RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 PCCAP05165 728 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-203ENST00000409050 POLR2MP0CAP2 368 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 GFAPP14136 432 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 PSMC2P35998 433 aaKnown RBP6.64□□□□□ -1.35
SCN1A-203ENST00000409050 HSP90AA4PQ58FG1 418 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 LRCH2Q5VUJ6 765 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 C16orf71Q8IYS4 520 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-203ENST00000409050 NME8Q8N427 588 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 CACTINQ8WUQ7 758 aaKnown RBP6.64□□□□□ -1.35
SCN1A-203ENST00000409050 GRAMD1AQ96CP6 724 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 RPS6KC1Q96S38 1066 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 SMCO2A6NFE2 343 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 MYO1FO00160 1098 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 OPHN1O60890 802 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 EXOC3L4Q17RC7 722 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 BEND3Q5T5X7 828 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 ZNF658Q5TYW1 1059 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-203ENST00000409050 CASC4Q6P4E1 433 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 ST13P4Q8IZP2 240 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-203ENST00000409050 FBXO18Q8NFZ0 1043 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 UPF3AQ9H1J1 476 aaKnown RBP6.64□□□□□ -1.35
SCN1A-203ENST00000409050 KIF9Q9HAQ2 790 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 PANK4Q9NVE7 773 aa6.64□□□□□ -1.35
SCN1A-203ENST00000409050 ASXL2Q76L83 1435 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 MAP3K19Q56UN5 1328 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP6.63□□□□□ -1.35
SCN1A-203ENST00000409050 IQANK1A0A1B0GTG1 560 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 ECEL1O95672 775 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 IFNA8P32881 189 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 FKBP3Q00688 224 aaKnown RBP6.63□□□□□ -1.35
SCN1A-203ENST00000409050 DMP1Q13316 513 aaPredicted RBP6.63□□□□□ -1.35
SCN1A-203ENST00000409050 TCIRG1Q13488 830 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 CTAGE3PQ8IX95 158 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 MIGA1Q8NAN2 632 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 PSPC1Q8WXF1 523 aaKnown RBP6.63□□□□□ -1.35
SCN1A-203ENST00000409050 LRRC37BQ96QE4 947 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 DBNDD2Q9BQY9 259 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 PPANQ9NQ55 473 aaKnown RBP6.63□□□□□ -1.35
SCN1A-203ENST00000409050 PCDHA12Q9UN75 941 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 GRID2IPA4D2P6 1211 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 TTC36A6NLP5 189 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 GOLGA8JA6NMD2 632 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 UFL1O94874 794 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 KCNJ6P48051 423 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 LIG4P49917 911 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 RAD51AP2Q09MP3 1159 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 CATSPER1Q8NEC5 780 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 ADGRL3Q9HAR2 1447 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 ADCY9O60503 1353 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 CFAP73A6NFT4 308 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 A6NJR5 290 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 MAP3K7O43318 606 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 GGPS1O95749 300 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 TNNI1P19237 187 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 SERPINB4P48594 390 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 EIF6P56537 245 aaKnown RBP6.63□□□□□ -1.35
SCN1A-203ENST00000409050 FAM178BQ8IXR5 827 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 PROM2Q8N271 834 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 KIAA1586Q9HCI6 787 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 RCOR1Q9UKL0 485 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 NOD1Q9Y239 953 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 KDM5AP29375 1690 aaKnown RBP6.63□□□□□ -1.35
SCN1A-203ENST00000409050 TYW5A2RUC4 315 aaKnown RBP6.63□□□□□ -1.35
SCN1A-203ENST00000409050 AP3B1O00203 1094 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 CHUKO15111 745 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 AFPP02771 609 aaKnown RBP6.63□□□□□ -1.35
SCN1A-203ENST00000409050 OATP04181 439 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 PLS1Q14651 629 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 CWF19L2Q2TBE0 894 aaKnown RBP6.63□□□□□ -1.35
SCN1A-203ENST00000409050 FSCBQ5H9T9 825 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 NEK9Q8TD19 979 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 OLFM3Q96PB7 478 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 ACCSQ96QU6 501 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 ARMT1Q9H993 441 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 PALM3A6NDB9 673 aaPredicted RBP6.63□□□□□ -1.35
SCN1A-203ENST00000409050 MAPK13O15264 365 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 SERPING1P05155 500 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 SLFN14P0C7P3 912 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 GABPAQ06546 454 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 FBXO31Q5XUX0 539 aaPredicted RBP6.63□□□□□ -1.35
SCN1A-203ENST00000409050 KCTD17Q8N5Z5 321 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 PRPF38AQ8NAV1 312 aaKnown RBP6.63□□□□□ -1.35
SCN1A-203ENST00000409050 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.63□□□□□ -1.35
SCN1A-203ENST00000409050 ZNF212Q9UDV6 495 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 SLC12A6Q9UHW9 1150 aa6.63□□□□□ -1.35
SCN1A-203ENST00000409050 ZNF532Q9HCE3 1301 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 ATP7BP35670 1465 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 MYOM2P54296 1465 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 FMNL1O95466 1100 aaPredicted RBP6.62□□□□□ -1.35
SCN1A-203ENST00000409050 CHEK2O96017 543 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 USP14P54578 494 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 MMEL1Q495T6 779 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 JADE1Q6IE81 842 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 ELMSAN1Q6PJG2 1045 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 ZNF579Q8NAF0 562 aaKnown RBP6.62□□□□□ -1.35
SCN1A-203ENST00000409050 MAP4K1Q92918 833 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 P2RX5Q93086 422 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 FAM129AQ9BZQ8 928 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 GPCPD1Q9NPB8 672 aa6.62□□□□□ -1.35
SCN1A-203ENST00000409050 DNAJC17Q9NVM6 304 aaKnown RBP6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms