RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 CLRN2A0PK11 232 aa18.48■□□□□ 0.55
LDB3-208ENST00000623007 USP17L10C9JJH3 530 aa18.48■□□□□ 0.55
LDB3-208ENST00000623007 WNT7AO00755 349 aa18.48■□□□□ 0.55
LDB3-208ENST00000623007 AP5Z1O43299 807 aa18.48■□□□□ 0.55
LDB3-208ENST00000623007 NRDCO43847 1150 aa18.48■□□□□ 0.55
LDB3-208ENST00000623007 GDF11O95390 407 aa18.48■□□□□ 0.55
LDB3-208ENST00000623007 FXR2P51116 673 aaKnown RBP eCLIP18.48■□□□□ 0.55
LDB3-208ENST00000623007 DPYDQ12882 1025 aa18.48■□□□□ 0.55
LDB3-208ENST00000623007 CDC37Q16543 378 aaPredicted RBP18.48■□□□□ 0.55
LDB3-208ENST00000623007 QRICH1Q2TAL8 776 aa18.48■□□□□ 0.55
LDB3-208ENST00000623007 SYDE2Q5VT97 1194 aa18.48■□□□□ 0.55
LDB3-208ENST00000623007 RRAGBQ5VZM2 374 aa18.48■□□□□ 0.55
LDB3-208ENST00000623007 FAM160B2Q86V87 743 aa18.48■□□□□ 0.55
LDB3-208ENST00000623007 CLEC10AQ8IUN9 316 aa18.48■□□□□ 0.55
LDB3-208ENST00000623007 SIAH1Q8IUQ4 282 aa18.48■□□□□ 0.55
LDB3-208ENST00000623007 ERCC4Q92889 916 aaPredicted RBP18.48■□□□□ 0.55
LDB3-208ENST00000623007 COA7Q96BR5 231 aa18.48■□□□□ 0.55
LDB3-208ENST00000623007 BIN2Q9UBW5 565 aaPredicted RBP18.48■□□□□ 0.55
LDB3-208ENST00000623007 PNMA2Q9UL42 364 aa18.48■□□□□ 0.55
LDB3-208ENST00000623007 ZBTB21Q9ULJ3 1066 aa18.48■□□□□ 0.55
LDB3-208ENST00000623007 ZBTB12Q9Y330 459 aaPredicted RBP18.48■□□□□ 0.55
LDB3-208ENST00000623007 PCDHA1Q9Y5I3 950 aa18.48■□□□□ 0.55
LDB3-208ENST00000623007 WNT10BO00744 389 aa18.47■□□□□ 0.55
LDB3-208ENST00000623007 STAT2P52630 851 aa18.47■□□□□ 0.55
LDB3-208ENST00000623007 JAKMIP3Q5VZ66 844 aa18.47■□□□□ 0.55
LDB3-208ENST00000623007 TTBK2Q6IQ55 1244 aa18.47■□□□□ 0.55
LDB3-208ENST00000623007 PDXDC2PQ6P474 469 aa18.47■□□□□ 0.55
LDB3-208ENST00000623007 USP49Q70CQ1 688 aa18.47■□□□□ 0.55
LDB3-208ENST00000623007 RASGRP2Q7LDG7 609 aa18.47■□□□□ 0.55
LDB3-208ENST00000623007 CALML4Q96GE6 196 aa18.47■□□□□ 0.55
LDB3-208ENST00000623007 SGIP1Q9BQI5 828 aa18.47■□□□□ 0.55
LDB3-208ENST00000623007 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.47■□□□□ 0.55
LDB3-208ENST00000623007 FAM196BA6NMK8 535 aa18.47■□□□□ 0.55
LDB3-208ENST00000623007 NCAPHQ15003 741 aa18.47■□□□□ 0.55
LDB3-208ENST00000623007 CALCRLQ16602 461 aa18.47■□□□□ 0.55
LDB3-208ENST00000623007 FBXO11Q86XK2 927 aa18.47■□□□□ 0.55
LDB3-208ENST00000623007 NFKBIEO00221 500 aa18.46■□□□□ 0.55
LDB3-208ENST00000623007 CAP2P40123 477 aa18.46■□□□□ 0.55
LDB3-208ENST00000623007 IKQ13123 557 aaPredicted RBP18.46■□□□□ 0.55
LDB3-208ENST00000623007 KCNB1Q14721 858 aa18.46■□□□□ 0.55
LDB3-208ENST00000623007 IL17AQ16552 155 aa18.46■□□□□ 0.55
LDB3-208ENST00000623007 IGSF22Q8N9C0 903 aa18.46■□□□□ 0.55
LDB3-208ENST00000623007 STK17AQ9UEE5 414 aa18.46■□□□□ 0.55
LDB3-208ENST00000623007 FZD9O00144 591 aa18.45■□□□□ 0.54
LDB3-208ENST00000623007 RAD21O60216 631 aa18.45■□□□□ 0.54
LDB3-208ENST00000623007 SLC16A2P36021 539 aa18.45■□□□□ 0.54
LDB3-208ENST00000623007 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.45■□□□□ 0.54
LDB3-208ENST00000623007 MTMR9Q96QG7 549 aa18.45■□□□□ 0.54
LDB3-208ENST00000623007 BCS1LQ9Y276 419 aa18.45■□□□□ 0.54
LDB3-208ENST00000623007 A0A087X0B3 334 aa18.44■□□□□ 0.54
LDB3-208ENST00000623007 TMEM232C9JQI7 657 aa18.44■□□□□ 0.54
LDB3-208ENST00000623007 AFMP43652 599 aa18.44■□□□□ 0.54
LDB3-208ENST00000623007 CABP7Q86V35 215 aa18.44■□□□□ 0.54
LDB3-208ENST00000623007 SLFN12Q8IYM2 578 aa18.44■□□□□ 0.54
LDB3-208ENST00000623007 TMEM60Q9H2L4 133 aa18.44■□□□□ 0.54
LDB3-208ENST00000623007 VCPKMTQ9H867 229 aa18.44■□□□□ 0.54
LDB3-208ENST00000623007 EHMT1Q9H9B1 1298 aa18.44■□□□□ 0.54
LDB3-208ENST00000623007 CYP3A7-CYP3A51PA0A087WV96 503 aa18.44■□□□□ 0.54
LDB3-208ENST00000623007 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.44■□□□□ 0.54
LDB3-208ENST00000623007 PIK3CDO00329 1044 aa18.44■□□□□ 0.54
LDB3-208ENST00000623007 TBX3O15119 743 aa18.44■□□□□ 0.54
LDB3-208ENST00000623007 PPP1R11O60927 126 aaPredicted RBP18.44■□□□□ 0.54
LDB3-208ENST00000623007 PRR29P0C7W0 189 aa18.44■□□□□ 0.54
LDB3-208ENST00000623007 CYP3A7P24462 503 aa18.44■□□□□ 0.54
LDB3-208ENST00000623007 STIM1Q13586 685 aa18.44■□□□□ 0.54
LDB3-208ENST00000623007 KCTD17Q8N5Z5 321 aa18.44■□□□□ 0.54
LDB3-208ENST00000623007 LPAR1Q92633 364 aa18.44■□□□□ 0.54
LDB3-208ENST00000623007 CTAGE1Q96RT6 745 aa18.44■□□□□ 0.54
LDB3-208ENST00000623007 KBTBD4Q9NVX7 518 aa18.44■□□□□ 0.54
LDB3-208ENST00000623007 FEM1BQ9UK73 627 aa18.44■□□□□ 0.54
LDB3-208ENST00000623007 ADAMTS3O15072 1205 aa18.43■□□□□ 0.54
LDB3-208ENST00000623007 FOXN1O15353 648 aa18.43■□□□□ 0.54
LDB3-208ENST00000623007 SERPINC1P01008 464 aa18.43■□□□□ 0.54
LDB3-208ENST00000623007 R3HDM1Q15032 1099 aaKnown RBP18.43■□□□□ 0.54
LDB3-208ENST00000623007 ZNF658Q5TYW1 1059 aaPredicted RBP18.43■□□□□ 0.54
LDB3-208ENST00000623007 DCAF15Q66K64 600 aa18.43■□□□□ 0.54
LDB3-208ENST00000623007 SPC24Q8NBT2 197 aa18.43■□□□□ 0.54
LDB3-208ENST00000623007 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.43■□□□□ 0.54
LDB3-208ENST00000623007 PPP1R1BQ9UD71 204 aaPredicted RBP18.43■□□□□ 0.54
LDB3-208ENST00000623007 DDX25Q9UHL0 483 aaKnown RBP18.43■□□□□ 0.54
LDB3-208ENST00000623007 KDM3AQ9Y4C1 1321 aa18.42■□□□□ 0.54
LDB3-208ENST00000623007 SPDYE3A6NKU9 549 aa18.42■□□□□ 0.54
LDB3-208ENST00000623007 FANCCQ00597 558 aa18.42■□□□□ 0.54
LDB3-208ENST00000623007 KRT79Q5XKE5 535 aa18.42■□□□□ 0.54
LDB3-208ENST00000623007 CCDC186Q7Z3E2 898 aa18.42■□□□□ 0.54
LDB3-208ENST00000623007 SAMD3Q8N6K7 520 aa18.42■□□□□ 0.54
LDB3-208ENST00000623007 CCDC150Q8NCX0 1101 aa18.42■□□□□ 0.54
LDB3-208ENST00000623007 LRWD1Q9UFC0 647 aa18.42■□□□□ 0.54
LDB3-208ENST00000623007 PGAP2Q9UHJ9 254 aa18.42■□□□□ 0.54
LDB3-208ENST00000623007 RABGAP1Q9Y3P9 1069 aa18.42■□□□□ 0.54
LDB3-208ENST00000623007 MARCH6O60337 910 aa18.41■□□□□ 0.54
LDB3-208ENST00000623007 CTNND1O60716 968 aaKnown RBP18.41■□□□□ 0.54
LDB3-208ENST00000623007 RPN1P04843 607 aaKnown RBP18.41■□□□□ 0.54
LDB3-208ENST00000623007 SPAG1Q07617 926 aa18.41■□□□□ 0.54
LDB3-208ENST00000623007 SPATA1Q5VX52 437 aa18.41■□□□□ 0.54
LDB3-208ENST00000623007 APOBEC3FQ8IUX4 373 aaKnown RBP18.41■□□□□ 0.54
LDB3-208ENST00000623007 CDK5RAP3Q96JB5 506 aa18.41■□□□□ 0.54
LDB3-208ENST00000623007 TMEM39BQ9GZU3 492 aa18.41■□□□□ 0.54
LDB3-208ENST00000623007 NT5C3AQ9H0P0 336 aa18.41■□□□□ 0.54
LDB3-208ENST00000623007 TMEM260Q9NX78 707 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms