RNA–Protein interactions for RNA: ENST00000354193.4

SVIP-201, Transcript of small VCP interacting protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SVIP, Length 4,541 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SVIP-201ENST00000354193 CCDC125Q86Z20 511 aa12.47□□□□□ -0.41
SVIP-201ENST00000354193 TMOD4Q9NZQ9 345 aa12.47□□□□□ -0.41
SVIP-201ENST00000354193 SLC37A4O43826 429 aa12.47□□□□□ -0.41
SVIP-201ENST00000354193 PABPC4Q13310 644 aaKnown RBP eCLIP12.47□□□□□ -0.412e-6■■□□□ 14.4
SVIP-201ENST00000354193 SPDYE2Q495Y8 402 aa12.47□□□□□ -0.41
SVIP-201ENST00000354193 CCAR2Q8N163 923 aaKnown RBP12.47□□□□□ -0.41
SVIP-201ENST00000354193 ZMYND12Q9H0C1 365 aa12.47□□□□□ -0.41
SVIP-201ENST00000354193 GCOM1H8Y6P7 765 aaPredicted RBP12.47□□□□□ -0.41
SVIP-201ENST00000354193 CAVIN2O95810 425 aa12.47□□□□□ -0.41
SVIP-201ENST00000354193 POLR2MP0CAP2 368 aa12.47□□□□□ -0.41
SVIP-201ENST00000354193 AMPD3Q01432 767 aa12.47□□□□□ -0.41
SVIP-201ENST00000354193 EEPD1Q7L9B9 569 aa12.47□□□□□ -0.41
SVIP-201ENST00000354193 TRPM4Q8TD43 1214 aa12.47□□□□□ -0.41
SVIP-201ENST00000354193 UPF1Q92900 1129 aaKnown RBP eCLIP12.47□□□□□ -0.41
SVIP-201ENST00000354193 CSADQ9Y600 493 aa12.47□□□□□ -0.41
SVIP-201ENST00000354193 A0A087X0B3 334 aa12.47□□□□□ -0.41
SVIP-201ENST00000354193 PPP1R12BO60237 982 aaPredicted RBP12.47□□□□□ -0.41
SVIP-201ENST00000354193 SKILP12757 684 aa12.47□□□□□ -0.41
SVIP-201ENST00000354193 GALNT17Q6IS24 598 aa12.47□□□□□ -0.41
SVIP-201ENST00000354193 KRT26Q7Z3Y9 468 aa12.47□□□□□ -0.41
SVIP-201ENST00000354193 NF2P35240 595 aa12.46□□□□□ -0.41
SVIP-201ENST00000354193 CAP2P40123 477 aa12.46□□□□□ -0.41
SVIP-201ENST00000354193 TAB2Q9NYJ8 693 aa12.46□□□□□ -0.41
SVIP-201ENST00000354193 ARHGAP4P98171 946 aa12.46□□□□□ -0.41
SVIP-201ENST00000354193 HERC4Q5GLZ8 1057 aaPredicted RBP12.46□□□□□ -0.41
SVIP-201ENST00000354193 TCERG1LQ5VWI1 586 aa12.46□□□□□ -0.41
SVIP-201ENST00000354193 CYP2W1Q8TAV3 490 aa12.46□□□□□ -0.41
SVIP-201ENST00000354193 DCAF4Q8WV16 495 aa12.46□□□□□ -0.41
SVIP-201ENST00000354193 LONP1P36776 959 aaKnown RBP12.46□□□□□ -0.42
SVIP-201ENST00000354193 C9orf131Q5VYM1 1079 aa12.46□□□□□ -0.42
SVIP-201ENST00000354193 PLA2G4DQ86XP0 818 aa12.46□□□□□ -0.42
SVIP-201ENST00000354193 OTUD5Q96G74 571 aa12.46□□□□□ -0.42
SVIP-201ENST00000354193 PPP1R9BQ96SB3 815 aa12.46□□□□□ -0.42
SVIP-201ENST00000354193 SH3GLB2Q9NR46 395 aa12.46□□□□□ -0.42
SVIP-201ENST00000354193 WNK3Q9BYP7 1800 aa12.46□□□□□ -0.42
SVIP-201ENST00000354193 PSMA7O14818 248 aa12.45□□□□□ -0.42
SVIP-201ENST00000354193 ZNF541Q9H0D2 1346 aa12.45□□□□□ -0.42
SVIP-201ENST00000354193 SYNRGQ9UMZ2 1314 aa12.45□□□□□ -0.42
SVIP-201ENST00000354193 CBFA2T2O43439 604 aa12.45□□□□□ -0.42
SVIP-201ENST00000354193 ZBED4O75132 1171 aa12.45□□□□□ -0.42
SVIP-201ENST00000354193 GRIPAP1Q4V328 841 aa12.45□□□□□ -0.42
SVIP-201ENST00000354193 DISC1Q9NRI5 854 aa12.45□□□□□ -0.42
SVIP-201ENST00000354193 MYH7P12883 1935 aa12.45□□□□□ -0.42
SVIP-201ENST00000354193 RPN1P04843 607 aaKnown RBP12.45□□□□□ -0.42
SVIP-201ENST00000354193 LDHDQ86WU2 507 aa12.45□□□□□ -0.42
SVIP-201ENST00000354193 NELFBQ8WX92 580 aa12.45□□□□□ -0.42
SVIP-201ENST00000354193 RIOX1Q9H6W3 641 aa12.45□□□□□ -0.42
SVIP-201ENST00000354193 VCPKMTQ9H867 229 aa12.45□□□□□ -0.42
SVIP-201ENST00000354193 SLX4Q8IY92 1834 aa12.45□□□□□ -0.42
SVIP-201ENST00000354193 TRIM49BA6NDI0 452 aa12.45□□□□□ -0.42
SVIP-201ENST00000354193 SFI1A8K8P3 1242 aa12.45□□□□□ -0.42
SVIP-201ENST00000354193 GAS7O60861 476 aa12.45□□□□□ -0.42
SVIP-201ENST00000354193 MOB2Q70IA6 237 aa12.45□□□□□ -0.42
SVIP-201ENST00000354193 PIGOQ8TEQ8 1089 aa12.45□□□□□ -0.42
SVIP-201ENST00000354193 LMNB1P20700 586 aa12.44□□□□□ -0.42
SVIP-201ENST00000354193 MLKLQ8NB16 471 aa12.44□□□□□ -0.42
SVIP-201ENST00000354193 ERMNQ8TAM6 284 aa12.44□□□□□ -0.42
SVIP-201ENST00000354193 FUCA2Q9BTY2 467 aa12.44□□□□□ -0.42
SVIP-201ENST00000354193 RPAP3Q9H6T3 665 aaPredicted RBP12.44□□□□□ -0.42
SVIP-201ENST00000354193 COL5A3P25940 1745 aaPredicted RBP12.44□□□□□ -0.42
SVIP-201ENST00000354193 POTEB3A0JP26 581 aa12.44□□□□□ -0.42
SVIP-201ENST00000354193 POTECB2RU33 542 aa12.44□□□□□ -0.42
SVIP-201ENST00000354193 E9PMD0 336 aa12.44□□□□□ -0.42
SVIP-201ENST00000354193 PEX10O60683 326 aa12.44□□□□□ -0.42
SVIP-201ENST00000354193 POTEBQ6S5H4 581 aa12.44□□□□□ -0.42
SVIP-201ENST00000354193 EHD4Q9H223 541 aa12.44□□□□□ -0.42
SVIP-201ENST00000354193 CD2APQ9Y5K6 639 aa12.44□□□□□ -0.42
SVIP-201ENST00000354193 PPP1R11O60927 126 aaPredicted RBP12.44□□□□□ -0.42
SVIP-201ENST00000354193 MYCNP04198 464 aaPredicted RBP12.44□□□□□ -0.42
SVIP-201ENST00000354193 NPY5RQ15761 445 aa12.44□□□□□ -0.42
SVIP-201ENST00000354193 MRPL11Q9Y3B7 192 aaKnown RBP12.44□□□□□ -0.42
SVIP-201ENST00000354193 ADM5C9JUS6 153 aa12.43□□□□□ -0.42
SVIP-201ENST00000354193 ADKP55263 362 aaKnown RBP12.43□□□□□ -0.42
SVIP-201ENST00000354193 ANKS1AQ92625 1134 aa12.43□□□□□ -0.42
SVIP-201ENST00000354193 SRRTQ9BXP5 876 aaKnown RBP12.43□□□□□ -0.42
SVIP-201ENST00000354193 RMND1Q9NWS8 449 aa12.43□□□□□ -0.42
SVIP-201ENST00000354193 PYCARDQ9ULZ3 195 aa12.43□□□□□ -0.42
SVIP-201ENST00000354193 ABCB11O95342 1321 aa12.43□□□□□ -0.42
SVIP-201ENST00000354193 IRX3P78415 501 aaPredicted RBP12.43□□□□□ -0.42
SVIP-201ENST00000354193 CTTNQ14247 550 aaKnown RBP12.43□□□□□ -0.42
SVIP-201ENST00000354193 CCDC40Q4G0X9 1142 aa12.43□□□□□ -0.42
SVIP-201ENST00000354193 GPBP1Q86WP2 473 aa12.43□□□□□ -0.42
SVIP-201ENST00000354193 POTEFA5A3E0 1075 aa12.43□□□□□ -0.42
SVIP-201ENST00000354193 TBCAO75347 108 aaKnown RBP12.43□□□□□ -0.42
SVIP-201ENST00000354193 POTEIP0CG38 1075 aa12.43□□□□□ -0.42
SVIP-201ENST00000354193 FMR1Q06787 632 aaKnown RBP eCLIP12.43□□□□□ -0.42
SVIP-201ENST00000354193 PAK1Q13153 545 aa12.43□□□□□ -0.42
SVIP-201ENST00000354193 POTEGQ6S5H5 508 aa12.43□□□□□ -0.42
SVIP-201ENST00000354193 POTEEQ6S8J3 1075 aa12.43□□□□□ -0.42
SVIP-201ENST00000354193 CSGALNACT2Q8N6G5 542 aa12.43□□□□□ -0.42
SVIP-201ENST00000354193 TIGD1Q96MW7 591 aa12.43□□□□□ -0.42
SVIP-201ENST00000354193 EHMT1Q9H9B1 1298 aa12.43□□□□□ -0.42
SVIP-201ENST00000354193 RGL1Q9NZL6 768 aa12.43□□□□□ -0.42
SVIP-201ENST00000354193 BACH1O14867 736 aa12.43□□□□□ -0.42
SVIP-201ENST00000354193 IQCB1Q15051 598 aa12.43□□□□□ -0.42
SVIP-201ENST00000354193 SUPT20HL1Q3ZLR7 823 aa12.43□□□□□ -0.42
SVIP-201ENST00000354193 NCAPG2Q86XI2 1143 aa12.43□□□□□ -0.42
SVIP-201ENST00000354193 ELP3Q9H9T3 547 aa12.43□□□□□ -0.42
SVIP-201ENST00000354193 RIC8AQ9NPQ8 531 aa12.43□□□□□ -0.42
SVIP-201ENST00000354193 SCN7AQ01118 1682 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms