RNA–Protein interactions for RNA: ENST00000372056.8

LDB3-203, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,868 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-203ENST00000372056 ZKSCAN4Q969J2 545 aaPredicted RBP14.7□□□□□ -0.06
LDB3-203ENST00000372056 TRIM5Q9C035 493 aa14.7□□□□□ -0.06
LDB3-203ENST00000372056 RANBP17Q9H2T7 1088 aaKnown RBP14.7□□□□□ -0.06
LDB3-203ENST00000372056 MRPL11Q9Y3B7 192 aaKnown RBP14.7□□□□□ -0.06
LDB3-203ENST00000372056 CTDP1Q9Y5B0 961 aaPredicted RBP14.7□□□□□ -0.06
LDB3-203ENST00000372056 PCDHA1Q9Y5I3 950 aa14.7□□□□□ -0.06
LDB3-203ENST00000372056 SSC5DA1L4H1 1573 aa14.7□□□□□ -0.06
LDB3-203ENST00000372056 LAD1O00515 517 aa14.69□□□□□ -0.06
LDB3-203ENST00000372056 OAZ1P54368 228 aa14.69□□□□□ -0.06
LDB3-203ENST00000372056 PABPC4Q13310 644 aaKnown RBP eCLIP14.69□□□□□ -0.06
LDB3-203ENST00000372056 TTLL12Q14166 644 aaPredicted RBP14.69□□□□□ -0.06
LDB3-203ENST00000372056 QRICH1Q2TAL8 776 aa14.69□□□□□ -0.06
LDB3-203ENST00000372056 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.69□□□□□ -0.06
LDB3-203ENST00000372056 REXO1Q8N1G1 1221 aaKnown RBP14.69□□□□□ -0.06
LDB3-203ENST00000372056 SLF1Q9BQI6 1058 aa14.69□□□□□ -0.06
LDB3-203ENST00000372056 HOXC10Q9NYD6 342 aa14.69□□□□□ -0.06
LDB3-203ENST00000372056 ABCB11O95342 1321 aa14.69□□□□□ -0.06
LDB3-203ENST00000372056 ZBED4O75132 1171 aa14.69□□□□□ -0.06
LDB3-203ENST00000372056 SLFN14P0C7P3 912 aa14.69□□□□□ -0.06
LDB3-203ENST00000372056 SLC16A2P36021 539 aa14.69□□□□□ -0.06
LDB3-203ENST00000372056 AP3B2Q13367 1082 aa14.69□□□□□ -0.06
LDB3-203ENST00000372056 MTMR2Q13614 643 aa14.69□□□□□ -0.06
LDB3-203ENST00000372056 PRAMEF18Q5VWM3 479 aa14.69□□□□□ -0.06
LDB3-203ENST00000372056 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.69□□□□□ -0.06
LDB3-203ENST00000372056 PROCA1Q8NCQ7 364 aaPredicted RBP14.69□□□□□ -0.06
LDB3-203ENST00000372056 DHX58Q96C10 678 aa14.69□□□□□ -0.06
LDB3-203ENST00000372056 PSTPIP2Q9H939 334 aa14.69□□□□□ -0.06
LDB3-203ENST00000372056 RRAGCQ9HB90 399 aa14.69□□□□□ -0.06
LDB3-203ENST00000372056 SCAF8Q9UPN6 1271 aaKnown RBP14.69□□□□□ -0.06
LDB3-203ENST00000372056 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.69□□□□□ -0.06
LDB3-203ENST00000372056 SPDYE5A6NIY4 337 aa14.68□□□□□ -0.06
LDB3-203ENST00000372056 USP17L15C9J2P7 530 aa14.68□□□□□ -0.06
LDB3-203ENST00000372056 USP17L13C9JLJ4 530 aa14.68□□□□□ -0.06
LDB3-203ENST00000372056 USP17L11C9JVI0 530 aa14.68□□□□□ -0.06
LDB3-203ENST00000372056 USP17L18D6R9N7 530 aa14.68□□□□□ -0.06
LDB3-203ENST00000372056 USP17L22D6RA61 530 aa14.68□□□□□ -0.06
LDB3-203ENST00000372056 USP17L17D6RBQ6 530 aa14.68□□□□□ -0.06
LDB3-203ENST00000372056 USP17L19D6RCP7 530 aa14.68□□□□□ -0.06
LDB3-203ENST00000372056 USP17L20D6RJB6 530 aa14.68□□□□□ -0.06
LDB3-203ENST00000372056 PRR29P0C7W0 189 aa14.68□□□□□ -0.06
LDB3-203ENST00000372056 LONP1P36776 959 aaKnown RBP14.68□□□□□ -0.06
LDB3-203ENST00000372056 SARSP49591 514 aaKnown RBP14.68□□□□□ -0.06
LDB3-203ENST00000372056 USP17L24Q0WX57 530 aa14.68□□□□□ -0.06
LDB3-203ENST00000372056 PPIL2Q13356 520 aa14.68□□□□□ -0.06
LDB3-203ENST00000372056 VGLL4Q14135 290 aa14.68□□□□□ -0.06
LDB3-203ENST00000372056 NONOQ15233 471 aaKnown RBP eCLIP14.68□□□□□ -0.06
LDB3-203ENST00000372056 LDLRAD1Q5T700 205 aa14.68□□□□□ -0.06
LDB3-203ENST00000372056 ISM2Q6H9L7 571 aa14.68□□□□□ -0.06
LDB3-203ENST00000372056 FASTKD5Q7L8L6 764 aaKnown RBP14.68□□□□□ -0.06
LDB3-203ENST00000372056 SPICE1Q8N0Z3 855 aa14.68□□□□□ -0.06
LDB3-203ENST00000372056 C2orf69Q8N8R5 385 aa14.68□□□□□ -0.06
LDB3-203ENST00000372056 EHMT1Q9H9B1 1298 aa14.68□□□□□ -0.06
LDB3-203ENST00000372056 RABGAP1Q9Y3P9 1069 aa14.68□□□□□ -0.06
LDB3-203ENST00000372056 SNCAIPQ9Y6H5 919 aa14.68□□□□□ -0.06
LDB3-203ENST00000372056 IKBKBO14920 756 aa14.67□□□□□ -0.06
LDB3-203ENST00000372056 PPP1R11O60927 126 aaPredicted RBP14.67□□□□□ -0.06
LDB3-203ENST00000372056 VCAM1P19320 739 aa14.67□□□□□ -0.06
LDB3-203ENST00000372056 BMP6P22004 513 aa14.67□□□□□ -0.06
LDB3-203ENST00000372056 CDC25BP30305 580 aa14.67□□□□□ -0.06
LDB3-203ENST00000372056 COG2Q14746 738 aa14.67□□□□□ -0.06
LDB3-203ENST00000372056 SH3RF1Q7Z6J0 888 aa14.67□□□□□ -0.06
LDB3-203ENST00000372056 MCF2L2Q86YR7 1114 aa14.67□□□□□ -0.06
LDB3-203ENST00000372056 GRAMD1CQ8IYS0 662 aa14.67□□□□□ -0.06
LDB3-203ENST00000372056 SPATA20Q8TB22 786 aa14.67□□□□□ -0.06
LDB3-203ENST00000372056 COA7Q96BR5 231 aa14.67□□□□□ -0.06
LDB3-203ENST00000372056 CCDC34Q96HJ3 373 aa14.67□□□□□ -0.06
LDB3-203ENST00000372056 EMILIN3Q9NT22 766 aa14.67□□□□□ -0.06
LDB3-203ENST00000372056 PPP1R9AQ9ULJ8 1098 aa14.67□□□□□ -0.06
LDB3-203ENST00000372056 PIK3CDO00329 1044 aa14.67□□□□□ -0.06
LDB3-203ENST00000372056 ICAM1P05362 532 aa14.67□□□□□ -0.06
LDB3-203ENST00000372056 NCAPHQ15003 741 aa14.67□□□□□ -0.06
LDB3-203ENST00000372056 E2F4Q16254 413 aa14.67□□□□□ -0.06
LDB3-203ENST00000372056 SPC24Q8NBT2 197 aa14.67□□□□□ -0.06
LDB3-203ENST00000372056 SMARCE1Q969G3 411 aa14.67□□□□□ -0.06
LDB3-203ENST00000372056 MRFAP1L1Q96HT8 127 aa14.67□□□□□ -0.06
LDB3-203ENST00000372056 GLIS2Q9BZE0 524 aaPredicted RBP14.67□□□□□ -0.06
LDB3-203ENST00000372056 TMEM60Q9H2L4 133 aa14.67□□□□□ -0.06
LDB3-203ENST00000372056 MAN1B1Q9UKM7 699 aa14.67□□□□□ -0.06
LDB3-203ENST00000372056 GOLGA6L6A8MZA4 724 aa14.66□□□□□ -0.06
LDB3-203ENST00000372056 ZNF500O60304 480 aaPredicted RBP14.66□□□□□ -0.06
LDB3-203ENST00000372056 PRPHP41219 470 aa14.66□□□□□ -0.06
LDB3-203ENST00000372056 ZYXQ15942 572 aaKnown RBP14.66□□□□□ -0.06
LDB3-203ENST00000372056 TKFCQ3LXA3 575 aa14.66□□□□□ -0.06
LDB3-203ENST00000372056 NEK8Q86SG6 692 aa14.66□□□□□ -0.06
LDB3-203ENST00000372056 MB21D1Q8N884 522 aa14.66□□□□□ -0.06
LDB3-203ENST00000372056 GTF3C2Q8WUA4 911 aaPredicted RBP14.66□□□□□ -0.06
LDB3-203ENST00000372056 KIFC2Q96AC6 838 aa14.66□□□□□ -0.06
LDB3-203ENST00000372056 SLC10A4Q96EP9 437 aa14.66□□□□□ -0.06
LDB3-203ENST00000372056 NUP88Q99567 741 aaPredicted RBP14.66□□□□□ -0.06
LDB3-203ENST00000372056 PYM1Q9BRP8 204 aaKnown RBP14.66□□□□□ -0.06
LDB3-203ENST00000372056 TANGO6Q9C0B7 1094 aa14.66□□□□□ -0.06
LDB3-203ENST00000372056 RPAP3Q9H6T3 665 aaPredicted RBP14.66□□□□□ -0.06
LDB3-203ENST00000372056 BIN2Q9UBW5 565 aaPredicted RBP14.66□□□□□ -0.06
LDB3-203ENST00000372056 KCNH4Q9UQ05 1017 aa14.66□□□□□ -0.06
LDB3-203ENST00000372056 PAPPA2Q9BXP8 1791 aa14.66□□□□□ -0.06
LDB3-203ENST00000372056 SMTNL1A8MU46 457 aa14.65□□□□□ -0.06
LDB3-203ENST00000372056 ATP2A1O14983 1001 aa14.65□□□□□ -0.06
LDB3-203ENST00000372056 FLOT1O75955 427 aa14.65□□□□□ -0.06
LDB3-203ENST00000372056 TPM3P06753 285 aa14.65□□□□□ -0.06
LDB3-203ENST00000372056 GCFC2P16383 781 aaKnown RBP14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms