RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 CARD6Q9BX69 1037 aa10.8□□□□□ -0.68
COL6A3-204ENST00000392003 EXOC1Q9NV70 894 aa10.8□□□□□ -0.68
COL6A3-204ENST00000392003 ZNF446Q9NWS9 450 aa10.8□□□□□ -0.68
COL6A3-204ENST00000392003 NAV1Q8NEY1 1877 aa10.8□□□□□ -0.68
COL6A3-204ENST00000392003 SOWAHDA6NJG2 315 aa10.79□□□□□ -0.68
COL6A3-204ENST00000392003 PP2D1A8MPX8 630 aa10.79□□□□□ -0.68
COL6A3-204ENST00000392003 hCG_1984214I3L0E3 225 aa10.79□□□□□ -0.68
COL6A3-204ENST00000392003 M0R2N6 131 aa10.79□□□□□ -0.68
COL6A3-204ENST00000392003 APTXQ7Z2E3 356 aaKnown RBP10.79□□□□□ -0.68
COL6A3-204ENST00000392003 KIAA0825Q8IV33 1275 aa10.79□□□□□ -0.68
COL6A3-204ENST00000392003 REXO1Q8N1G1 1221 aaKnown RBP10.79□□□□□ -0.68
COL6A3-204ENST00000392003 ZNF713Q8N859 430 aaPredicted RBP10.79□□□□□ -0.68
COL6A3-204ENST00000392003 NOC3LQ8WTT2 800 aaKnown RBP10.79□□□□□ -0.68
COL6A3-204ENST00000392003 CDK5RAP3Q96JB5 506 aa10.79□□□□□ -0.68
COL6A3-204ENST00000392003 HLA-DOAP06340 250 aa10.79□□□□□ -0.68
COL6A3-204ENST00000392003 PPP1R2P41236 205 aa10.79□□□□□ -0.68
COL6A3-204ENST00000392003 TMEM266Q2M3C6 531 aa10.79□□□□□ -0.68
COL6A3-204ENST00000392003 KMT5BQ4FZB7 885 aa10.79□□□□□ -0.68
COL6A3-204ENST00000392003 JAKMIP3Q5VZ66 844 aa10.79□□□□□ -0.68
COL6A3-204ENST00000392003 FBXO38Q6PIJ6 1188 aa10.79□□□□□ -0.68
COL6A3-204ENST00000392003 TEKT1Q969V4 418 aa10.79□□□□□ -0.68
COL6A3-204ENST00000392003 AKT1S1Q96B36 256 aa10.79□□□□□ -0.68
COL6A3-204ENST00000392003 PIGSQ96S52 555 aa10.79□□□□□ -0.68
COL6A3-204ENST00000392003 MTRQ99707 1265 aa10.79□□□□□ -0.68
COL6A3-204ENST00000392003 MXD3Q9BW11 206 aa10.79□□□□□ -0.68
COL6A3-204ENST00000392003 EFCAB8A8MWE9 144 aa10.79□□□□□ -0.68
COL6A3-204ENST00000392003 PBX1P40424 430 aa10.79□□□□□ -0.68
COL6A3-204ENST00000392003 RHBDL3P58872 404 aa10.79□□□□□ -0.68
COL6A3-204ENST00000392003 ASIC1P78348 528 aa10.79□□□□□ -0.68
COL6A3-204ENST00000392003 ADSSL1Q8N142 457 aa10.79□□□□□ -0.68
COL6A3-204ENST00000392003 RAB34Q9BZG1 259 aa10.79□□□□□ -0.68
COL6A3-204ENST00000392003 UBA5Q9GZZ9 404 aa10.79□□□□□ -0.68
COL6A3-204ENST00000392003 LZTFL1Q9NQ48 299 aa10.79□□□□□ -0.68
COL6A3-204ENST00000392003 DDX41Q9UJV9 622 aaKnown RBP10.79□□□□□ -0.68
COL6A3-204ENST00000392003 DAGLAQ9Y4D2 1042 aa10.79□□□□□ -0.68
COL6A3-204ENST00000392003 GAKO14976 1311 aa10.79□□□□□ -0.68
COL6A3-204ENST00000392003 TAF1LQ8IZX4 1826 aa10.78□□□□□ -0.68
COL6A3-204ENST00000392003 BICDL2A1A5D9 508 aa10.78□□□□□ -0.68
COL6A3-204ENST00000392003 LRRC10BA6NIK2 292 aa10.78□□□□□ -0.68
COL6A3-204ENST00000392003 MARCH6O60337 910 aa10.78□□□□□ -0.68
COL6A3-204ENST00000392003 ORC2Q13416 577 aaPredicted RBP10.78□□□□□ -0.68
COL6A3-204ENST00000392003 ASPRV1Q53RT3 343 aa10.78□□□□□ -0.68
COL6A3-204ENST00000392003 CYP26C1Q6V0L0 522 aa10.78□□□□□ -0.68
COL6A3-204ENST00000392003 ARMCX6Q7L4S7 300 aa10.78□□□□□ -0.68
COL6A3-204ENST00000392003 OTUD6BQ8N6M0 293 aa10.78□□□□□ -0.68
COL6A3-204ENST00000392003 CNKSR1Q969H4 720 aa10.78□□□□□ -0.68
COL6A3-204ENST00000392003 BIN2Q9UBW5 565 aaPredicted RBP10.78□□□□□ -0.68
COL6A3-204ENST00000392003 ADGRG1Q9Y653 693 aa10.78□□□□□ -0.68
COL6A3-204ENST00000392003 USP17L5A8MUK1 530 aa10.78□□□□□ -0.68
COL6A3-204ENST00000392003 PLCG1P19174 1290 aa10.78□□□□□ -0.68
COL6A3-204ENST00000392003 CHRNA5P30532 468 aa10.78□□□□□ -0.68
COL6A3-204ENST00000392003 KRT9P35527 623 aa10.78□□□□□ -0.68
COL6A3-204ENST00000392003 EIF6P56537 245 aaKnown RBP10.78□□□□□ -0.68
COL6A3-204ENST00000392003 PDE4DQ08499 809 aa10.78□□□□□ -0.68
COL6A3-204ENST00000392003 BMS1Q14692 1282 aaKnown RBP10.78□□□□□ -0.68
COL6A3-204ENST00000392003 MTF1Q14872 753 aa10.78□□□□□ -0.68
COL6A3-204ENST00000392003 SLC35G1Q2M3R5 365 aa10.78□□□□□ -0.68
COL6A3-204ENST00000392003 FAM114A1Q8IWE2 563 aa10.78□□□□□ -0.68
COL6A3-204ENST00000392003 TBCKQ8TEA7 893 aa10.78□□□□□ -0.68
COL6A3-204ENST00000392003 FBXO41Q8TF61 875 aa10.78□□□□□ -0.68
COL6A3-204ENST00000392003 SUGT1Q9Y2Z0 365 aa10.78□□□□□ -0.68
COL6A3-204ENST00000392003 RHOBTB3O94955 611 aa10.78□□□□□ -0.68
COL6A3-204ENST00000392003 EEF1GP26641 437 aaKnown RBP10.78□□□□□ -0.68
COL6A3-204ENST00000392003 ADCY7P51828 1080 aa10.78□□□□□ -0.68
COL6A3-204ENST00000392003 EZH2Q15910 746 aaKnown RBP10.78□□□□□ -0.68
COL6A3-204ENST00000392003 TMCO3Q6UWJ1 677 aa10.78□□□□□ -0.68
COL6A3-204ENST00000392003 KRT222Q8N1A0 295 aa10.78□□□□□ -0.68
COL6A3-204ENST00000392003 DHTKD1Q96HY7 919 aaPredicted RBP10.78□□□□□ -0.68
COL6A3-204ENST00000392003 THAP9Q9H5L6 903 aa10.78□□□□□ -0.68
COL6A3-204ENST00000392003 KBTBD4Q9NVX7 518 aa10.78□□□□□ -0.68
COL6A3-204ENST00000392003 LY75O60449 1722 aa10.77□□□□□ -0.68
COL6A3-204ENST00000392003 ESYT2A0FGR8 921 aa10.77□□□□□ -0.68
COL6A3-204ENST00000392003 GYPCP04921 128 aa10.77□□□□□ -0.68
COL6A3-204ENST00000392003 TECP42680 631 aa10.77□□□□□ -0.68
COL6A3-204ENST00000392003 PPP2R3AQ06190 1150 aa10.77□□□□□ -0.68
COL6A3-204ENST00000392003 PCMTD1Q96MG8 357 aaPredicted RBP10.77□□□□□ -0.68
COL6A3-204ENST00000392003 WDR24Q96S15 920 aa10.77□□□□□ -0.68
COL6A3-204ENST00000392003 GPCPD1Q9NPB8 672 aa10.77□□□□□ -0.68
COL6A3-204ENST00000392003 FRMPD2Q68DX3 1309 aaPredicted RBP10.77□□□□□ -0.69
COL6A3-204ENST00000392003 SNED1Q8TER0 1413 aa10.77□□□□□ -0.69
COL6A3-204ENST00000392003 TXKP42681 527 aa10.77□□□□□ -0.69
COL6A3-204ENST00000392003 FXR1P51114 621 aaKnown RBP eCLIP10.77□□□□□ -0.69
COL6A3-204ENST00000392003 TCP10Q12799 353 aa10.77□□□□□ -0.69
COL6A3-204ENST00000392003 NAALADL2Q58DX5 795 aa10.77□□□□□ -0.69
COL6A3-204ENST00000392003 ZC3H12AQ5D1E8 599 aaKnown RBP10.77□□□□□ -0.69
COL6A3-204ENST00000392003 LRCH2Q5VUJ6 765 aa10.77□□□□□ -0.69
COL6A3-204ENST00000392003 RAD9BQ6WBX8 426 aa10.77□□□□□ -0.69
COL6A3-204ENST00000392003 LRRC47Q8N1G4 583 aaKnown RBP10.77□□□□□ -0.69
COL6A3-204ENST00000392003 KLRG2A4D1S0 409 aaPredicted RBP10.77□□□□□ -0.69
COL6A3-204ENST00000392003 INHBEP58166 350 aa10.77□□□□□ -0.69
COL6A3-204ENST00000392003 CALCRLQ16602 461 aa10.77□□□□□ -0.69
COL6A3-204ENST00000392003 CCDC96Q2M329 555 aa10.77□□□□□ -0.69
COL6A3-204ENST00000392003 KIF4BQ2VIQ3 1234 aa10.77□□□□□ -0.69
COL6A3-204ENST00000392003 TEX35Q5T0J7 233 aa10.77□□□□□ -0.69
COL6A3-204ENST00000392003 SV2BQ7L1I2 683 aa10.77□□□□□ -0.69
COL6A3-204ENST00000392003 CSGALNACT2Q8N6G5 542 aa10.77□□□□□ -0.69
COL6A3-204ENST00000392003 MRPL44Q9H9J2 332 aaKnown RBP10.77□□□□□ -0.69
COL6A3-204ENST00000392003 ZNHIT6Q9NWK9 470 aaKnown RBP10.77□□□□□ -0.69
COL6A3-204ENST00000392003 MTMR4Q9NYA4 1195 aa10.77□□□□□ -0.69
COL6A3-204ENST00000392003 PPP1R1BQ9UD71 204 aaPredicted RBP10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms