RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 FANCBQ8NB91 859 aa23.92■■□□□ 1.42
VPS53-210ENST00000571456 NUP133Q8WUM0 1156 aa23.92■■□□□ 1.42
VPS53-210ENST00000571456 SYMPKQ92797 1274 aaKnown RBP23.92■■□□□ 1.42
VPS53-210ENST00000571456 CDX2Q99626 313 aaPredicted RBP23.92■■□□□ 1.42
VPS53-210ENST00000571456 PAGR1Q9BTK6 254 aa23.92■■□□□ 1.42
VPS53-210ENST00000571456 TEX13BQ9BXU2 312 aa23.92■■□□□ 1.42
VPS53-210ENST00000571456 SPATC1LQ9H0A9 340 aa23.92■■□□□ 1.42
VPS53-210ENST00000571456 GPCPD1Q9NPB8 672 aa23.92■■□□□ 1.42
VPS53-210ENST00000571456 GPHNQ9NQX3 736 aaPredicted RBP23.92■■□□□ 1.42
VPS53-210ENST00000571456 MAD2L2Q9UI95 211 aa23.92■■□□□ 1.42
VPS53-210ENST00000571456 GJD2Q9UKL4 321 aa23.92■■□□□ 1.42
VPS53-210ENST00000571456 NID2Q14112 1375 aa23.91■■□□□ 1.42
VPS53-210ENST00000571456 PLXNB2O15031 1838 aa23.91■■□□□ 1.42
VPS53-210ENST00000571456 KLF18A0A0U1RQI7 1052 aa23.91■■□□□ 1.42
VPS53-210ENST00000571456 COL6A1P12109 1028 aa23.91■■□□□ 1.42
VPS53-210ENST00000571456 CPA1P15085 419 aa23.91■■□□□ 1.42
VPS53-210ENST00000571456 RABEP1Q15276 862 aa23.91■■□□□ 1.42
VPS53-210ENST00000571456 REPS2Q8NFH8 660 aa23.91■■□□□ 1.42
VPS53-210ENST00000571456 ZNF274Q96GC6 653 aaPredicted RBP23.91■■□□□ 1.42
VPS53-210ENST00000571456 RANBP17Q9H2T7 1088 aaKnown RBP23.91■■□□□ 1.42
VPS53-210ENST00000571456 MROH8Q9H579 483 aa23.91■■□□□ 1.42
VPS53-210ENST00000571456 TXNRD2Q9NNW7 524 aa23.91■■□□□ 1.42
VPS53-210ENST00000571456 MYH6P13533 1939 aa23.9■■□□□ 1.42
VPS53-210ENST00000571456 CNMDO75829 334 aa23.9■■□□□ 1.42
VPS53-210ENST00000571456 STAT3P40763 770 aa23.9■■□□□ 1.42
VPS53-210ENST00000571456 NEK4P51957 841 aa23.9■■□□□ 1.42
VPS53-210ENST00000571456 LRRC26Q2I0M4 334 aa23.9■■□□□ 1.42
VPS53-210ENST00000571456 TKFCQ3LXA3 575 aa23.9■■□□□ 1.42
VPS53-210ENST00000571456 RIOX2Q8IUF8 465 aa23.9■■□□□ 1.42
VPS53-210ENST00000571456 BTBD7Q9P203 1132 aa23.9■■□□□ 1.42
VPS53-210ENST00000571456 ZNF214Q9UL59 606 aaPredicted RBP23.9■■□□□ 1.42
VPS53-210ENST00000571456 NCOR1O75376 2440 aa23.89■■□□□ 1.42
VPS53-210ENST00000571456 GOLGA8HP0CJ92 632 aa23.89■■□□□ 1.41
VPS53-210ENST00000571456 TMEM132BQ14DG7 1078 aa23.89■■□□□ 1.41
VPS53-210ENST00000571456 MAP3K21Q5TCX8 1036 aa23.89■■□□□ 1.41
VPS53-210ENST00000571456 TTBK2Q6IQ55 1244 aa23.89■■□□□ 1.41
VPS53-210ENST00000571456 MICU3Q86XE3 530 aa23.89■■□□□ 1.41
VPS53-210ENST00000571456 TRIB2Q92519 343 aa23.89■■□□□ 1.41
VPS53-210ENST00000571456 CHMP4CQ96CF2 233 aa23.89■■□□□ 1.41
VPS53-210ENST00000571456 LBHD1Q9BQE6 289 aaPredicted RBP23.89■■□□□ 1.41
VPS53-210ENST00000571456 SPZ1Q9BXG8 430 aa23.89■■□□□ 1.41
VPS53-210ENST00000571456 MAF1Q9H063 256 aa23.89■■□□□ 1.41
VPS53-210ENST00000571456 STRNO43815 780 aa23.88■■□□□ 1.41
VPS53-210ENST00000571456 TOB2Q14106 344 aaPredicted RBP23.88■■□□□ 1.41
VPS53-210ENST00000571456 RTN1Q16799 776 aa23.88■■□□□ 1.41
VPS53-210ENST00000571456 POTEEQ6S8J3 1075 aa23.88■■□□□ 1.41
VPS53-210ENST00000571456 SAMD1Q6SPF0 538 aaPredicted RBP23.88■■□□□ 1.41
VPS53-210ENST00000571456 RASGRP2Q7LDG7 609 aa23.88■■□□□ 1.41
VPS53-210ENST00000571456 RIOX1Q9H6W3 641 aa23.88■■□□□ 1.41
VPS53-210ENST00000571456 FBXO40Q9UH90 709 aa23.88■■□□□ 1.41
VPS53-210ENST00000571456 BRPF3Q9ULD4 1205 aa23.88■■□□□ 1.41
VPS53-210ENST00000571456 GOLGA8BA8MQT2 603 aa23.87■■□□□ 1.41
VPS53-210ENST00000571456 DHX16O60231 1041 aaKnown RBP23.87■■□□□ 1.41
VPS53-210ENST00000571456 ICAM1P05362 532 aa23.87■■□□□ 1.41
VPS53-210ENST00000571456 PRKAR2AP13861 404 aaKnown RBP23.87■■□□□ 1.41
VPS53-210ENST00000571456 SLC16A2P36021 539 aa23.87■■□□□ 1.41
VPS53-210ENST00000571456 METAP2P50579 478 aaKnown RBP eCLIP23.87■■□□□ 1.41
VPS53-210ENST00000571456 APOBRQ0VD83 1088 aa23.87■■□□□ 1.41
VPS53-210ENST00000571456 STAG2Q8N3U4 1231 aa23.87■■□□□ 1.41
VPS53-210ENST00000571456 MOV10L1Q9BXT6 1211 aaKnown RBP23.87■■□□□ 1.41
VPS53-210ENST00000571456 GOLGA8AA7E2F4 631 aa23.86■■□□□ 1.41
VPS53-210ENST00000571456 PLS1Q14651 629 aa23.86■■□□□ 1.41
VPS53-210ENST00000571456 Q3C1V9 767 aa23.86■■□□□ 1.41
VPS53-210ENST00000571456 DHX30Q7L2E3 1194 aaKnown RBP eCLIP23.86■■□□□ 1.41
VPS53-210ENST00000571456 ADGRF4Q8IZF3 695 aa23.86■■□□□ 1.41
VPS53-210ENST00000571456 CHST13Q8NET6 341 aa23.86■■□□□ 1.41
VPS53-210ENST00000571456 MTMR8Q96EF0 704 aa23.86■■□□□ 1.41
VPS53-210ENST00000571456 KIF2CQ99661 725 aa23.86■■□□□ 1.41
VPS53-210ENST00000571456 MYL10Q9BUA6 226 aa23.86■■□□□ 1.41
VPS53-210ENST00000571456 SEMA6BQ9H3T3 888 aa23.86■■□□□ 1.41
VPS53-210ENST00000571456 CWC22Q9HCG8 908 aaKnown RBP23.86■■□□□ 1.41
VPS53-210ENST00000571456 IVNS1ABPQ9Y6Y0 642 aa23.86■■□□□ 1.41
VPS53-210ENST00000571456 ST18O60284 1047 aa23.85■■□□□ 1.41
VPS53-210ENST00000571456 SNRNP48Q6IEG0 339 aaKnown RBP23.85■■□□□ 1.41
VPS53-210ENST00000571456 TMTC3Q6ZXV5 915 aa23.85■■□□□ 1.41
VPS53-210ENST00000571456 ABRAQ8N0Z2 381 aa23.85■■□□□ 1.41
VPS53-210ENST00000571456 SOCS4Q8WXH5 440 aa23.85■■□□□ 1.41
VPS53-210ENST00000571456 UBA5Q9GZZ9 404 aa23.85■■□□□ 1.41
VPS53-210ENST00000571456 JMJD4Q9H9V9 463 aa23.85■■□□□ 1.41
VPS53-210ENST00000571456 NAP1L2Q9ULW6 460 aaPredicted RBP23.85■■□□□ 1.41
VPS53-210ENST00000571456 ZBTB5O15062 677 aa23.84■■□□□ 1.41
VPS53-210ENST00000571456 PDIA3P30101 505 aaKnown RBP23.84■■□□□ 1.41
VPS53-210ENST00000571456 CDC37Q16543 378 aaPredicted RBP23.84■■□□□ 1.41
VPS53-210ENST00000571456 CPLX2Q6PUV4 134 aaKnown RBP23.84■■□□□ 1.41
VPS53-210ENST00000571456 PLEKHH3Q7Z736 793 aa23.84■■□□□ 1.41
VPS53-210ENST00000571456 CPXCR1Q8N123 301 aa23.84■■□□□ 1.41
VPS53-210ENST00000571456 ZNF236Q9UL36 1845 aa23.84■■□□□ 1.41
VPS53-210ENST00000571456 ZNF536O15090 1300 aa23.84■■□□□ 1.41
VPS53-210ENST00000571456 BAZ2BQ9UIF8 2168 aaKnown RBP23.84■■□□□ 1.41
VPS53-210ENST00000571456 ERCC3P19447 782 aa23.83■■□□□ 1.41
VPS53-210ENST00000571456 CYP2B6P20813 491 aa23.83■■□□□ 1.41
VPS53-210ENST00000571456 AK2P54819 239 aa23.83■■□□□ 1.41
VPS53-210ENST00000571456 NCAPG2Q86XI2 1143 aa23.83■■□□□ 1.41
VPS53-210ENST00000571456 RRP36Q96EU6 259 aaKnown RBP23.83■■□□□ 1.41
VPS53-210ENST00000571456 RAVER2Q9HCJ3 691 aaKnown RBP23.83■■□□□ 1.41
VPS53-210ENST00000571456 SEC63Q9UGP8 760 aaKnown RBP23.83■■□□□ 1.41
VPS53-210ENST00000571456 CCPG1Q9ULG6 757 aa23.83■■□□□ 1.41
VPS53-210ENST00000571456 PNMA6FA0A0J9YX94 578 aa23.82■■□□□ 1.4
VPS53-210ENST00000571456 MCM2P49736 904 aa23.82■■□□□ 1.4
VPS53-210ENST00000571456 GPR142Q7Z601 462 aa23.82■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms