RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 HELLSQ9NRZ9 838 aa12.16□□□□□ -0.46
NEDD8-202ENST00000396828 CCPG1Q9ULG6 757 aa12.16□□□□□ -0.46
NEDD8-202ENST00000396828 ASB14A6NK59 587 aa12.15□□□□□ -0.46
NEDD8-202ENST00000396828 HIP1O00291 1037 aa12.15□□□□□ -0.46
NEDD8-202ENST00000396828 ICAM1P05362 532 aa12.15□□□□□ -0.46
NEDD8-202ENST00000396828 DNAJB2P25686 324 aa12.15□□□□□ -0.46
NEDD8-202ENST00000396828 BAATQ14032 418 aaPredicted RBP12.15□□□□□ -0.46
NEDD8-202ENST00000396828 FSCN1Q16658 493 aaKnown RBP12.15□□□□□ -0.46
NEDD8-202ENST00000396828 TKFCQ3LXA3 575 aa12.15□□□□□ -0.46
NEDD8-202ENST00000396828 RASIP1Q5U651 963 aa12.15□□□□□ -0.46
NEDD8-202ENST00000396828 BTNL9Q6UXG8 535 aa12.15□□□□□ -0.46
NEDD8-202ENST00000396828 ZNF365Q70YC5 407 aa12.15□□□□□ -0.46
NEDD8-202ENST00000396828 TLK2Q86UE8 772 aa12.15□□□□□ -0.46
NEDD8-202ENST00000396828 TICAM2Q86XR7 235 aa12.15□□□□□ -0.46
NEDD8-202ENST00000396828 USP38Q8NB14 1042 aa12.15□□□□□ -0.46
NEDD8-202ENST00000396828 PPP1R13LQ8WUF5 828 aa12.15□□□□□ -0.46
NEDD8-202ENST00000396828 VWCEQ96DN2 955 aa12.15□□□□□ -0.46
NEDD8-202ENST00000396828 TRPV6Q9H1D0 765 aa12.15□□□□□ -0.46
NEDD8-202ENST00000396828 TOMM22Q9NS69 142 aa12.15□□□□□ -0.46
NEDD8-202ENST00000396828 CXXC1Q9P0U4 656 aaPredicted RBP12.15□□□□□ -0.46
NEDD8-202ENST00000396828 MROH7Q68CQ1 1323 aa12.14□□□□□ -0.47
NEDD8-202ENST00000396828 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.14□□□□□ -0.47
NEDD8-202ENST00000396828 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.14□□□□□ -0.47
NEDD8-202ENST00000396828 B4GALT4O60513 344 aa12.14□□□□□ -0.47
NEDD8-202ENST00000396828 FOSL2P15408 326 aa12.14□□□□□ -0.47
NEDD8-202ENST00000396828 ITGA7Q13683 1181 aa12.14□□□□□ -0.47
NEDD8-202ENST00000396828 MCMDC2Q4G0Z9 681 aa12.14□□□□□ -0.47
NEDD8-202ENST00000396828 SYDE2Q5VT97 1194 aa12.14□□□□□ -0.47
NEDD8-202ENST00000396828 SLC30A10Q6XR72 485 aa12.14□□□□□ -0.47
NEDD8-202ENST00000396828 TBC1D10CQ8IV04 446 aa12.14□□□□□ -0.47
NEDD8-202ENST00000396828 MORC4Q8TE76 937 aa12.14□□□□□ -0.47
NEDD8-202ENST00000396828 DCAF4Q8WV16 495 aa12.14□□□□□ -0.47
NEDD8-202ENST00000396828 CLEC4DQ8WXI8 215 aa12.14□□□□□ -0.47
NEDD8-202ENST00000396828 PBX4Q9BYU1 374 aa12.14□□□□□ -0.47
NEDD8-202ENST00000396828 CPVLQ9H3G5 476 aa12.14□□□□□ -0.47
NEDD8-202ENST00000396828 ZNF576Q9H609 170 aa12.14□□□□□ -0.47
NEDD8-202ENST00000396828 TTC28Q96AY4 2481 aa12.13□□□□□ -0.47
NEDD8-202ENST00000396828 GBF1Q92538 1859 aa12.13□□□□□ -0.47
NEDD8-202ENST00000396828 PDHBP11177 359 aa12.13□□□□□ -0.47
NEDD8-202ENST00000396828 TOP1P11387 765 aaKnown RBP12.13□□□□□ -0.47
NEDD8-202ENST00000396828 ALDH5A1P51649 535 aaPredicted RBP12.13□□□□□ -0.47
NEDD8-202ENST00000396828 CCL23P55773 120 aa12.13□□□□□ -0.47
NEDD8-202ENST00000396828 IQSEC1Q6DN90 963 aa12.13□□□□□ -0.47
NEDD8-202ENST00000396828 KIAA1211Q6ZU35 1233 aa12.13□□□□□ -0.47
NEDD8-202ENST00000396828 RUFY2Q8WXA3 655 aa12.13□□□□□ -0.47
NEDD8-202ENST00000396828 ZKSCAN3Q9BRR0 538 aa12.13□□□□□ -0.47
NEDD8-202ENST00000396828 AP5M1Q9H0R1 490 aa12.13□□□□□ -0.47
NEDD8-202ENST00000396828 WNT8AQ9H1J5 351 aa12.13□□□□□ -0.47
NEDD8-202ENST00000396828 UPF2Q9HAU5 1272 aaKnown RBP12.13□□□□□ -0.47
NEDD8-202ENST00000396828 DIAPH3Q9NSV4 1193 aa12.13□□□□□ -0.47
NEDD8-202ENST00000396828 TCP11L1Q9NUJ3 509 aa12.13□□□□□ -0.47
NEDD8-202ENST00000396828 NEDD4P46934 1319 aa12.12□□□□□ -0.47
NEDD8-202ENST00000396828 PTPDC1A2A3K4 754 aa12.12□□□□□ -0.47
NEDD8-202ENST00000396828 GOLGA8HP0CJ92 632 aa12.12□□□□□ -0.47
NEDD8-202ENST00000396828 CHMLP26374 656 aa12.12□□□□□ -0.47
NEDD8-202ENST00000396828 CALML3P27482 149 aa12.12□□□□□ -0.47
NEDD8-202ENST00000396828 ZNF543Q08ER8 600 aa12.12□□□□□ -0.47
NEDD8-202ENST00000396828 PPIGQ13427 754 aaKnown RBP eCLIP12.12□□□□□ -0.47
NEDD8-202ENST00000396828 PPP4R3BQ5MIZ7 849 aa12.12□□□□□ -0.47
NEDD8-202ENST00000396828 TMEM199Q8N511 208 aa12.12□□□□□ -0.47
NEDD8-202ENST00000396828 TIFAQ96CG3 184 aa12.12□□□□□ -0.47
NEDD8-202ENST00000396828 VTA1Q9NP79 307 aa12.12□□□□□ -0.47
NEDD8-202ENST00000396828 IL23AQ9NPF7 189 aa12.12□□□□□ -0.47
NEDD8-202ENST00000396828 PRDM6Q9NQX0 595 aa12.12□□□□□ -0.47
NEDD8-202ENST00000396828 CCDC171Q6TFL3 1326 aa12.11□□□□□ -0.47
NEDD8-202ENST00000396828 TMEM265A0A087WTH1 108 aa12.11□□□□□ -0.47
NEDD8-202ENST00000396828 TLR3O15455 904 aaKnown RBP12.11□□□□□ -0.47
NEDD8-202ENST00000396828 SNHG28P0DPA3 235 aa12.11□□□□□ -0.47
NEDD8-202ENST00000396828 DUSP28Q4G0W2 176 aa12.11□□□□□ -0.47
NEDD8-202ENST00000396828 AKNAD1Q5T1N1 836 aa12.11□□□□□ -0.47
NEDD8-202ENST00000396828 OTOP2Q7RTS6 562 aa12.11□□□□□ -0.47
NEDD8-202ENST00000396828 TBC1D5Q92609 795 aa12.11□□□□□ -0.47
NEDD8-202ENST00000396828 COPS5Q92905 334 aa12.11□□□□□ -0.47
NEDD8-202ENST00000396828 SCLYQ96I15 445 aa12.11□□□□□ -0.47
NEDD8-202ENST00000396828 NOC4LQ9BVI4 516 aaKnown RBP12.11□□□□□ -0.47
NEDD8-202ENST00000396828 WDR11Q9BZH6 1224 aa12.11□□□□□ -0.47
NEDD8-202ENST00000396828 UBA5Q9GZZ9 404 aa12.11□□□□□ -0.47
NEDD8-202ENST00000396828 HIPK3Q9H422 1215 aa12.11□□□□□ -0.47
NEDD8-202ENST00000396828 TRMT13Q9NUP7 481 aaKnown RBP12.11□□□□□ -0.47
NEDD8-202ENST00000396828 YBX2Q9Y2T7 364 aaKnown RBP12.11□□□□□ -0.47
NEDD8-202ENST00000396828 ZMYM6O95789 1325 aa12.11□□□□□ -0.47
NEDD8-202ENST00000396828 MYO9BQ13459 2157 aa12.11□□□□□ -0.47
NEDD8-202ENST00000396828 SCN5AQ14524 2016 aa12.1□□□□□ -0.47
NEDD8-202ENST00000396828 RBM47A0AV96 593 aaKnown RBP12.1□□□□□ -0.47
NEDD8-202ENST00000396828 REC8O95072 547 aa12.1□□□□□ -0.47
NEDD8-202ENST00000396828 CYP2C9P11712 490 aa12.1□□□□□ -0.47
NEDD8-202ENST00000396828 RPS6P62753 249 aaKnown RBP12.1□□□□□ -0.47
NEDD8-202ENST00000396828 ADGRE1Q14246 886 aa12.1□□□□□ -0.47
NEDD8-202ENST00000396828 PSRC1Q6PGN9 363 aaPredicted RBP12.1□□□□□ -0.47
NEDD8-202ENST00000396828 RNF207Q6ZRF8 634 aa12.1□□□□□ -0.47
NEDD8-202ENST00000396828 MFSD6Q6ZSS7 791 aa12.1□□□□□ -0.47
NEDD8-202ENST00000396828 HERVK_113Q902F9 699 aa12.1□□□□□ -0.47
NEDD8-202ENST00000396828 ALDH8A1Q9H2A2 487 aaPredicted RBP12.1□□□□□ -0.47
NEDD8-202ENST00000396828 PRDM12Q9H4Q4 367 aa12.1□□□□□ -0.47
NEDD8-202ENST00000396828 Q9Y3F1 56 aa12.1□□□□□ -0.47
NEDD8-202ENST00000396828 CABYRO75952 493 aa12.09□□□□□ -0.47
NEDD8-202ENST00000396828 ARIH2O95376 493 aa12.09□□□□□ -0.47
NEDD8-202ENST00000396828 FGBP02675 491 aa12.09□□□□□ -0.47
NEDD8-202ENST00000396828 MYL3P08590 195 aa12.09□□□□□ -0.47
NEDD8-202ENST00000396828 MYOGP15173 224 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms