RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 DDX25Q9UHL0 483 aaKnown RBP7.85□□□□□ -1.15
UPF2-203ENST00000397053 SUFUQ9UMX1 484 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 NDUFB9Q9Y6M9 179 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 RALGAPBQ86X10 1494 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 H2AFZP0C0S5 128 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 PHEXP78562 749 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 GPATCH4Q5T3I0 446 aaKnown RBP7.85□□□□□ -1.15
UPF2-203ENST00000397053 FAM173BQ6P4H8 233 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 H2AFVQ71UI9 128 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 LRRC43Q8N309 656 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 SUCLG2Q96I99 432 aa7.85□□□□□ -1.15
UPF2-203ENST00000397053 LOC102724428A0A0B4J2F2 783 aa7.84□□□□□ -1.15
UPF2-203ENST00000397053 PPEF1O14829 653 aaPredicted RBP7.84□□□□□ -1.15
UPF2-203ENST00000397053 OR52Z1P0C646 297 aa7.84□□□□□ -1.15
UPF2-203ENST00000397053 ACTN1P12814 892 aa7.84□□□□□ -1.15
UPF2-203ENST00000397053 PPARGP37231 505 aaPredicted RBP7.84□□□□□ -1.15
UPF2-203ENST00000397053 SIK1P57059 783 aa7.84□□□□□ -1.15
UPF2-203ENST00000397053 CIAPIN1Q6FI81 312 aa7.84□□□□□ -1.15
UPF2-203ENST00000397053 KRT27Q7Z3Y8 459 aa7.84□□□□□ -1.15
UPF2-203ENST00000397053 SLC17A8Q8NDX2 589 aa7.84□□□□□ -1.15
UPF2-203ENST00000397053 ALKBH8Q96BT7 664 aaKnown RBP7.84□□□□□ -1.15
UPF2-203ENST00000397053 CEP170P1Q96L14 293 aa7.84□□□□□ -1.15
UPF2-203ENST00000397053 DBNDD1Q9H9R9 158 aa7.84□□□□□ -1.15
UPF2-203ENST00000397053 NXF1Q9UBU9 619 aaKnown RBP7.84□□□□□ -1.15
UPF2-203ENST00000397053 ZKSCAN5Q9Y2L8 839 aa7.84□□□□□ -1.15
UPF2-203ENST00000397053 PCDHB4Q9Y5E5 795 aa7.84□□□□□ -1.15
UPF2-203ENST00000397053 A0A1B0GUA9 196 aa7.84□□□□□ -1.15
UPF2-203ENST00000397053 SERPINB2P05120 415 aa7.84□□□□□ -1.15
UPF2-203ENST00000397053 UBXN2AP68543 259 aa7.84□□□□□ -1.15
UPF2-203ENST00000397053 MYO1EQ12965 1108 aa7.84□□□□□ -1.15
UPF2-203ENST00000397053 PHLDB3Q6NSJ2 640 aa7.84□□□□□ -1.15
UPF2-203ENST00000397053 TMC4Q7Z404 712 aa7.84□□□□□ -1.15
UPF2-203ENST00000397053 SDR42E1Q8WUS8 393 aa7.84□□□□□ -1.15
UPF2-203ENST00000397053 COA7Q96BR5 231 aa7.84□□□□□ -1.15
UPF2-203ENST00000397053 KDM5BQ9UGL1 1544 aa7.84□□□□□ -1.15
UPF2-203ENST00000397053 MYSM1Q5VVJ2 828 aa7.84□□□□□ -1.15
UPF2-203ENST00000397053 MIS18BP1Q6P0N0 1132 aa7.84□□□□□ -1.15
UPF2-203ENST00000397053 PLEKHM2Q8IWE5 1019 aa7.84□□□□□ -1.15
UPF2-203ENST00000397053 NUDCD1Q96RS6 583 aa7.84□□□□□ -1.15
UPF2-203ENST00000397053 PANK4Q9NVE7 773 aa7.84□□□□□ -1.15
UPF2-203ENST00000397053 ZNF804BA4D1E1 1349 aa7.84□□□□□ -1.15
UPF2-203ENST00000397053 SPECC1L-ADORA2AF8WAN1 911 aa7.84□□□□□ -1.15
UPF2-203ENST00000397053 GOLGA8SH3BPF8 625 aa7.84□□□□□ -1.15
UPF2-203ENST00000397053 GNGT2O14610 69 aa7.84□□□□□ -1.15
UPF2-203ENST00000397053 PMLP29590 882 aa7.84□□□□□ -1.15
UPF2-203ENST00000397053 ADAM9Q13443 819 aa7.84□□□□□ -1.15
UPF2-203ENST00000397053 ACRBPQ8NEB7 543 aa7.84□□□□□ -1.15
UPF2-203ENST00000397053 SPDL1Q96EA4 605 aa7.84□□□□□ -1.15
UPF2-203ENST00000397053 ZSCAN10Q96SZ4 725 aaPredicted RBP7.84□□□□□ -1.15
UPF2-203ENST00000397053 XDHP47989 1333 aa7.84□□□□□ -1.16
UPF2-203ENST00000397053 TMEM247A6NEH6 219 aa7.84□□□□□ -1.16
UPF2-203ENST00000397053 KCNK3O14649 394 aa7.84□□□□□ -1.16
UPF2-203ENST00000397053 MX2P20592 715 aa7.84□□□□□ -1.16
UPF2-203ENST00000397053 SOX5P35711 763 aa7.84□□□□□ -1.16
UPF2-203ENST00000397053 THOC5Q13769 683 aaKnown RBP7.84□□□□□ -1.16
UPF2-203ENST00000397053 HP1BP3Q5SSJ5 553 aaPredicted RBP7.84□□□□□ -1.16
UPF2-203ENST00000397053 CATSPER4Q7RTX7 472 aa7.84□□□□□ -1.16
UPF2-203ENST00000397053 TRMT44Q8IYL2 757 aaKnown RBP7.84□□□□□ -1.16
UPF2-203ENST00000397053 FAM95CA0A1B0GW59 222 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 KRIT1O00522 736 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 THAP12O43422 761 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 RFX6Q8HWS3 928 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 CCDC13Q8IYE1 715 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 LRGUKQ96M69 825 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 ZNF577Q9BSK1 485 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 KANSL2Q9H9L4 492 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 TYW1Q9NV66 732 aaKnown RBP7.83□□□□□ -1.16
UPF2-203ENST00000397053 INPP5FQ9Y2H2 1132 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 TNKSO95271 1327 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 BBOX1O75936 387 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 INHBAP08476 426 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 ZNF18P17022 549 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 CIITAP33076 1130 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 OR8K1Q8NGG5 319 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 CCDC124Q96CT7 223 aaKnown RBP7.83□□□□□ -1.16
UPF2-203ENST00000397053 WDR11Q9BZH6 1224 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 PLEKHA4Q9H4M7 779 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 RABEP2Q9H5N1 569 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 KMT5AQ9NQR1 393 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 KLHL14Q9P2G3 628 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.83□□□□□ -1.16
UPF2-203ENST00000397053 SUGT1Q9Y2Z0 365 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 FARP1Q9Y4F1 1045 aaPredicted RBP7.83□□□□□ -1.16
UPF2-203ENST00000397053 HNRNPCL2B2RXH8 293 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 SART1O43290 800 aaKnown RBP7.83□□□□□ -1.16
UPF2-203ENST00000397053 HNRNPCL1O60812 293 aaKnown RBP7.83□□□□□ -1.16
UPF2-203ENST00000397053 MFAP3P55082 362 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 RC3H1Q5TC82 1133 aaKnown RBP7.83□□□□□ -1.16
UPF2-203ENST00000397053 PDXDC2PQ6P474 469 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 TTC23LQ6PF05 361 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 NUDT18Q6ZVK8 323 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 FANCBQ8NB91 859 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 SNX21Q969T3 373 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 PPP1R16BQ96T49 567 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 SYNDIG1Q9H7V2 258 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 TLK1Q9UKI8 766 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 LEMD3Q9Y2U8 911 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 KDM2BQ8NHM5 1336 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 EVI5O60447 810 aa7.83□□□□□ -1.16
UPF2-203ENST00000397053 SCG2P13521 617 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms