RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 PLIN2Q99541 437 aa11.35□□□□□ -0.59
VPS53-220ENST00000576149 UBA5Q9GZZ9 404 aa11.35□□□□□ -0.59
VPS53-220ENST00000576149 VPS16Q9H269 839 aa11.35□□□□□ -0.59
VPS53-220ENST00000576149 FOCADQ5VW36 1801 aa11.34□□□□□ -0.59
VPS53-220ENST00000576149 IGKV6D-41A0A0C4DH26 115 aa11.34□□□□□ -0.59
VPS53-220ENST00000576149 SNHG28P0DPA3 235 aa11.34□□□□□ -0.59
VPS53-220ENST00000576149 CASQ1P31415 396 aa11.34□□□□□ -0.59
VPS53-220ENST00000576149 PICALMQ13492 652 aa11.34□□□□□ -0.59
VPS53-220ENST00000576149 TXNRD1Q16881 649 aa11.34□□□□□ -0.59
VPS53-220ENST00000576149 FBXO38Q6PIJ6 1188 aa11.34□□□□□ -0.59
VPS53-220ENST00000576149 IRF2BP1Q8IU81 584 aa11.34□□□□□ -0.59
VPS53-220ENST00000576149 REXO1Q8N1G1 1221 aaKnown RBP11.34□□□□□ -0.59
VPS53-220ENST00000576149 CERS5Q8N5B7 392 aa11.34□□□□□ -0.59
VPS53-220ENST00000576149 TBCKQ8TEA7 893 aa11.34□□□□□ -0.59
VPS53-220ENST00000576149 WDR24Q96S15 920 aa11.34□□□□□ -0.59
VPS53-220ENST00000576149 MRPL44Q9H9J2 332 aaKnown RBP11.34□□□□□ -0.59
VPS53-220ENST00000576149 TAB2Q9NYJ8 693 aa11.34□□□□□ -0.59
VPS53-220ENST00000576149 OGFRQ9NZT2 677 aa11.34□□□□□ -0.59
VPS53-220ENST00000576149 ADGRG1Q9Y653 693 aa11.34□□□□□ -0.59
VPS53-220ENST00000576149 TPM1P09493 284 aa11.34□□□□□ -0.59
VPS53-220ENST00000576149 AKR1B1P15121 316 aa11.34□□□□□ -0.59
VPS53-220ENST00000576149 PLCG1P19174 1290 aa11.34□□□□□ -0.59
VPS53-220ENST00000576149 ASPRV1Q53RT3 343 aa11.34□□□□□ -0.59
VPS53-220ENST00000576149 KIFC2Q96AC6 838 aa11.34□□□□□ -0.59
VPS53-220ENST00000576149 DDX41Q9UJV9 622 aaKnown RBP11.34□□□□□ -0.59
VPS53-220ENST00000576149 TRIM49BA6NDI0 452 aa11.33□□□□□ -0.6
VPS53-220ENST00000576149 TRIM37O94972 964 aa11.33□□□□□ -0.6
VPS53-220ENST00000576149 PMS1P54277 932 aaKnown RBP11.33□□□□□ -0.6
VPS53-220ENST00000576149 MAP3K9P80192 1104 aa11.33□□□□□ -0.6
VPS53-220ENST00000576149 STIM1Q13586 685 aa11.33□□□□□ -0.6
VPS53-220ENST00000576149 TRIM14Q14142 442 aa11.33□□□□□ -0.6
VPS53-220ENST00000576149 SMAP1Q8IYB5 467 aaPredicted RBP11.33□□□□□ -0.6
VPS53-220ENST00000576149 PROM2Q8N271 834 aa11.33□□□□□ -0.6
VPS53-220ENST00000576149 ZC3H12CQ9C0D7 883 aaKnown RBP11.33□□□□□ -0.6
VPS53-220ENST00000576149 DDX4Q9NQI0 724 aaKnown RBP11.33□□□□□ -0.6
VPS53-220ENST00000576149 BIN2Q9UBW5 565 aaPredicted RBP11.33□□□□□ -0.6
VPS53-220ENST00000576149 FRMPD2Q68DX3 1309 aaPredicted RBP11.33□□□□□ -0.6
VPS53-220ENST00000576149 F8W031 263 aaPredicted RBP11.33□□□□□ -0.6
VPS53-220ENST00000576149 H2AFXP16104 143 aaPredicted RBP11.33□□□□□ -0.6
VPS53-220ENST00000576149 TECP42680 631 aa11.33□□□□□ -0.6
VPS53-220ENST00000576149 GRIPAP1Q4V328 841 aa11.33□□□□□ -0.6
VPS53-220ENST00000576149 JAKMIP3Q5VZ66 844 aa11.33□□□□□ -0.6
VPS53-220ENST00000576149 DPP8Q6V1X1 898 aaPredicted RBP11.33□□□□□ -0.6
VPS53-220ENST00000576149 TMTC1Q8IUR5 882 aa11.33□□□□□ -0.6
VPS53-220ENST00000576149 LRRC47Q8N1G4 583 aaKnown RBP11.33□□□□□ -0.6
VPS53-220ENST00000576149 C7orf25Q9BPX7 421 aa11.33□□□□□ -0.6
VPS53-220ENST00000576149 TRIM9Q9C026 710 aa11.33□□□□□ -0.6
VPS53-220ENST00000576149 THAP9Q9H5L6 903 aa11.33□□□□□ -0.6
VPS53-220ENST00000576149 QTRT2Q9H974 415 aaKnown RBP11.33□□□□□ -0.6
VPS53-220ENST00000576149 ABHD10Q9NUJ1 306 aa11.33□□□□□ -0.6
VPS53-220ENST00000576149 TTF2Q9UNY4 1162 aaKnown RBP11.33□□□□□ -0.6
VPS53-220ENST00000576149 MYO3BQ8WXR4 1341 aa11.32□□□□□ -0.6
VPS53-220ENST00000576149 PSMA7O14818 248 aa11.32□□□□□ -0.6
VPS53-220ENST00000576149 TADA3O75528 432 aa11.32□□□□□ -0.6
VPS53-220ENST00000576149 SRGNP10124 158 aa11.32□□□□□ -0.6
VPS53-220ENST00000576149 EEF1GP26641 437 aaKnown RBP11.32□□□□□ -0.6
VPS53-220ENST00000576149 CREBRFQ8IUR6 639 aa11.32□□□□□ -0.6
VPS53-220ENST00000576149 MNS1Q8NEH6 495 aa11.32□□□□□ -0.6
VPS53-220ENST00000576149 DHTKD1Q96HY7 919 aaPredicted RBP11.32□□□□□ -0.6
VPS53-220ENST00000576149 MMTAG2Q9BU76 263 aaKnown RBP11.32□□□□□ -0.6
VPS53-220ENST00000576149 CARD6Q9BX69 1037 aa11.32□□□□□ -0.6
VPS53-220ENST00000576149 TMEM260Q9NX78 707 aa11.32□□□□□ -0.6
VPS53-220ENST00000576149 SWAP70Q9UH65 585 aa11.32□□□□□ -0.6
VPS53-220ENST00000576149 SERPINB13Q9UIV8 391 aa11.32□□□□□ -0.6
VPS53-220ENST00000576149 QSER1Q2KHR3 1735 aa11.32□□□□□ -0.6
VPS53-220ENST00000576149 EFCAB8A8MWE9 144 aa11.31□□□□□ -0.6
VPS53-220ENST00000576149 RNF225M0QZC1 329 aaPredicted RBP11.31□□□□□ -0.6
VPS53-220ENST00000576149 TTLL1O95922 423 aa11.31□□□□□ -0.6
VPS53-220ENST00000576149 UBXN1Q04323 297 aa11.31□□□□□ -0.6
VPS53-220ENST00000576149 TTI2Q6NXR4 508 aa11.31□□□□□ -0.6
VPS53-220ENST00000576149 POTEDQ86YR6 584 aa11.31□□□□□ -0.6
VPS53-220ENST00000576149 UBXN4Q92575 508 aa11.31□□□□□ -0.6
VPS53-220ENST00000576149 COA7Q96BR5 231 aa11.31□□□□□ -0.6
VPS53-220ENST00000576149 MTMR9Q96QG7 549 aa11.31□□□□□ -0.6
VPS53-220ENST00000576149 USP40Q9NVE5 1235 aa11.31□□□□□ -0.6
VPS53-220ENST00000576149 MRFAP1Q9Y605 127 aa11.31□□□□□ -0.6
VPS53-220ENST00000576149 C10orf71Q711Q0 1435 aa11.31□□□□□ -0.6
VPS53-220ENST00000576149 A0A1W2PQC6 194 aa11.31□□□□□ -0.6
VPS53-220ENST00000576149 LGALS16A8MUM7 142 aa11.31□□□□□ -0.6
VPS53-220ENST00000576149 NPR1P16066 1061 aa11.31□□□□□ -0.6
VPS53-220ENST00000576149 HMGB2P26583 209 aaKnown RBP11.31□□□□□ -0.6
VPS53-220ENST00000576149 SHMT1P34896 483 aa11.31□□□□□ -0.6
VPS53-220ENST00000576149 HSPA1LP34931 641 aa11.31□□□□□ -0.6
VPS53-220ENST00000576149 ADCY7P51828 1080 aa11.31□□□□□ -0.6
VPS53-220ENST00000576149 EIF6P56537 245 aaKnown RBP11.31□□□□□ -0.6
VPS53-220ENST00000576149 ZNF543Q08ER8 600 aa11.31□□□□□ -0.6
VPS53-220ENST00000576149 ARHGAP29Q52LW3 1261 aa11.31□□□□□ -0.6
VPS53-220ENST00000576149 HHIPL2Q6UWX4 724 aa11.31□□□□□ -0.6
VPS53-220ENST00000576149 KRT27Q7Z3Y8 459 aa11.31□□□□□ -0.6
VPS53-220ENST00000576149 MB21D1Q8N884 522 aa11.31□□□□□ -0.6
VPS53-220ENST00000576149 ZNF507Q8TCN5 953 aa11.31□□□□□ -0.6
VPS53-220ENST00000576149 NOC3LQ8WTT2 800 aaKnown RBP11.31□□□□□ -0.6
VPS53-220ENST00000576149 CCDC47Q96A33 483 aaKnown RBP11.31□□□□□ -0.6
VPS53-220ENST00000576149 TRIM47Q96LD4 638 aa11.31□□□□□ -0.6
VPS53-220ENST00000576149 NUP88Q99567 741 aaPredicted RBP11.31□□□□□ -0.6
VPS53-220ENST00000576149 LZTFL1Q9NQ48 299 aa11.31□□□□□ -0.6
VPS53-220ENST00000576149 ANKRD31Q8N7Z5 1873 aa11.31□□□□□ -0.6
VPS53-220ENST00000576149 EDIL3O43854 480 aa11.3□□□□□ -0.6
VPS53-220ENST00000576149 TXKP42681 527 aa11.3□□□□□ -0.6
VPS53-220ENST00000576149 FXR2P51116 673 aaKnown RBP eCLIP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms