RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 SPRED3Q2MJR0 410 aa7.35□□□□□ -1.23
ZNF540-201ENST00000316433 EPHA10Q5JZY3 1008 aa7.35□□□□□ -1.23
ZNF540-201ENST00000316433 NLRP14Q86W24 1093 aa7.35□□□□□ -1.23
ZNF540-201ENST00000316433 STAG2Q8N3U4 1231 aa7.35□□□□□ -1.23
ZNF540-201ENST00000316433 VGLL2Q8N8G2 317 aa7.35□□□□□ -1.23
ZNF540-201ENST00000316433 C1orf131Q8NDD1 294 aaKnown RBP7.35□□□□□ -1.23
ZNF540-201ENST00000316433 MYCBPAPQ8TBZ2 947 aa7.35□□□□□ -1.23
ZNF540-201ENST00000316433 OPTNQ96CV9 577 aa7.35□□□□□ -1.23
ZNF540-201ENST00000316433 CCT8L2Q96SF2 557 aa7.35□□□□□ -1.23
ZNF540-201ENST00000316433 POLR3CQ9BUI4 534 aaPredicted RBP7.35□□□□□ -1.23
ZNF540-201ENST00000316433 SWAP70Q9UH65 585 aa7.35□□□□□ -1.23
ZNF540-201ENST00000316433 BARX2Q9UMQ3 279 aaPredicted RBP7.35□□□□□ -1.23
ZNF540-201ENST00000316433 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.35□□□□□ -1.23
ZNF540-201ENST00000316433 CCDC88AQ3V6T2 1871 aa7.35□□□□□ -1.23
ZNF540-201ENST00000316433 COL16A1Q07092 1604 aaPredicted RBP7.35□□□□□ -1.23
ZNF540-201ENST00000316433 A0A1B0GTH6 734 aa7.35□□□□□ -1.23
ZNF540-201ENST00000316433 KCNQ3O43525 872 aa7.35□□□□□ -1.23
ZNF540-201ENST00000316433 UPP2O95045 317 aa7.35□□□□□ -1.23
ZNF540-201ENST00000316433 YY1P25490 414 aa7.35□□□□□ -1.23
ZNF540-201ENST00000316433 KIF5BP33176 963 aa7.35□□□□□ -1.23
ZNF540-201ENST00000316433 TRPC1P48995 793 aa7.35□□□□□ -1.23
ZNF540-201ENST00000316433 FANCCQ00597 558 aa7.35□□□□□ -1.23
ZNF540-201ENST00000316433 GOLGA8FQ08AF8 430 aa7.35□□□□□ -1.23
ZNF540-201ENST00000316433 GOLGA8DPQ0D2H9 430 aa7.35□□□□□ -1.23
ZNF540-201ENST00000316433 ORC2Q13416 577 aaPredicted RBP7.35□□□□□ -1.23
ZNF540-201ENST00000316433 MORC3Q14149 939 aa7.35□□□□□ -1.23
ZNF540-201ENST00000316433 MYOCDQ8IZQ8 938 aa7.35□□□□□ -1.23
ZNF540-201ENST00000316433 NECAB1Q8N987 351 aa7.35□□□□□ -1.23
ZNF540-201ENST00000316433 CXorf38Q8TB03 319 aa7.35□□□□□ -1.23
ZNF540-201ENST00000316433 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.35□□□□□ -1.23
ZNF540-201ENST00000316433 SELENOOQ9BVL4 669 aa7.35□□□□□ -1.23
ZNF540-201ENST00000316433 THRAP3Q9Y2W1 955 aaKnown RBP7.35□□□□□ -1.23
ZNF540-201ENST00000316433 SPDYE5A6NIY4 337 aa7.34□□□□□ -1.23
ZNF540-201ENST00000316433 H3BQV1 296 aa7.34□□□□□ -1.23
ZNF540-201ENST00000316433 MAP3K13O43283 966 aa7.34□□□□□ -1.23
ZNF540-201ENST00000316433 SLC26A4O43511 780 aa7.34□□□□□ -1.23
ZNF540-201ENST00000316433 KIF5CO60282 957 aa7.34□□□□□ -1.23
ZNF540-201ENST00000316433 DTNBO60941 627 aa7.34□□□□□ -1.23
ZNF540-201ENST00000316433 FAM107AO95990 144 aa7.34□□□□□ -1.23
ZNF540-201ENST00000316433 VIMP08670 466 aaKnown RBP7.34□□□□□ -1.23
ZNF540-201ENST00000316433 HARSP12081 509 aaKnown RBP7.34□□□□□ -1.23
ZNF540-201ENST00000316433 PSMC4P43686 418 aa7.34□□□□□ -1.23
ZNF540-201ENST00000316433 USP14P54578 494 aa7.34□□□□□ -1.23
ZNF540-201ENST00000316433 PTGISQ16647 500 aa7.34□□□□□ -1.23
ZNF540-201ENST00000316433 LACTB2Q53H82 288 aaPredicted RBP7.34□□□□□ -1.23
ZNF540-201ENST00000316433 IFFO2Q5TF58 517 aa7.34□□□□□ -1.23
ZNF540-201ENST00000316433 EMC10Q5UCC4 262 aa7.34□□□□□ -1.23
ZNF540-201ENST00000316433 CDKAL1Q5VV42 579 aa7.34□□□□□ -1.23
ZNF540-201ENST00000316433 HOOK3Q86VS8 718 aa7.34□□□□□ -1.23
ZNF540-201ENST00000316433 CCDC155Q8N6L0 562 aa7.34□□□□□ -1.23
ZNF540-201ENST00000316433 FSIP1Q8NA03 581 aa7.34□□□□□ -1.23
ZNF540-201ENST00000316433 FBXW7Q969H0 707 aa7.34□□□□□ -1.23
ZNF540-201ENST00000316433 RPGRIP1Q96KN7 1286 aa7.34□□□□□ -1.23
ZNF540-201ENST00000316433 GDAP1L1Q96MZ0 367 aa7.34□□□□□ -1.23
ZNF540-201ENST00000316433 CNNM2Q9H8M5 875 aa7.34□□□□□ -1.23
ZNF540-201ENST00000316433 GPCPD1Q9NPB8 672 aa7.34□□□□□ -1.23
ZNF540-201ENST00000316433 TMCO1Q9UM00 188 aa7.34□□□□□ -1.23
ZNF540-201ENST00000316433 CTAGE9A4FU28 777 aa7.34□□□□□ -1.23
ZNF540-201ENST00000316433 JAK2O60674 1132 aa7.34□□□□□ -1.23
ZNF540-201ENST00000316433 EPB41P11171 864 aaKnown RBP7.34□□□□□ -1.23
ZNF540-201ENST00000316433 TOP1P11387 765 aaKnown RBP7.34□□□□□ -1.23
ZNF540-201ENST00000316433 ALOX15P16050 662 aaPredicted RBP7.34□□□□□ -1.23
ZNF540-201ENST00000316433 CDK17Q00537 523 aa7.34□□□□□ -1.23
ZNF540-201ENST00000316433 TFCP2Q12800 502 aa7.34□□□□□ -1.23
ZNF540-201ENST00000316433 CBX3Q13185 183 aa7.34□□□□□ -1.23
ZNF540-201ENST00000316433 HIBCHQ6NVY1 386 aaPredicted RBP7.34□□□□□ -1.23
ZNF540-201ENST00000316433 APTXQ7Z2E3 356 aaKnown RBP7.34□□□□□ -1.23
ZNF540-201ENST00000316433 NCOA7Q8NI08 942 aa7.34□□□□□ -1.23
ZNF540-201ENST00000316433 WHAMMQ8TF30 809 aa7.34□□□□□ -1.23
ZNF540-201ENST00000316433 DYDC1Q8WWB3 177 aa7.34□□□□□ -1.23
ZNF540-201ENST00000316433 NEUROD6Q96NK8 337 aa7.34□□□□□ -1.23
ZNF540-201ENST00000316433 OCEL1Q9H607 264 aa7.34□□□□□ -1.23
ZNF540-201ENST00000316433 MRPL44Q9H9J2 332 aaKnown RBP7.34□□□□□ -1.23
ZNF540-201ENST00000316433 PAIP2BQ9ULR5 123 aaKnown RBP7.34□□□□□ -1.23
ZNF540-201ENST00000316433 ABCB11O95342 1321 aa7.34□□□□□ -1.23
ZNF540-201ENST00000316433 DOT1LQ8TEK3 1739 aa7.34□□□□□ -1.23
ZNF540-201ENST00000316433 TCRBV5S4A2TA0A5A2 114 aa7.33□□□□□ -1.24
ZNF540-201ENST00000316433 PPP1R37O75864 691 aa7.33□□□□□ -1.24
ZNF540-201ENST00000316433 TFRCP02786 760 aaKnown RBP7.33□□□□□ -1.24
ZNF540-201ENST00000316433 IFNAR1P17181 557 aa7.33□□□□□ -1.24
ZNF540-201ENST00000316433 TATP17735 454 aaPredicted RBP7.33□□□□□ -1.24
ZNF540-201ENST00000316433 GNAT2P19087 354 aa7.33□□□□□ -1.24
ZNF540-201ENST00000316433 PTPREP23469 700 aa7.33□□□□□ -1.24
ZNF540-201ENST00000316433 POLE2P56282 527 aa7.33□□□□□ -1.24
ZNF540-201ENST00000316433 ANTXR2P58335 489 aa7.33□□□□□ -1.24
ZNF540-201ENST00000316433 IMMTQ16891 758 aaKnown RBP7.33□□□□□ -1.24
ZNF540-201ENST00000316433 PUS10Q3MIT2 529 aaKnown RBP7.33□□□□□ -1.24
ZNF540-201ENST00000316433 RBM26Q5T8P6 1007 aaKnown RBP7.33□□□□□ -1.24
ZNF540-201ENST00000316433 BICDL1Q6ZP65 573 aa7.33□□□□□ -1.24
ZNF540-201ENST00000316433 ZBTB8BQ8NAP8 495 aaPredicted RBP7.33□□□□□ -1.24
ZNF540-201ENST00000316433 IWS1Q96ST2 819 aa7.33□□□□□ -1.24
ZNF540-201ENST00000316433 NLRP2Q9NX02 1062 aa7.33□□□□□ -1.24
ZNF540-201ENST00000316433 PA2G4Q9UQ80 394 aaKnown RBP7.33□□□□□ -1.24
ZNF540-201ENST00000316433 TAF6LQ9Y6J9 622 aa7.33□□□□□ -1.24
ZNF540-201ENST00000316433 SBF2Q86WG5 1849 aa7.33□□□□□ -1.24
ZNF540-201ENST00000316433 SLX4Q8IY92 1834 aa7.33□□□□□ -1.24
ZNF540-201ENST00000316433 TARSL2A2RTX5 802 aaKnown RBP7.33□□□□□ -1.24
ZNF540-201ENST00000316433 APBB1O00213 710 aa7.33□□□□□ -1.24
ZNF540-201ENST00000316433 SLC3A2P08195 630 aaKnown RBP7.33□□□□□ -1.24
ZNF540-201ENST00000316433 ZFXP17010 805 aaPredicted RBP7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms