RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 ZNF341Q9BYN7 854 aa10.69□□□□□ -0.7
HMGB4-201ENST00000425537 LRRC27Q9C0I9 530 aa10.69□□□□□ -0.7
HMGB4-201ENST00000425537 AS3MTQ9HBK9 375 aa10.69□□□□□ -0.7
HMGB4-201ENST00000425537 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.69□□□□□ -0.7
HMGB4-201ENST00000425537 PCDHA5Q9Y5H7 936 aa10.69□□□□□ -0.7
HMGB4-201ENST00000425537 SPDYE3A6NKU9 549 aa10.68□□□□□ -0.7
HMGB4-201ENST00000425537 ESPNB1AK53 854 aa10.68□□□□□ -0.7
HMGB4-201ENST00000425537 BIN1O00499 593 aa10.68□□□□□ -0.7
HMGB4-201ENST00000425537 CBFA2T2O43439 604 aa10.68□□□□□ -0.7
HMGB4-201ENST00000425537 GTPBP6O43824 516 aaPredicted RBP10.68□□□□□ -0.7
HMGB4-201ENST00000425537 CLK2P49760 499 aaKnown RBP10.68□□□□□ -0.7
HMGB4-201ENST00000425537 HTRA3P83110 453 aa10.68□□□□□ -0.7
HMGB4-201ENST00000425537 MYL5Q02045 173 aa10.68□□□□□ -0.7
HMGB4-201ENST00000425537 GRIN1Q05586 938 aa10.68□□□□□ -0.7
HMGB4-201ENST00000425537 PDIA5Q14554 519 aa10.68□□□□□ -0.7
HMGB4-201ENST00000425537 NOM1Q5C9Z4 860 aaKnown RBP10.68□□□□□ -0.7
HMGB4-201ENST00000425537 RASGRP2Q7LDG7 609 aa10.68□□□□□ -0.7
HMGB4-201ENST00000425537 DRC7Q8IY82 874 aa10.68□□□□□ -0.7
HMGB4-201ENST00000425537 AOPEPQ8N6M6 819 aa10.68□□□□□ -0.7
HMGB4-201ENST00000425537 MRFAP1L1Q96HT8 127 aa10.68□□□□□ -0.7
HMGB4-201ENST00000425537 ZNF408Q9H9D4 720 aa10.68□□□□□ -0.7
HMGB4-201ENST00000425537 PGAP2Q9UHJ9 254 aa10.68□□□□□ -0.7
HMGB4-201ENST00000425537 MRPL11Q9Y3B7 192 aaKnown RBP10.68□□□□□ -0.7
HMGB4-201ENST00000425537 POLR2AP24928 1970 aaKnown RBP10.68□□□□□ -0.7
HMGB4-201ENST00000425537 ABCB11O95342 1321 aa10.67□□□□□ -0.7
HMGB4-201ENST00000425537 WDR46O15213 610 aaKnown RBP10.67□□□□□ -0.7
HMGB4-201ENST00000425537 ERCC5P28715 1186 aaPredicted RBP10.67□□□□□ -0.7
HMGB4-201ENST00000425537 PPP1R2P41236 205 aa10.67□□□□□ -0.7
HMGB4-201ENST00000425537 SARSP49591 514 aaKnown RBP10.67□□□□□ -0.7
HMGB4-201ENST00000425537 FXR2P51116 673 aaKnown RBP eCLIP10.67□□□□□ -0.7
HMGB4-201ENST00000425537 ZNF75DP51815 510 aa10.67□□□□□ -0.7
HMGB4-201ENST00000425537 DPCR1Q3MIW9 517 aa10.67□□□□□ -0.7
HMGB4-201ENST00000425537 SUPT20HL1Q3ZLR7 823 aa10.67□□□□□ -0.7
HMGB4-201ENST00000425537 CHADLQ6NUI6 762 aa10.67□□□□□ -0.7
HMGB4-201ENST00000425537 USP50Q70EL3 339 aaPredicted RBP10.67□□□□□ -0.7
HMGB4-201ENST00000425537 MIGA2Q7L4E1 593 aa10.67□□□□□ -0.7
HMGB4-201ENST00000425537 SH3RF1Q7Z6J0 888 aa10.67□□□□□ -0.7
HMGB4-201ENST00000425537 LDHDQ86WU2 507 aa10.67□□□□□ -0.7
HMGB4-201ENST00000425537 SLFN12Q8IYM2 578 aa10.67□□□□□ -0.7
HMGB4-201ENST00000425537 SAMD3Q8N6K7 520 aa10.67□□□□□ -0.7
HMGB4-201ENST00000425537 SPATA20Q8TB22 786 aa10.67□□□□□ -0.7
HMGB4-201ENST00000425537 PAGE5Q96GU1 130 aa10.67□□□□□ -0.7
HMGB4-201ENST00000425537 CDK5RAP3Q96JB5 506 aa10.67□□□□□ -0.7
HMGB4-201ENST00000425537 KIAA1683Q9H0B3 1180 aa10.67□□□□□ -0.7
HMGB4-201ENST00000425537 DEFB129Q9H1M3 183 aa10.67□□□□□ -0.7
HMGB4-201ENST00000425537 DISC1Q9NRI5 854 aa10.67□□□□□ -0.7
HMGB4-201ENST00000425537 STK17AQ9UEE5 414 aa10.67□□□□□ -0.7
HMGB4-201ENST00000425537 PRR12Q9ULL5 1215 aa10.67□□□□□ -0.7
HMGB4-201ENST00000425537 FZD1Q9UP38 647 aa10.67□□□□□ -0.7
HMGB4-201ENST00000425537 RABGAP1Q9Y3P9 1069 aa10.67□□□□□ -0.7
HMGB4-201ENST00000425537 CTDP1Q9Y5B0 961 aaPredicted RBP10.67□□□□□ -0.7
HMGB4-201ENST00000425537 PITPNM2Q9BZ72 1349 aa10.66□□□□□ -0.7
HMGB4-201ENST00000425537 ATAD5Q96QE3 1844 aa10.66□□□□□ -0.7
HMGB4-201ENST00000425537 A0A1W2PRG0 241 aa10.66□□□□□ -0.7
HMGB4-201ENST00000425537 PIK3CDO00329 1044 aa10.66□□□□□ -0.7
HMGB4-201ENST00000425537 WNT7AO00755 349 aa10.66□□□□□ -0.7
HMGB4-201ENST00000425537 TBX3O15119 743 aa10.66□□□□□ -0.7
HMGB4-201ENST00000425537 PPP1R11O60927 126 aaPredicted RBP10.66□□□□□ -0.7
HMGB4-201ENST00000425537 TOMM70O94826 608 aa10.66□□□□□ -0.7
HMGB4-201ENST00000425537 MORC3Q14149 939 aa10.66□□□□□ -0.7
HMGB4-201ENST00000425537 FAM83BQ5T0W9 1011 aa10.66□□□□□ -0.7
HMGB4-201ENST00000425537 USP49Q70CQ1 688 aa10.66□□□□□ -0.7
HMGB4-201ENST00000425537 CABP7Q86V35 215 aa10.66□□□□□ -0.7
HMGB4-201ENST00000425537 PNMA8AQ86V59 439 aaPredicted RBP10.66□□□□□ -0.7
HMGB4-201ENST00000425537 CDAN1Q8IWY9 1227 aa10.66□□□□□ -0.7
HMGB4-201ENST00000425537 DHX40Q8IX18 779 aaKnown RBP10.66□□□□□ -0.7
HMGB4-201ENST00000425537 ANO3Q9BYT9 981 aa10.66□□□□□ -0.7
HMGB4-201ENST00000425537 PICK1Q9NRD5 415 aa10.66□□□□□ -0.7
HMGB4-201ENST00000425537 TMEM260Q9NX78 707 aa10.66□□□□□ -0.7
HMGB4-201ENST00000425537 LRWD1Q9UFC0 647 aa10.66□□□□□ -0.7
HMGB4-201ENST00000425537 DDX25Q9UHL0 483 aaKnown RBP10.66□□□□□ -0.7
HMGB4-201ENST00000425537 MAN1B1Q9UKM7 699 aa10.66□□□□□ -0.7
HMGB4-201ENST00000425537 KDM3AQ9Y4C1 1321 aa10.65□□□□□ -0.7
HMGB4-201ENST00000425537 CYP3A7-CYP3A51PA0A087WV96 503 aa10.65□□□□□ -0.7
HMGB4-201ENST00000425537 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.65□□□□□ -0.7
HMGB4-201ENST00000425537 PHF20L1A8MW92 1017 aa10.65□□□□□ -0.7
HMGB4-201ENST00000425537 NRDCO43847 1150 aa10.65□□□□□ -0.7
HMGB4-201ENST00000425537 SLURP2P0DP57 97 aa10.65□□□□□ -0.7
HMGB4-201ENST00000425537 CYP3A7P24462 503 aa10.65□□□□□ -0.7
HMGB4-201ENST00000425537 AFMP43652 599 aa10.65□□□□□ -0.7
HMGB4-201ENST00000425537 JAG1P78504 1218 aa10.65□□□□□ -0.7
HMGB4-201ENST00000425537 DPYDQ12882 1025 aa10.65□□□□□ -0.7
HMGB4-201ENST00000425537 STIM1Q13586 685 aa10.65□□□□□ -0.7
HMGB4-201ENST00000425537 PRKG1Q13976 671 aa10.65□□□□□ -0.7
HMGB4-201ENST00000425537 RRP1BQ14684 758 aaKnown RBP10.65□□□□□ -0.7
HMGB4-201ENST00000425537 E2F4Q16254 413 aa10.65□□□□□ -0.7
HMGB4-201ENST00000425537 UBE2SQ16763 222 aa10.65□□□□□ -0.7
HMGB4-201ENST00000425537 KRT79Q5XKE5 535 aa10.65□□□□□ -0.7
HMGB4-201ENST00000425537 KRT26Q7Z3Y9 468 aa10.65□□□□□ -0.7
HMGB4-201ENST00000425537 PLA2G4DQ86XP0 818 aa10.65□□□□□ -0.7
HMGB4-201ENST00000425537 KCTD17Q8N5Z5 321 aa10.65□□□□□ -0.7
HMGB4-201ENST00000425537 IGSF22Q8N9C0 903 aa10.65□□□□□ -0.7
HMGB4-201ENST00000425537 PRPF38AQ8NAV1 312 aaKnown RBP10.65□□□□□ -0.7
HMGB4-201ENST00000425537 SMC1BQ8NDV3 1235 aa10.65□□□□□ -0.7
HMGB4-201ENST00000425537 RBM46Q8TBY0 533 aaKnown RBP10.65□□□□□ -0.7
HMGB4-201ENST00000425537 ACER1Q8TDN7 264 aa10.65□□□□□ -0.7
HMGB4-201ENST00000425537 DCPSQ96C86 337 aaKnown RBP10.65□□□□□ -0.7
HMGB4-201ENST00000425537 TEPSINQ96N21 525 aa10.65□□□□□ -0.7
HMGB4-201ENST00000425537 MTMR9Q96QG7 549 aa10.65□□□□□ -0.7
HMGB4-201ENST00000425537 NUP88Q99567 741 aaPredicted RBP10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms