RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.6□□□□□ -0.55
UPF3B-201ENST00000276201 SH3RF1Q7Z6J0 888 aa11.6□□□□□ -0.55
UPF3B-201ENST00000276201 ZSCAN29Q8IWY8 852 aaPredicted RBP11.6□□□□□ -0.55
UPF3B-201ENST00000276201 TGFBRAP1Q8WUH2 860 aa11.6□□□□□ -0.55
UPF3B-201ENST00000276201 CLIC6Q96NY7 704 aa11.6□□□□□ -0.55
UPF3B-201ENST00000276201 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.6□□□□□ -0.55
UPF3B-201ENST00000276201 FAM107BQ9H098 131 aa11.6□□□□□ -0.55
UPF3B-201ENST00000276201 ABCB6Q9NP58 842 aa11.6□□□□□ -0.55
UPF3B-201ENST00000276201 GJB4Q9NTQ9 266 aa11.6□□□□□ -0.55
UPF3B-201ENST00000276201 VPS18Q9P253 973 aa11.6□□□□□ -0.55
UPF3B-201ENST00000276201 LCMT1Q9UIC8 334 aa11.6□□□□□ -0.55
UPF3B-201ENST00000276201 PCNTO95613 3336 aa11.6□□□□□ -0.55
UPF3B-201ENST00000276201 MAGEB6P1A0A0J9YX57 407 aa11.6□□□□□ -0.55
UPF3B-201ENST00000276201 TARSL2A2RTX5 802 aaKnown RBP11.6□□□□□ -0.55
UPF3B-201ENST00000276201 CTAGE15A4D2H0 777 aa11.6□□□□□ -0.55
UPF3B-201ENST00000276201 LRRC10BA6NIK2 292 aa11.6□□□□□ -0.55
UPF3B-201ENST00000276201 UNCXA6NJT0 531 aa11.6□□□□□ -0.55
UPF3B-201ENST00000276201 GPAA1O43292 621 aa11.6□□□□□ -0.55
UPF3B-201ENST00000276201 ZBTB43O43298 467 aa11.6□□□□□ -0.55
UPF3B-201ENST00000276201 CTAGE8P0CG41 777 aa11.6□□□□□ -0.55
UPF3B-201ENST00000276201 SLURP2P0DP57 97 aa11.6□□□□□ -0.55
UPF3B-201ENST00000276201 AMPD2Q01433 879 aa11.6□□□□□ -0.55
UPF3B-201ENST00000276201 VGLL4Q14135 290 aa11.6□□□□□ -0.55
UPF3B-201ENST00000276201 CASP8Q14790 479 aa11.6□□□□□ -0.55
UPF3B-201ENST00000276201 KARSQ15046 597 aaKnown RBP11.6□□□□□ -0.55
UPF3B-201ENST00000276201 FILIP1LQ4L180 1135 aa11.6□□□□□ -0.55
UPF3B-201ENST00000276201 CTAGE6Q86UF2 777 aa11.6□□□□□ -0.55
UPF3B-201ENST00000276201 MAPKAPK5Q8IW41 473 aa11.6□□□□□ -0.55
UPF3B-201ENST00000276201 CTAGE4Q8IX94 777 aa11.6□□□□□ -0.55
UPF3B-201ENST00000276201 ANKRD13AQ8IZ07 590 aa11.6□□□□□ -0.55
UPF3B-201ENST00000276201 FAM177A1Q8N128 213 aaPredicted RBP11.6□□□□□ -0.55
UPF3B-201ENST00000276201 IGDCC4Q8TDY8 1250 aa11.6□□□□□ -0.55
UPF3B-201ENST00000276201 RPGRIP1Q96KN7 1286 aa11.6□□□□□ -0.55
UPF3B-201ENST00000276201 FAM217BQ9NTX9 383 aaPredicted RBP11.6□□□□□ -0.55
UPF3B-201ENST00000276201 MMP1P03956 469 aa11.59□□□□□ -0.55
UPF3B-201ENST00000276201 SSRP1Q08945 709 aaKnown RBP11.59□□□□□ -0.55
UPF3B-201ENST00000276201 UBE3CQ15386 1083 aa11.59□□□□□ -0.55
UPF3B-201ENST00000276201 CERS3Q8IU89 383 aa11.59□□□□□ -0.55
UPF3B-201ENST00000276201 IGSF22Q8N9C0 903 aa11.59□□□□□ -0.55
UPF3B-201ENST00000276201 RUBCNQ92622 972 aa11.59□□□□□ -0.55
UPF3B-201ENST00000276201 WRNIP1Q96S55 665 aa11.59□□□□□ -0.55
UPF3B-201ENST00000276201 ZNF341Q9BYN7 854 aa11.59□□□□□ -0.55
UPF3B-201ENST00000276201 SIPA1L1O43166 1804 aa11.59□□□□□ -0.55
UPF3B-201ENST00000276201 SOWAHDA6NJG2 315 aa11.59□□□□□ -0.55
UPF3B-201ENST00000276201 PPFIA4O75335 1185 aa11.59□□□□□ -0.55
UPF3B-201ENST00000276201 HSPA1AP0DMV8 641 aaKnown RBP11.59□□□□□ -0.55
UPF3B-201ENST00000276201 HSPA1BP0DMV9 641 aaKnown RBP11.59□□□□□ -0.55
UPF3B-201ENST00000276201 TNNT3P45378 269 aaPredicted RBP11.59□□□□□ -0.55
UPF3B-201ENST00000276201 TOB1P50616 345 aaPredicted RBP11.59□□□□□ -0.55
UPF3B-201ENST00000276201 HAND2P61296 217 aa11.59□□□□□ -0.55
UPF3B-201ENST00000276201 SAFBQ15424 915 aaKnown RBP eCLIP11.59□□□□□ -0.55
UPF3B-201ENST00000276201 MAP9Q49MG5 647 aa11.59□□□□□ -0.55
UPF3B-201ENST00000276201 HSP90B2PQ58FF3 399 aa11.59□□□□□ -0.55
UPF3B-201ENST00000276201 SPRYD7Q5W111 196 aa11.59□□□□□ -0.55
UPF3B-201ENST00000276201 CYB5R4Q7L1T6 521 aa11.59□□□□□ -0.55
UPF3B-201ENST00000276201 PPM1EQ8WY54 764 aa11.59□□□□□ -0.55
UPF3B-201ENST00000276201 SLC10A4Q96EP9 437 aa11.59□□□□□ -0.55
UPF3B-201ENST00000276201 DESI2Q9BSY9 194 aa11.59□□□□□ -0.55
UPF3B-201ENST00000276201 ELP3Q9H9T3 547 aa11.59□□□□□ -0.55
UPF3B-201ENST00000276201 LY9Q9HBG7 655 aa11.59□□□□□ -0.55
UPF3B-201ENST00000276201 WBP1LQ9NX94 342 aa11.59□□□□□ -0.55
UPF3B-201ENST00000276201 LIMA1Q9UHB6 759 aaKnown RBP11.59□□□□□ -0.55
UPF3B-201ENST00000276201 SERTAD1Q9UHV2 236 aa11.59□□□□□ -0.55
UPF3B-201ENST00000276201 ZNF112Q9UJU3 913 aa11.59□□□□□ -0.55
UPF3B-201ENST00000276201 RANBP6O60518 1105 aaKnown RBP11.58□□□□□ -0.56
UPF3B-201ENST00000276201 BMP15O95972 392 aa11.58□□□□□ -0.56
UPF3B-201ENST00000276201 GJA5P36382 358 aa11.58□□□□□ -0.56
UPF3B-201ENST00000276201 MAP3K10Q02779 954 aa11.58□□□□□ -0.56
UPF3B-201ENST00000276201 SPAG1Q07617 926 aa11.58□□□□□ -0.56
UPF3B-201ENST00000276201 RBL2Q08999 1139 aa11.58□□□□□ -0.56
UPF3B-201ENST00000276201 MKRN3Q13064 507 aaKnown RBP11.58□□□□□ -0.56
UPF3B-201ENST00000276201 ICE2Q659A1 982 aa11.58□□□□□ -0.56
UPF3B-201ENST00000276201 C10orf67Q8IYJ2 551 aa11.58□□□□□ -0.56
UPF3B-201ENST00000276201 LCORLQ8N3X6 602 aa11.58□□□□□ -0.56
UPF3B-201ENST00000276201 ZKSCAN4Q969J2 545 aaPredicted RBP11.58□□□□□ -0.56
UPF3B-201ENST00000276201 WNK4Q96J92 1243 aa11.58□□□□□ -0.56
UPF3B-201ENST00000276201 AIFM3Q96NN9 605 aa11.58□□□□□ -0.56
UPF3B-201ENST00000276201 GSDMAQ96QA5 445 aa11.58□□□□□ -0.56
UPF3B-201ENST00000276201 SAMSN1Q9NSI8 373 aaKnown RBP11.58□□□□□ -0.56
UPF3B-201ENST00000276201 FAN1Q9Y2M0 1017 aa11.58□□□□□ -0.56
UPF3B-201ENST00000276201 SNCAIPQ9Y6H5 919 aa11.58□□□□□ -0.56
UPF3B-201ENST00000276201 DDX60LQ5H9U9 1706 aaKnown RBP11.58□□□□□ -0.56
UPF3B-201ENST00000276201 FOXN1O15353 648 aa11.57□□□□□ -0.56
UPF3B-201ENST00000276201 PPFIA3O75145 1194 aa11.57□□□□□ -0.56
UPF3B-201ENST00000276201 MBD4O95243 580 aa11.57□□□□□ -0.56
UPF3B-201ENST00000276201 PRR29P0C7W0 189 aa11.57□□□□□ -0.56
UPF3B-201ENST00000276201 INPP5BP32019 993 aa11.57□□□□□ -0.56
UPF3B-201ENST00000276201 ARHGAP25P42331 645 aa11.57□□□□□ -0.56
UPF3B-201ENST00000276201 MAP2K1Q02750 393 aaPredicted RBP11.57□□□□□ -0.56
UPF3B-201ENST00000276201 MTF1Q14872 753 aa11.57□□□□□ -0.56
UPF3B-201ENST00000276201 ZNF569Q5MCW4 686 aa11.57□□□□□ -0.56
UPF3B-201ENST00000276201 TRERF1Q96PN7 1200 aa11.57□□□□□ -0.56
UPF3B-201ENST00000276201 PUS7LQ9H0K6 701 aaKnown RBP11.57□□□□□ -0.56
UPF3B-201ENST00000276201 ARMT1Q9H993 441 aa11.57□□□□□ -0.56
UPF3B-201ENST00000276201 SAP30BPQ9UHR5 308 aaKnown RBP11.57□□□□□ -0.56
UPF3B-201ENST00000276201 FAM196BA6NMK8 535 aa11.57□□□□□ -0.56
UPF3B-201ENST00000276201 GOLGA8AA7E2F4 631 aa11.57□□□□□ -0.56
UPF3B-201ENST00000276201 PHF20L1A8MW92 1017 aa11.57□□□□□ -0.56
UPF3B-201ENST00000276201 TRIM66O15016 1216 aa11.57□□□□□ -0.56
UPF3B-201ENST00000276201 POLR2DO15514 142 aaKnown RBP11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms