAP3K1Q13233 1512 aa5.41□□□□□ -1.54
HMGB3-203ENST00000430118 MTUS2Q5JR59 1369 aa5.41□□□□□ -1.54
HMGB3-203ENST00000430118 EIF2AK4Q9P2K8 1649 aaKnown RBP5.41□□□□□ -1.54
HMGB3-203ENST00000430118 CAMSAP2Q08AD1 1489 aa5.4□□□□□ -1.54
HMGB3-203ENST00000430118 ARHGAP23Q9P227 1491 aa5.4□□□□□ -1.54
HMGB3-203ENST00000430118 XIRP1Q702N8 1843 aaKnown RBP5.4□□□□□ -1.54
HMGB3-203ENST00000430118 TCRBV16S1A1N1A0A5B0 115 aa5.4□□□□□ -1.54
HMGB3-203ENST00000430118 SART1O43290 800 aaKnown RBP5.4□□□□□ -1.54
HMGB3-203ENST00000430118 GAS2O43903 313 aaKnown RBP5.4□□□□□ -1.54
HMGB3-203ENST00000430118 RASGRP1O95267 797 aa5.4□□□□□ -1.54
HMGB3-203ENST00000430118 GDF11O95390 407 aa5.4□□□□□ -1.54
HMGB3-203ENST00000430118 GSNP06396 782 aa5.4□□□□□ -1.54
HMGB3-203ENST00000430118 SNRPB2P08579 225 aaKnown RBP5.4□□□□□ -1.54
HMGB3-203ENST00000430118 USP11P51784 963 aa5.4□□□□□ -1.54
HMGB3-203ENST00000430118 TBX4P57082 545 aa5.4□□□□□ -1.54
HMGB3-203ENST00000430118 POU4F1Q01851 419 aa5.4□□□□□ -1.54
HMGB3-203ENST00000430118 NRG1Q02297 640 aaPredicted RBP5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms