RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 CSRNP2Q9H175 543 aa15.13■□□□□ 0.01
LDLR-201ENST00000252444 PALM3A6NDB9 673 aaPredicted RBP15.13■□□□□ 0.01
LDLR-201ENST00000252444 GDF11O95390 407 aa15.13■□□□□ 0.01
LDLR-201ENST00000252444 RPLP2P05387 115 aaKnown RBP15.13■□□□□ 0.01
LDLR-201ENST00000252444 RNF207Q6ZRF8 634 aa15.13■□□□□ 0.01
LDLR-201ENST00000252444 NELFBQ8WX92 580 aa15.13■□□□□ 0.01
LDLR-201ENST00000252444 CCDC94Q9BW85 323 aaPredicted RBP15.13■□□□□ 0.01
LDLR-201ENST00000252444 ACAD9Q9H845 621 aa15.13■□□□□ 0.01
LDLR-201ENST00000252444 PFASO15067 1338 aa15.13■□□□□ 0.01
LDLR-201ENST00000252444 NPM3O75607 178 aaKnown RBP15.13■□□□□ 0.01
LDLR-201ENST00000252444 RESTQ13127 1097 aa15.13■□□□□ 0.01
LDLR-201ENST00000252444 MICALL2Q8IY33 904 aa15.13■□□□□ 0.01
LDLR-201ENST00000252444 FBXL16Q8N461 479 aa15.13■□□□□ 0.01
LDLR-201ENST00000252444 UBE2Q2Q8WVN8 375 aa15.13■□□□□ 0.01
LDLR-201ENST00000252444 MAIP1Q8WWC4 291 aa15.13■□□□□ 0.01
LDLR-201ENST00000252444 LARP4BQ92615 738 aaKnown RBP15.13■□□□□ 0.01
LDLR-201ENST00000252444 TRIM6Q9C030 488 aaPredicted RBP15.13■□□□□ 0.01
LDLR-201ENST00000252444 TDRD3Q9H7E2 651 aaKnown RBP15.13■□□□□ 0.01
LDLR-201ENST00000252444 EEF1GP26641 437 aaKnown RBP15.13■□□□□ 0.01
LDLR-201ENST00000252444 CDC25BP30305 580 aa15.13■□□□□ 0.01
LDLR-201ENST00000252444 MAP3K9P80192 1104 aa15.13■□□□□ 0.01
LDLR-201ENST00000252444 R3HDM1Q15032 1099 aaKnown RBP15.13■□□□□ 0.01
LDLR-201ENST00000252444 STXBP2Q15833 593 aa15.13■□□□□ 0.01
LDLR-201ENST00000252444 USP28Q96RU2 1077 aa15.13■□□□□ 0.01
LDLR-201ENST00000252444 ADARB2Q9NS39 739 aaKnown RBP15.13■□□□□ 0.01
LDLR-201ENST00000252444 PANK4Q9NVE7 773 aa15.13■□□□□ 0.01
LDLR-201ENST00000252444 MYZAPP0CAP1 466 aa15.13■□□□□ 0.01
LDLR-201ENST00000252444 PTGDRQ13258 359 aa15.13■□□□□ 0.01
LDLR-201ENST00000252444 ENAHQ8N8S7 591 aaPredicted RBP15.13■□□□□ 0.01
LDLR-201ENST00000252444 GOLGA1Q92805 767 aa15.13■□□□□ 0.01
LDLR-201ENST00000252444 WRNIP1Q96S55 665 aa15.13■□□□□ 0.01
LDLR-201ENST00000252444 CNOT7Q9UIV1 285 aaKnown RBP15.13■□□□□ 0.01
LDLR-201ENST00000252444 ZBTB21Q9ULJ3 1066 aa15.13■□□□□ 0.01
LDLR-201ENST00000252444 BTBD18B2RXH4 712 aa15.12■□□□□ 0.01
LDLR-201ENST00000252444 SLFN14P0C7P3 912 aa15.12■□□□□ 0.01
LDLR-201ENST00000252444 YARSP54577 528 aaKnown RBP15.12■□□□□ 0.01
LDLR-201ENST00000252444 PDE4CQ08493 712 aa15.12■□□□□ 0.01
LDLR-201ENST00000252444 TBC1D8BQ0IIM8 1120 aa15.12■□□□□ 0.01
LDLR-201ENST00000252444 ASIC2Q16515 512 aa15.12■□□□□ 0.01
LDLR-201ENST00000252444 TPH2Q8IWU9 490 aa15.12■□□□□ 0.01
LDLR-201ENST00000252444 ACCSQ96QU6 501 aa15.12■□□□□ 0.01
LDLR-201ENST00000252444 PARK7Q99497 189 aaKnown RBP15.12■□□□□ 0.01
LDLR-201ENST00000252444 SEL1LQ9UBV2 794 aa15.12■□□□□ 0.01
LDLR-201ENST00000252444 BCL9LQ86UU0 1499 aa15.12■□□□□ 0.01
LDLR-201ENST00000252444 GCNT3O95395 438 aa15.12■□□□□ 0.01
LDLR-201ENST00000252444 CWC15Q9P013 229 aaKnown RBP15.12■□□□□ 0.01
LDLR-201ENST00000252444 MRVI1Q9Y6F6 885 aa15.12■□□□□ 0.01
LDLR-201ENST00000252444 TNNC2P02585 160 aa15.12■□□□□ 0.01
LDLR-201ENST00000252444 CTNNA2P26232 953 aa15.12■□□□□ 0.01
LDLR-201ENST00000252444 XKR9Q5GH70 373 aa15.12■□□□□ 0.01
LDLR-201ENST00000252444 SYCE1Q8N0S2 351 aa15.12■□□□□ 0.01
LDLR-201ENST00000252444 COA7Q96BR5 231 aa15.12■□□□□ 0.01
LDLR-201ENST00000252444 HOMER2Q9NSB8 354 aa15.12■□□□□ 0.01
LDLR-201ENST00000252444 KIAA0391O15091 583 aaKnown RBP15.12■□□□□ 0.01
LDLR-201ENST00000252444 LPXNO60711 386 aa15.12■□□□□ 0.01
LDLR-201ENST00000252444 BPIFB4P59827 614 aa15.12■□□□□ 0.01
LDLR-201ENST00000252444 SNAPC2Q13487 334 aa15.12■□□□□ 0.01
LDLR-201ENST00000252444 SEPT7Q16181 437 aaKnown RBP15.12■□□□□ 0.01
LDLR-201ENST00000252444 BBXQ8WY36 941 aaPredicted RBP15.12■□□□□ 0.01
LDLR-201ENST00000252444 INO80BQ9C086 356 aaPredicted RBP15.12■□□□□ 0.01
LDLR-201ENST00000252444 MYOZ2Q9NPC6 264 aa15.12■□□□□ 0.01
LDLR-201ENST00000252444 TRPC6Q9Y210 931 aa15.12■□□□□ 0.01
LDLR-201ENST00000252444 MAFGO15525 162 aa15.11■□□□□ 0.01
LDLR-201ENST00000252444 EXOC3O60645 756 aa15.11■□□□□ 0.01
LDLR-201ENST00000252444 MYCNP04198 464 aaPredicted RBP15.11■□□□□ 0.01
LDLR-201ENST00000252444 RPN1P04843 607 aaKnown RBP15.11■□□□□ 0.01
LDLR-201ENST00000252444 SREBF2Q12772 1141 aa15.11■□□□□ 0.01
LDLR-201ENST00000252444 TOB2Q14106 344 aaPredicted RBP15.11■□□□□ 0.01
LDLR-201ENST00000252444 SLC9C1Q4G0N8 1177 aa15.11■□□□□ 0.01
LDLR-201ENST00000252444 CHST13Q8NET6 341 aa15.11■□□□□ 0.01
LDLR-201ENST00000252444 SLC7A3Q8WY07 619 aa15.11■□□□□ 0.01
LDLR-201ENST00000252444 DYNLL2Q96FJ2 89 aa15.11■□□□□ 0.01
LDLR-201ENST00000252444 KIAA1586Q9HCI6 787 aa15.11■□□□□ 0.01
LDLR-201ENST00000252444 BZW2Q9Y6E2 419 aaKnown RBP15.11■□□□□ 0.01
LDLR-201ENST00000252444 USP54Q70EL1 1684 aa15.11■□□□□ 0.01
LDLR-201ENST00000252444 FAM26FQ5R3K3 315 aa15.11■□□□□ 0.01
LDLR-201ENST00000252444 LINC00301Q8NCQ3 95 aa15.11■□□□□ 0.01
LDLR-201ENST00000252444 RDM1Q8NG50 284 aa15.11■□□□□ 0.01
LDLR-201ENST00000252444 TBCKQ8TEA7 893 aa15.11■□□□□ 0.01
LDLR-201ENST00000252444 DPF2Q92785 391 aa15.11■□□□□ 0.01
LDLR-201ENST00000252444 GPKOWQ92917 476 aaPredicted RBP eCLIP15.11■□□□□ 0.011e-8■■□□□ 12.3
LDLR-201ENST00000252444 SERTAD1Q9UHV2 236 aa15.11■□□□□ 0.01
LDLR-201ENST00000252444 PCDHA7Q9UN72 937 aa15.11■□□□□ 0.01
LDLR-201ENST00000252444 SPATA1Q5VX52 437 aa15.11■□□□□ 0.01
LDLR-201ENST00000252444 SLFN12LQ6IEE8 588 aa15.11■□□□□ 0.01
LDLR-201ENST00000252444 MCPH1Q8NEM0 835 aa15.11■□□□□ 0.01
LDLR-201ENST00000252444 PUF60Q9UHX1 559 aaKnown RBP15.11■□□□□ 0.01
LDLR-201ENST00000252444 POLGP54098 1239 aaPredicted RBP15.11■□□□□ 0.01
LDLR-201ENST00000252444 PRKG1Q13976 671 aa15.11■□□□□ 0.01
LDLR-201ENST00000252444 MTMR4Q9NYA4 1195 aa15.11■□□□□ 0.01
LDLR-201ENST00000252444 CHRNA5P30532 468 aa15.1■□□□□ 0.01
LDLR-201ENST00000252444 NOP2P46087 812 aaKnown RBP15.1■□□□□ 0.01
LDLR-201ENST00000252444 CDC42EP5Q6NZY7 148 aa15.1■□□□□ 0.01
LDLR-201ENST00000252444 FAM178BQ8IXR5 827 aa15.1■□□□□ 0.01
LDLR-201ENST00000252444 ALS2Q96Q42 1657 aa15.1■□□□□ 0.01
LDLR-201ENST00000252444 MUTP22033 750 aa15.1■□□□□ 0.01
LDLR-201ENST00000252444 CLEC17AQ6ZS10 378 aa15.1■□□□□ 0.01
LDLR-201ENST00000252444 KCND2Q9NZV8 630 aa15.1■□□□□ 0.01
LDLR-201ENST00000252444 EEF2P13639 858 aaKnown RBP15.1■□□□□ 0.01
LDLR-201ENST00000252444 KCTD1Q719H9 257 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms