RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 SCYL3Q8IZE3 742 aa15.14■□□□□ 0.01
HMGB1-202ENST00000339872 LPAR1Q92633 364 aa15.14■□□□□ 0.01
HMGB1-202ENST00000339872 ZKSCAN4Q969J2 545 aaPredicted RBP15.14■□□□□ 0.01
HMGB1-202ENST00000339872 MTMR9Q96QG7 549 aa15.14■□□□□ 0.01
HMGB1-202ENST00000339872 DDX25Q9UHL0 483 aaKnown RBP15.14■□□□□ 0.01
HMGB1-202ENST00000339872 SSC5DA1L4H1 1573 aa15.14■□□□□ 0.01
HMGB1-202ENST00000339872 SMC2O95347 1197 aa15.14■□□□□ 0.01
HMGB1-202ENST00000339872 GCFC2P16383 781 aaKnown RBP15.14■□□□□ 0.01
HMGB1-202ENST00000339872 CASP1P29466 404 aa15.14■□□□□ 0.01
HMGB1-202ENST00000339872 MTMR2Q13614 643 aa15.14■□□□□ 0.01
HMGB1-202ENST00000339872 STAMQ92783 540 aa15.14■□□□□ 0.01
HMGB1-202ENST00000339872 CCSER1Q9C0I3 900 aa15.14■□□□□ 0.01
HMGB1-202ENST00000339872 ZNF112Q9UJU3 913 aa15.14■□□□□ 0.01
HMGB1-202ENST00000339872 SPDYE3A6NKU9 549 aa15.13■□□□□ 0.01
HMGB1-202ENST00000339872 PTMAP06454 111 aaKnown RBP15.13■□□□□ 0.01
HMGB1-202ENST00000339872 SARSP49591 514 aaKnown RBP15.13■□□□□ 0.01
HMGB1-202ENST00000339872 TMEM266Q2M3C6 531 aa15.13■□□□□ 0.01
HMGB1-202ENST00000339872 MCTP2Q6DN12 878 aa15.13■□□□□ 0.01
HMGB1-202ENST00000339872 P2RX7Q99572 595 aaKnown RBP15.13■□□□□ 0.01
HMGB1-202ENST00000339872 PICK1Q9NRD5 415 aa15.13■□□□□ 0.01
HMGB1-202ENST00000339872 ADARB2Q9NS39 739 aaKnown RBP15.13■□□□□ 0.01
HMGB1-202ENST00000339872 BMP6P22004 513 aa15.12■□□□□ 0.01
HMGB1-202ENST00000339872 HOXA13P31271 388 aaPredicted RBP15.12■□□□□ 0.01
HMGB1-202ENST00000339872 RRAGBQ5VZM2 374 aa15.12■□□□□ 0.01
HMGB1-202ENST00000339872 CABP7Q86V35 215 aa15.12■□□□□ 0.01
HMGB1-202ENST00000339872 IGSF22Q8N9C0 903 aa15.12■□□□□ 0.01
HMGB1-202ENST00000339872 SPATA20Q8TB22 786 aa15.12■□□□□ 0.01
HMGB1-202ENST00000339872 NAP1L4Q99733 375 aaKnown RBP15.12■□□□□ 0.01
HMGB1-202ENST00000339872 TANGO6Q9C0B7 1094 aa15.12■□□□□ 0.01
HMGB1-202ENST00000339872 CCDC39Q9UFE4 941 aa15.12■□□□□ 0.01
HMGB1-202ENST00000339872 PHIPQ8WWQ0 1821 aa15.12■□□□□ 0.01
HMGB1-202ENST00000339872 DPYDQ12882 1025 aa15.12■□□□□ 0.01
HMGB1-202ENST00000339872 SPP2Q13103 211 aa15.12■□□□□ 0.01
HMGB1-202ENST00000339872 MORC3Q14149 939 aa15.12■□□□□ 0.01
HMGB1-202ENST00000339872 TRIML1Q8N9V2 468 aa15.12■□□□□ 0.01
HMGB1-202ENST00000339872 PLIN2Q99541 437 aa15.12■□□□□ 0.01
HMGB1-202ENST00000339872 SLF1Q9BQI6 1058 aa15.12■□□□□ 0.01
HMGB1-202ENST00000339872 TRIM5Q9C035 493 aa15.12■□□□□ 0.01
HMGB1-202ENST00000339872 PITPNM2Q9BZ72 1349 aa15.12■□□□□ 0.01
HMGB1-202ENST00000339872 FOSP01100 380 aaPredicted RBP15.11■□□□□ 0.01
HMGB1-202ENST00000339872 VCAM1P19320 739 aa15.11■□□□□ 0.01
HMGB1-202ENST00000339872 FXR2P51116 673 aaKnown RBP eCLIP15.11■□□□□ 0.01
HMGB1-202ENST00000339872 USP11P51784 963 aa15.11■□□□□ 0.01
HMGB1-202ENST00000339872 ARHGAP4P98171 946 aa15.11■□□□□ 0.01
HMGB1-202ENST00000339872 AS3MTQ9HBK9 375 aa15.11■□□□□ 0.01
HMGB1-202ENST00000339872 MARCH6O60337 910 aa15.11■□□□□ 0.01
HMGB1-202ENST00000339872 CFBP00751 764 aa15.11■□□□□ 0.01
HMGB1-202ENST00000339872 PTPRAP18433 802 aa15.11■□□□□ 0.01
HMGB1-202ENST00000339872 USP14P54578 494 aa15.11■□□□□ 0.01
HMGB1-202ENST00000339872 PRKG1Q13976 671 aa15.11■□□□□ 0.01
HMGB1-202ENST00000339872 SUPT20HL1Q3ZLR7 823 aa15.11■□□□□ 0.01
HMGB1-202ENST00000339872 LDHDQ86WU2 507 aa15.11■□□□□ 0.01
HMGB1-202ENST00000339872 PRPF38AQ8NAV1 312 aaKnown RBP15.11■□□□□ 0.01
HMGB1-202ENST00000339872 KLRG1Q96E93 195 aa15.11■□□□□ 0.01
HMGB1-202ENST00000339872 MTRQ99707 1265 aa15.11■□□□□ 0.01
HMGB1-202ENST00000339872 RAB34Q9BZG1 259 aa15.11■□□□□ 0.01
HMGB1-202ENST00000339872 BLZF1Q9H2G9 400 aa15.11■□□□□ 0.01
HMGB1-202ENST00000339872 LRWD1Q9UFC0 647 aa15.11■□□□□ 0.01
HMGB1-202ENST00000339872 MRPL11Q9Y3B7 192 aaKnown RBP15.11■□□□□ 0.01
HMGB1-202ENST00000339872 SRCAPQ6ZRS2 3230 aa15.1■□□□□ 0.01
HMGB1-202ENST00000339872 SMTNL1A8MU46 457 aa15.1■□□□□ 0.01
HMGB1-202ENST00000339872 PIK3CDO00329 1044 aa15.1■□□□□ 0.01
HMGB1-202ENST00000339872 PLCG1P19174 1290 aa15.1■□□□□ 0.01
HMGB1-202ENST00000339872 PARP14Q460N5 1801 aa15.1■□□□□ 0.01
HMGB1-202ENST00000339872 NAALADL2Q58DX5 795 aa15.1■□□□□ 0.01
HMGB1-202ENST00000339872 FCHSD1Q86WN1 690 aa15.1■□□□□ 0.01
HMGB1-202ENST00000339872 WDR18Q9BV38 432 aa15.1■□□□□ 0.01
HMGB1-202ENST00000339872 TTC12Q9H892 705 aaPredicted RBP15.1■□□□□ 0.01
HMGB1-202ENST00000339872 EMILIN3Q9NT22 766 aa15.1■□□□□ 0.01
HMGB1-202ENST00000339872 ABCB11O95342 1321 aa15.1■□□□□ 0.01
HMGB1-202ENST00000339872 POTEMA6NI47 508 aa15.1■□□□□ 0.01
HMGB1-202ENST00000339872 GTPBP6O43824 516 aaPredicted RBP15.1■□□□□ 0.01
HMGB1-202ENST00000339872 FLOT1O75955 427 aa15.1■□□□□ 0.01
HMGB1-202ENST00000339872 SREBF1P36956 1147 aa15.1■□□□□ 0.01
HMGB1-202ENST00000339872 BACE1P56817 501 aa15.1■□□□□ 0.01
HMGB1-202ENST00000339872 TPM4P67936 248 aa15.1■□□□□ 0.01
HMGB1-202ENST00000339872 CUL4BQ13620 913 aa15.1■□□□□ 0.01
HMGB1-202ENST00000339872 ZNF280CQ8ND82 737 aa15.1■□□□□ 0.01
HMGB1-202ENST00000339872 CRYGNQ8WXF5 182 aa15.1■□□□□ 0.01
HMGB1-202ENST00000339872 HAS1Q92839 578 aa15.1■□□□□ 0.01
HMGB1-202ENST00000339872 GJA10Q969M2 543 aa15.1■□□□□ 0.01
HMGB1-202ENST00000339872 DCPSQ96C86 337 aaKnown RBP15.1■□□□□ 0.01
HMGB1-202ENST00000339872 GSDMAQ96QA5 445 aa15.1■□□□□ 0.01
HMGB1-202ENST00000339872 RPAP3Q9H6T3 665 aaPredicted RBP15.1■□□□□ 0.01
HMGB1-202ENST00000339872 DACH1Q9UI36 760 aa15.1■□□□□ 0.01
HMGB1-202ENST00000339872 CCPG1Q9ULG6 757 aa15.1■□□□□ 0.01
HMGB1-202ENST00000339872 ZHX2Q9Y6X8 837 aa15.1■□□□□ 0.01
HMGB1-202ENST00000339872 IKBKBO14920 756 aa15.09■□□□□ 0.01
HMGB1-202ENST00000339872 ZNF75DP51815 510 aa15.09■□□□□ 0.01
HMGB1-202ENST00000339872 NCAPHQ15003 741 aa15.09■□□□□ 0.01
HMGB1-202ENST00000339872 HS1BP3Q53T59 392 aa15.09■□□□□ 0.01
HMGB1-202ENST00000339872 SARM1Q6SZW1 724 aa15.09■□□□□ 0.01
HMGB1-202ENST00000339872 DLK2Q6UY11 383 aa15.09■□□□□ 0.01
HMGB1-202ENST00000339872 PLA2G4DQ86XP0 818 aa15.09■□□□□ 0.01
HMGB1-202ENST00000339872 MLKLQ8NB16 471 aa15.09■□□□□ 0.01
HMGB1-202ENST00000339872 TBC1D5Q92609 795 aa15.09■□□□□ 0.01
HMGB1-202ENST00000339872 CALML4Q96GE6 196 aa15.09■□□□□ 0.01
HMGB1-202ENST00000339872 AGBL1Q96MI9 1066 aa15.09■□□□□ 0.01
HMGB1-202ENST00000339872 MMTAG2Q9BU76 263 aaKnown RBP15.09■□□□□ 0.01
HMGB1-202ENST00000339872 CYP3A7-CYP3A51PA0A087WV96 503 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms