RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 GTPBP6O43824 516 aaPredicted RBP11.17□□□□□ -0.62
CHD3-201ENST00000330494 TNNC2P02585 160 aa11.17□□□□□ -0.62
CHD3-201ENST00000330494 CAPN9O14815 690 aa11.17□□□□□ -0.62
CHD3-201ENST00000330494 KCNQ2O43526 872 aa11.17□□□□□ -0.62
CHD3-201ENST00000330494 OR8K1Q8NGG5 319 aa11.17□□□□□ -0.62
CHD3-201ENST00000330494 SH2B2O14492 632 aaPredicted RBP11.17□□□□□ -0.62
CHD3-201ENST00000330494 NMT2O60551 498 aa11.17□□□□□ -0.62
CHD3-201ENST00000330494 ASPRV1Q53RT3 343 aa11.17□□□□□ -0.62
CHD3-201ENST00000330494 INTS8Q75QN2 995 aaKnown RBP11.17□□□□□ -0.62
CHD3-201ENST00000330494 ZBTB33Q86T24 672 aa11.17□□□□□ -0.62
CHD3-201ENST00000330494 SWAP70Q9UH65 585 aa11.17□□□□□ -0.62
CHD3-201ENST00000330494 BBOX1O75936 387 aa11.17□□□□□ -0.62
CHD3-201ENST00000330494 ATXN8OSP0DMR3 200 aa11.17□□□□□ -0.62
CHD3-201ENST00000330494 CDK8P49336 464 aa11.17□□□□□ -0.62
CHD3-201ENST00000330494 ITKQ08881 620 aa11.17□□□□□ -0.62
CHD3-201ENST00000330494 AOC3Q16853 763 aa11.17□□□□□ -0.62
CHD3-201ENST00000330494 VPS37BQ9H9H4 285 aa11.17□□□□□ -0.62
CHD3-201ENST00000330494 C1orf112Q9NSG2 853 aa11.17□□□□□ -0.62
CHD3-201ENST00000330494 GOLGA6CA6NDK9 693 aa11.17□□□□□ -0.62
CHD3-201ENST00000330494 LRRN2O75325 713 aa11.17□□□□□ -0.62
CHD3-201ENST00000330494 ZBTB7AO95365 584 aa11.17□□□□□ -0.62
CHD3-201ENST00000330494 ZNF853P0CG23 659 aa11.17□□□□□ -0.62
CHD3-201ENST00000330494 GOLGA6DP0CG33 693 aa11.17□□□□□ -0.62
CHD3-201ENST00000330494 P4HA1P13674 534 aa11.17□□□□□ -0.62
CHD3-201ENST00000330494 CLUL1Q15846 466 aa11.17□□□□□ -0.62
CHD3-201ENST00000330494 DPCR1Q3MIW9 517 aa11.17□□□□□ -0.62
CHD3-201ENST00000330494 FAM26FQ5R3K3 315 aa11.17□□□□□ -0.62
CHD3-201ENST00000330494 RSAD2Q8WXG1 361 aa11.17□□□□□ -0.62
CHD3-201ENST00000330494 DPH5Q9H2P9 285 aa11.17□□□□□ -0.62
CHD3-201ENST00000330494 PFDN4Q9NQP4 134 aa11.17□□□□□ -0.62
CHD3-201ENST00000330494 SLC5A4Q9NY91 659 aa11.17□□□□□ -0.62
CHD3-201ENST00000330494 GOLGA6AQ9NYA3 693 aa11.17□□□□□ -0.62
CHD3-201ENST00000330494 PCDHA5Q9Y5H7 936 aa11.17□□□□□ -0.62
CHD3-201ENST00000330494 TMOD1P28289 359 aa11.17□□□□□ -0.62
CHD3-201ENST00000330494 SYCE1Q8N0S2 351 aa11.17□□□□□ -0.62
CHD3-201ENST00000330494 KIAA1524Q8TCG1 905 aa11.17□□□□□ -0.62
CHD3-201ENST00000330494 PCDHB6Q9Y5E3 794 aa11.17□□□□□ -0.62
CHD3-201ENST00000330494 A0A1B0GUA9 196 aa11.16□□□□□ -0.62
CHD3-201ENST00000330494 BMP3P12645 472 aa11.16□□□□□ -0.62
CHD3-201ENST00000330494 SYDE2Q5VT97 1194 aa11.16□□□□□ -0.62
CHD3-201ENST00000330494 PI4K2BQ8TCG2 481 aa11.16□□□□□ -0.62
CHD3-201ENST00000330494 CFAP57Q96MR6 1250 aa11.16□□□□□ -0.62
CHD3-201ENST00000330494 MAGED2Q9UNF1 606 aaPredicted RBP11.16□□□□□ -0.62
CHD3-201ENST00000330494 SFI1A8K8P3 1242 aa11.16□□□□□ -0.62
CHD3-201ENST00000330494 TMEM191BP0C7N4 346 aa11.16□□□□□ -0.62
CHD3-201ENST00000330494 LONP1P36776 959 aaKnown RBP11.16□□□□□ -0.62
CHD3-201ENST00000330494 RASSF7Q02833 373 aa11.16□□□□□ -0.62
CHD3-201ENST00000330494 GRAPQ13588 217 aa11.16□□□□□ -0.62
CHD3-201ENST00000330494 GRAPLQ8TC17 118 aaPredicted RBP11.16□□□□□ -0.62
CHD3-201ENST00000330494 STAM2O75886 525 aa11.16□□□□□ -0.62
CHD3-201ENST00000330494 PDE6CP51160 858 aa11.16□□□□□ -0.62
CHD3-201ENST00000330494 C11orf57Q6ZUT1 292 aaPredicted RBP11.16□□□□□ -0.62
CHD3-201ENST00000330494 ANKRD42Q8N9B4 389 aa11.16□□□□□ -0.62
CHD3-201ENST00000330494 ZNF341Q9BYN7 854 aa11.16□□□□□ -0.62
CHD3-201ENST00000330494 PTPN22Q9Y2R2 807 aa11.16□□□□□ -0.62
CHD3-201ENST00000330494 COL4A3BPQ9Y5P4 624 aa11.16□□□□□ -0.62
CHD3-201ENST00000330494 PRDX5P30044 214 aa11.16□□□□□ -0.62
CHD3-201ENST00000330494 MYL7Q01449 175 aa11.16□□□□□ -0.62
CHD3-201ENST00000330494 SETDB1Q15047 1291 aa11.16□□□□□ -0.62
CHD3-201ENST00000330494 DALRD3Q5D0E6 543 aaKnown RBP11.16□□□□□ -0.62
CHD3-201ENST00000330494 GAS2L3Q86XJ1 694 aa11.16□□□□□ -0.62
CHD3-201ENST00000330494 CCDC125Q86Z20 511 aa11.16□□□□□ -0.62
CHD3-201ENST00000330494 LRRC8AQ8IWT6 810 aa11.16□□□□□ -0.62
CHD3-201ENST00000330494 ADPGKQ9BRR6 497 aa11.16□□□□□ -0.62
CHD3-201ENST00000330494 GOLGA6BA6NDN3 693 aa11.16□□□□□ -0.62
CHD3-201ENST00000330494 HNRNPDLO14979 420 aaKnown RBP11.16□□□□□ -0.62
CHD3-201ENST00000330494 KRT15P19012 456 aa11.16□□□□□ -0.62
CHD3-201ENST00000330494 KIF22Q14807 665 aa11.16□□□□□ -0.62
CHD3-201ENST00000330494 CC2D2BQ6DHV5 1058 aa11.16□□□□□ -0.62
CHD3-201ENST00000330494 PPP2R2CQ9Y2T4 447 aa11.16□□□□□ -0.62
CHD3-201ENST00000330494 PCDHB4Q9Y5E5 795 aa11.16□□□□□ -0.62
CHD3-201ENST00000330494 SAR1BQ9Y6B6 198 aa11.16□□□□□ -0.62
CHD3-201ENST00000330494 SPATA31A3Q5VYP0 1347 aa11.16□□□□□ -0.62
CHD3-201ENST00000330494 KRIT1O00522 736 aa11.16□□□□□ -0.62
CHD3-201ENST00000330494 ENC1O14682 589 aa11.16□□□□□ -0.62
CHD3-201ENST00000330494 MTERF2Q49AM1 385 aa11.16□□□□□ -0.62
CHD3-201ENST00000330494 LARP4BQ92615 738 aaKnown RBP11.16□□□□□ -0.62
CHD3-201ENST00000330494 TBC1D31Q96DN5 1066 aa11.16□□□□□ -0.62
CHD3-201ENST00000330494 FAM193BQ96PV7 902 aaPredicted RBP11.16□□□□□ -0.62
CHD3-201ENST00000330494 DDX23Q9BUQ8 820 aaKnown RBP11.16□□□□□ -0.62
CHD3-201ENST00000330494 ERVV-1B6SEH8 477 aa11.15□□□□□ -0.62
CHD3-201ENST00000330494 IGKV5-2P06315 115 aa11.15□□□□□ -0.62
CHD3-201ENST00000330494 DDX41Q9UJV9 622 aaKnown RBP11.15□□□□□ -0.62
CHD3-201ENST00000330494 IQGAP3Q86VI3 1631 aa11.15□□□□□ -0.62
CHD3-201ENST00000330494 PALM3A6NDB9 673 aaPredicted RBP11.15□□□□□ -0.62
CHD3-201ENST00000330494 INO80B-WBP1J3KQ70 363 aa11.15□□□□□ -0.62
CHD3-201ENST00000330494 MMP1P03956 469 aa11.15□□□□□ -0.62
CHD3-201ENST00000330494 HACE1Q8IYU2 909 aa11.15□□□□□ -0.62
CHD3-201ENST00000330494 INO80BQ9C086 356 aaPredicted RBP11.15□□□□□ -0.62
CHD3-201ENST00000330494 FOXP1Q9H334 677 aaPredicted RBP11.15□□□□□ -0.62
CHD3-201ENST00000330494 POLD4Q9HCU8 107 aa11.15□□□□□ -0.62
CHD3-201ENST00000330494 GPR108Q9NPR9 543 aa11.15□□□□□ -0.62
CHD3-201ENST00000330494 MAN1B1Q9UKM7 699 aa11.15□□□□□ -0.62
CHD3-201ENST00000330494 AFF2P51816 1311 aa11.15□□□□□ -0.62
CHD3-201ENST00000330494 ALKQ9UM73 1620 aa11.15□□□□□ -0.62
CHD3-201ENST00000330494 CLTCQ00610 1675 aaKnown RBP11.15□□□□□ -0.62
CHD3-201ENST00000330494 SAT1P21673 171 aa11.15□□□□□ -0.62
CHD3-201ENST00000330494 COPB1P53618 953 aaKnown RBP11.15□□□□□ -0.62
CHD3-201ENST00000330494 KCTD2Q14681 263 aa11.15□□□□□ -0.62
CHD3-201ENST00000330494 SLC44A5Q8NCS7 719 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms