RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 GOLGA1Q92805 767 aa18.61■□□□□ 0.57
VPS54-201ENST00000272322 LIMA1Q9UHB6 759 aaKnown RBP18.61■□□□□ 0.57
VPS54-201ENST00000272322 CERS5Q8N5B7 392 aa18.61■□□□□ 0.57
VPS54-201ENST00000272322 NEDD1Q8NHV4 660 aa18.61■□□□□ 0.57
VPS54-201ENST00000272322 CALML4Q96GE6 196 aa18.61■□□□□ 0.57
VPS54-201ENST00000272322 PNKPQ96T60 521 aa18.61■□□□□ 0.57
VPS54-201ENST00000272322 ZNF287Q9HBT7 754 aa18.61■□□□□ 0.57
VPS54-201ENST00000272322 ARFGAP3Q9NP61 516 aa18.61■□□□□ 0.57
VPS54-201ENST00000272322 H7C1D1 291 aa18.6■□□□□ 0.57
VPS54-201ENST00000272322 NDUFA10O95299 355 aa18.6■□□□□ 0.57
VPS54-201ENST00000272322 USH1GQ495M9 461 aa18.6■□□□□ 0.57
VPS54-201ENST00000272322 OR8K1Q8NGG5 319 aa18.6■□□□□ 0.57
VPS54-201ENST00000272322 RBM17Q96I25 401 aaKnown RBP18.6■□□□□ 0.57
VPS54-201ENST00000272322 GPR75-ASB3A0A0A6YYF3 556 aa18.6■□□□□ 0.57
VPS54-201ENST00000272322 NPHP3-ACAD11A0A0J9YXS1 232 aa18.6■□□□□ 0.57
VPS54-201ENST00000272322 TERF2Q15554 542 aa18.6■□□□□ 0.57
VPS54-201ENST00000272322 C16orf86Q6ZW13 317 aa18.6■□□□□ 0.57
VPS54-201ENST00000272322 TMTC1Q8IUR5 882 aa18.6■□□□□ 0.57
VPS54-201ENST00000272322 LACRTQ9GZZ8 138 aa18.6■□□□□ 0.57
VPS54-201ENST00000272322 NLRC4Q9NPP4 1024 aa18.6■□□□□ 0.57
VPS54-201ENST00000272322 MYMKA6NI61 221 aa18.59■□□□□ 0.57
VPS54-201ENST00000272322 ZNF185O15231 689 aa18.59■□□□□ 0.57
VPS54-201ENST00000272322 SPAG1Q07617 926 aa18.59■□□□□ 0.57
VPS54-201ENST00000272322 SPICE1Q8N0Z3 855 aa18.59■□□□□ 0.57
VPS54-201ENST00000272322 GJD4Q96KN9 370 aaPredicted RBP18.59■□□□□ 0.57
VPS54-201ENST00000272322 DUSP9Q99956 384 aaKnown RBP18.59■□□□□ 0.57
VPS54-201ENST00000272322 ZMYND12Q9H0C1 365 aa18.59■□□□□ 0.57
VPS54-201ENST00000272322 SCAF8Q9UPN6 1271 aaKnown RBP18.59■□□□□ 0.57
VPS54-201ENST00000272322 DOCK2Q92608 1830 aa18.59■□□□□ 0.57
VPS54-201ENST00000272322 M0R2N6 131 aa18.59■□□□□ 0.57
VPS54-201ENST00000272322 CC2D1AQ6P1N0 951 aaPredicted RBP18.59■□□□□ 0.57
VPS54-201ENST00000272322 NEK11Q8NG66 645 aa18.59■□□□□ 0.57
VPS54-201ENST00000272322 MMTAG2Q9BU76 263 aaKnown RBP18.59■□□□□ 0.57
VPS54-201ENST00000272322 REXO2Q9Y3B8 237 aaKnown RBP18.59■□□□□ 0.57
VPS54-201ENST00000272322 CXCR5P32302 372 aa18.59■□□□□ 0.57
VPS54-201ENST00000272322 NAP1L1P55209 391 aaKnown RBP18.59■□□□□ 0.57
VPS54-201ENST00000272322 PPARDQ03181 441 aa18.59■□□□□ 0.57
VPS54-201ENST00000272322 RCCD1A6NED2 376 aa18.58■□□□□ 0.57
VPS54-201ENST00000272322 EPHB6O15197 1021 aa18.58■□□□□ 0.57
VPS54-201ENST00000272322 GDF11O95390 407 aa18.58■□□□□ 0.57
VPS54-201ENST00000272322 STAT3P40763 770 aa18.58■□□□□ 0.57
VPS54-201ENST00000272322 PPP4CP60510 307 aa18.58■□□□□ 0.57
VPS54-201ENST00000272322 KRT25Q7Z3Z0 450 aa18.58■□□□□ 0.57
VPS54-201ENST00000272322 JADE2Q9NQC1 790 aa18.58■□□□□ 0.57
VPS54-201ENST00000272322 KBTBD4Q9NVX7 518 aa18.58■□□□□ 0.57
VPS54-201ENST00000272322 IRS2Q9Y4H2 1338 aa18.58■□□□□ 0.57
VPS54-201ENST00000272322 BCORQ6W2J9 1755 aa18.58■□□□□ 0.56
VPS54-201ENST00000272322 ATP2B4P23634 1241 aa18.58■□□□□ 0.56
VPS54-201ENST00000272322 TTI2Q6NXR4 508 aa18.58■□□□□ 0.56
VPS54-201ENST00000272322 GSPT2Q8IYD1 628 aaKnown RBP18.58■□□□□ 0.56
VPS54-201ENST00000272322 P2RX5Q93086 422 aa18.58■□□□□ 0.56
VPS54-201ENST00000272322 MTMR4Q9NYA4 1195 aa18.58■□□□□ 0.56
VPS54-201ENST00000272322 SMARCAL1Q9NZC9 954 aa18.58■□□□□ 0.56
VPS54-201ENST00000272322 CDC23Q9UJX2 597 aa18.58■□□□□ 0.56
VPS54-201ENST00000272322 OAS2P29728 719 aaKnown RBP18.58■□□□□ 0.56
VPS54-201ENST00000272322 SV2BQ7L1I2 683 aa18.58■□□□□ 0.56
VPS54-201ENST00000272322 C2CD5Q86YS7 1000 aa18.58■□□□□ 0.56
VPS54-201ENST00000272322 ADGRF4Q8IZF3 695 aa18.58■□□□□ 0.56
VPS54-201ENST00000272322 KIAA0895Q8NCT3 520 aa18.58■□□□□ 0.56
VPS54-201ENST00000272322 CCDC47Q96A33 483 aaKnown RBP18.58■□□□□ 0.56
VPS54-201ENST00000272322 NAPGQ99747 312 aaPredicted RBP18.58■□□□□ 0.56
VPS54-201ENST00000272322 MYH8P13535 1937 aa18.58■□□□□ 0.56
VPS54-201ENST00000272322 MEIS1O00470 390 aa18.57■□□□□ 0.56
VPS54-201ENST00000272322 TBC1D8O95759 1140 aa18.57■□□□□ 0.56
VPS54-201ENST00000272322 ARHGAP25P42331 645 aa18.57■□□□□ 0.56
VPS54-201ENST00000272322 ADCY7P51828 1080 aa18.57■□□□□ 0.56
VPS54-201ENST00000272322 DNAAF5Q86Y56 855 aa18.57■□□□□ 0.56
VPS54-201ENST00000272322 GIMAP8Q8ND71 665 aaPredicted RBP18.57■□□□□ 0.56
VPS54-201ENST00000272322 ATP1A1P05023 1023 aaKnown RBP18.57■□□□□ 0.56
VPS54-201ENST00000272322 FAM193AP78312 1265 aa18.57■□□□□ 0.56
VPS54-201ENST00000272322 ECM1Q16610 540 aa18.57■□□□□ 0.56
VPS54-201ENST00000272322 WDR59Q6PJI9 974 aa18.57■□□□□ 0.56
VPS54-201ENST00000272322 CAGE1Q8TC20 777 aa18.57■□□□□ 0.56
VPS54-201ENST00000272322 SEMA6BQ9H3T3 888 aa18.57■□□□□ 0.56
VPS54-201ENST00000272322 TIAM2Q8IVF5 1701 aa18.57■□□□□ 0.56
VPS54-201ENST00000272322 LGALS16A8MUM7 142 aa18.57■□□□□ 0.56
VPS54-201ENST00000272322 IPO7O95373 1038 aaKnown RBP18.57■□□□□ 0.56
VPS54-201ENST00000272322 RNASE9P60153 205 aaKnown RBP18.57■□□□□ 0.56
VPS54-201ENST00000272322 LONRF2Q1L5Z9 754 aa18.57■□□□□ 0.56
VPS54-201ENST00000272322 TMED8Q6PL24 325 aaPredicted RBP18.57■□□□□ 0.56
VPS54-201ENST00000272322 SRGAP1Q7Z6B7 1085 aa18.57■□□□□ 0.56
VPS54-201ENST00000272322 GTPBP4Q9BZE4 634 aaKnown RBP18.57■□□□□ 0.56
VPS54-201ENST00000272322 DEF6Q9H4E7 631 aa18.57■□□□□ 0.56
VPS54-201ENST00000272322 SERPINB13Q9UIV8 391 aa18.57■□□□□ 0.56
VPS54-201ENST00000272322 PHLPP1O60346 1717 aa18.56■□□□□ 0.56
VPS54-201ENST00000272322 E9PMD0 336 aa18.56■□□□□ 0.56
VPS54-201ENST00000272322 N4BP1O75113 896 aaKnown RBP18.56■□□□□ 0.56
VPS54-201ENST00000272322 TRIM34Q9BYJ4 488 aa18.56■□□□□ 0.56
VPS54-201ENST00000272322 SH3GLB2Q9NR46 395 aa18.56■□□□□ 0.56
VPS54-201ENST00000272322 AFF2P51816 1311 aa18.56■□□□□ 0.56
VPS54-201ENST00000272322 SMC1AQ14683 1233 aaKnown RBP18.56■□□□□ 0.56
VPS54-201ENST00000272322 GPR161Q8N6U8 529 aaKnown RBP18.56■□□□□ 0.56
VPS54-201ENST00000272322 ABCB6Q9NP58 842 aa18.56■□□□□ 0.56
VPS54-201ENST00000272322 ZNHIT6Q9NWK9 470 aaKnown RBP18.56■□□□□ 0.56
VPS54-201ENST00000272322 CTAGE15A4D2H0 777 aa18.55■□□□□ 0.56
VPS54-201ENST00000272322 PPEF1O14829 653 aaPredicted RBP18.55■□□□□ 0.56
VPS54-201ENST00000272322 PPP1R11O60927 126 aaPredicted RBP18.55■□□□□ 0.56
VPS54-201ENST00000272322 CTAGE8P0CG41 777 aa18.55■□□□□ 0.56
VPS54-201ENST00000272322 GRB10Q13322 594 aa18.55■□□□□ 0.56
VPS54-201ENST00000272322 TMC4Q7Z404 712 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms