RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 APBB1IPQ7Z5R6 666 aaPredicted RBP12.02□□□□□ -0.49
CLK3-226ENST00000569406 NME8Q8N427 588 aa12.02□□□□□ -0.49
CLK3-226ENST00000569406 ZBTB38Q8NAP3 1195 aaPredicted RBP12.02□□□□□ -0.49
CLK3-226ENST00000569406 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.02□□□□□ -0.49
CLK3-226ENST00000569406 MAIP1Q8WWC4 291 aa12.02□□□□□ -0.49
CLK3-226ENST00000569406 ACTR5Q9H9F9 607 aaPredicted RBP12.02□□□□□ -0.49
CLK3-226ENST00000569406 PAIP2BQ9ULR5 123 aaKnown RBP12.02□□□□□ -0.49
CLK3-226ENST00000569406 RPL13P26373 211 aaKnown RBP12.01□□□□□ -0.49
CLK3-226ENST00000569406 ATL3Q6DD88 541 aa12.01□□□□□ -0.49
CLK3-226ENST00000569406 YTHDF3Q7Z739 585 aaKnown RBP12.01□□□□□ -0.49
CLK3-226ENST00000569406 GSPT2Q8IYD1 628 aaKnown RBP12.01□□□□□ -0.49
CLK3-226ENST00000569406 LRRC2Q9BYS8 371 aa12.01□□□□□ -0.49
CLK3-226ENST00000569406 OCEL1Q9H607 264 aa12.01□□□□□ -0.49
CLK3-226ENST00000569406 LNPEPQ9UIQ6 1025 aa12.01□□□□□ -0.49
CLK3-226ENST00000569406 MAP3K15Q6ZN16 1313 aa12.01□□□□□ -0.49
CLK3-226ENST00000569406 SPDYE5A6NIY4 337 aa12.01□□□□□ -0.49
CLK3-226ENST00000569406 NDUFB5O43674 189 aa12.01□□□□□ -0.49
CLK3-226ENST00000569406 PSMA5P28066 241 aa12.01□□□□□ -0.49
CLK3-226ENST00000569406 SEC24CP53992 1094 aa12.01□□□□□ -0.49
CLK3-226ENST00000569406 GIGYF2Q6Y7W6 1299 aaKnown RBP12.01□□□□□ -0.49
CLK3-226ENST00000569406 NLRP10Q86W26 655 aa12.01□□□□□ -0.49
CLK3-226ENST00000569406 SLF2Q8IX21 1173 aa12.01□□□□□ -0.49
CLK3-226ENST00000569406 ZFAND2BQ8WV99 257 aa12.01□□□□□ -0.49
CLK3-226ENST00000569406 SPIRE2Q8WWL2 714 aa12.01□□□□□ -0.49
CLK3-226ENST00000569406 KIFC2Q96AC6 838 aa12.01□□□□□ -0.49
CLK3-226ENST00000569406 NEK1Q96PY6 1258 aa12.01□□□□□ -0.49
CLK3-226ENST00000569406 HINFPQ9BQA5 517 aa12.01□□□□□ -0.49
CLK3-226ENST00000569406 VIPAS39Q9H9C1 493 aa12.01□□□□□ -0.49
CLK3-226ENST00000569406 TMOD3Q9NYL9 352 aa12.01□□□□□ -0.49
CLK3-226ENST00000569406 CDC23Q9UJX2 597 aa12.01□□□□□ -0.49
CLK3-226ENST00000569406 ECM29Q5VYK3 1845 aa12.01□□□□□ -0.49
CLK3-226ENST00000569406 N4BP3O15049 544 aa12□□□□□ -0.49
CLK3-226ENST00000569406 SUPT3HO75486 399 aa12□□□□□ -0.49
CLK3-226ENST00000569406 INHBCP55103 352 aa12□□□□□ -0.49
CLK3-226ENST00000569406 TSNAXIP1Q2TAA8 658 aa12□□□□□ -0.49
CLK3-226ENST00000569406 STK11IPQ8N1F8 1099 aa12□□□□□ -0.49
CLK3-226ENST00000569406 TTLL11Q8NHH1 800 aa12□□□□□ -0.49
CLK3-226ENST00000569406 ZNF473Q8WTR7 871 aaKnown RBP12□□□□□ -0.49
CLK3-226ENST00000569406 DSCC1Q9BVC3 393 aa12□□□□□ -0.49
CLK3-226ENST00000569406 EBF2Q9HAK2 575 aa12□□□□□ -0.49
CLK3-226ENST00000569406 NOP53Q9NZM5 478 aaKnown RBP12□□□□□ -0.49
CLK3-226ENST00000569406 STK24Q9Y6E0 443 aa12□□□□□ -0.49
CLK3-226ENST00000569406 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12□□□□□ -0.49
CLK3-226ENST00000569406 HDLBPQ00341 1268 aaKnown RBP12□□□□□ -0.49
CLK3-226ENST00000569406 CBX3Q13185 183 aa12□□□□□ -0.49
CLK3-226ENST00000569406 ILDR1Q86SU0 546 aaPredicted RBP12□□□□□ -0.49
CLK3-226ENST00000569406 RMDN2Q96LZ7 410 aa12□□□□□ -0.49
CLK3-226ENST00000569406 UBA5Q9GZZ9 404 aa12□□□□□ -0.49
CLK3-226ENST00000569406 GOLGB1Q14789 3259 aaKnown RBP12□□□□□ -0.49
CLK3-226ENST00000569406 COL5A3P25940 1745 aaPredicted RBP12□□□□□ -0.49
CLK3-226ENST00000569406 DYNC1I2Q13409 638 aaKnown RBP12□□□□□ -0.49
CLK3-226ENST00000569406 KCTD16Q68DU8 428 aa12□□□□□ -0.49
CLK3-226ENST00000569406 STAG2Q8N3U4 1231 aa12□□□□□ -0.49
CLK3-226ENST00000569406 NOA1Q8NC60 698 aaKnown RBP12□□□□□ -0.49
CLK3-226ENST00000569406 COG1Q8WTW3 980 aa12□□□□□ -0.49
CLK3-226ENST00000569406 ZBTB1Q9Y2K1 713 aa12□□□□□ -0.49
CLK3-226ENST00000569406 LAMB2P55268 1798 aa11.99□□□□□ -0.49
CLK3-226ENST00000569406 DNM1LO00429 736 aa11.99□□□□□ -0.49
CLK3-226ENST00000569406 MAP3K13O43283 966 aa11.99□□□□□ -0.49
CLK3-226ENST00000569406 KIF5CO60282 957 aa11.99□□□□□ -0.49
CLK3-226ENST00000569406 LMOD1P29536 600 aaPredicted RBP11.99□□□□□ -0.49
CLK3-226ENST00000569406 RESTQ13127 1097 aa11.99□□□□□ -0.49
CLK3-226ENST00000569406 CCDC73Q6ZRK6 1079 aa11.99□□□□□ -0.49
CLK3-226ENST00000569406 CCDC148Q8NFR7 591 aa11.99□□□□□ -0.49
CLK3-226ENST00000569406 NOC3LQ8WTT2 800 aaKnown RBP11.99□□□□□ -0.49
CLK3-226ENST00000569406 NEUROD6Q96NK8 337 aa11.99□□□□□ -0.49
CLK3-226ENST00000569406 GREM2Q9H772 168 aa11.99□□□□□ -0.49
CLK3-226ENST00000569406 SLMAPQ14BN4 828 aa11.99□□□□□ -0.49
CLK3-226ENST00000569406 RBM43Q6ZSC3 357 aaKnown RBP11.99□□□□□ -0.49
CLK3-226ENST00000569406 FBXL16Q8N461 479 aa11.99□□□□□ -0.49
CLK3-226ENST00000569406 CLIP3Q96DZ5 547 aa11.99□□□□□ -0.49
CLK3-226ENST00000569406 CCDC85AQ96PX6 553 aaPredicted RBP11.99□□□□□ -0.49
CLK3-226ENST00000569406 SCAND2PQ9GZW5 306 aaPredicted RBP11.99□□□□□ -0.49
CLK3-226ENST00000569406 ZWILCHQ9H900 591 aa11.99□□□□□ -0.49
CLK3-226ENST00000569406 GPHNQ9NQX3 736 aaPredicted RBP11.99□□□□□ -0.49
CLK3-226ENST00000569406 A6NHS1 94 aa11.99□□□□□ -0.49
CLK3-226ENST00000569406 LUC7L3O95232 432 aaKnown RBP11.99□□□□□ -0.49
CLK3-226ENST00000569406 GNAQP50148 359 aa11.99□□□□□ -0.49
CLK3-226ENST00000569406 GUCY1A3Q02108 690 aa11.99□□□□□ -0.49
CLK3-226ENST00000569406 SPRED3Q2MJR0 410 aa11.99□□□□□ -0.49
CLK3-226ENST00000569406 CEP128Q6ZU80 1094 aa11.99□□□□□ -0.49
CLK3-226ENST00000569406 OPTNQ96CV9 577 aa11.99□□□□□ -0.49
CLK3-226ENST00000569406 PGBD1Q96JS3 809 aa11.99□□□□□ -0.49
CLK3-226ENST00000569406 PUS7LQ9H0K6 701 aaKnown RBP11.99□□□□□ -0.49
CLK3-226ENST00000569406 CEP126Q9P2H0 1117 aa11.99□□□□□ -0.49
CLK3-226ENST00000569406 DENND2AQ9ULE3 1009 aa11.99□□□□□ -0.49
CLK3-226ENST00000569406 E7EVH7 732 aa11.98□□□□□ -0.49
CLK3-226ENST00000569406 E7EWF7 191 aa11.98□□□□□ -0.49
CLK3-226ENST00000569406 STXBP3O00186 592 aa11.98□□□□□ -0.49
CLK3-226ENST00000569406 FAM200BP0CF97 657 aa11.98□□□□□ -0.49
CLK3-226ENST00000569406 MYCLP1P12525 358 aaPredicted RBP11.98□□□□□ -0.49
CLK3-226ENST00000569406 ALDH3A1P30838 453 aa11.98□□□□□ -0.49
CLK3-226ENST00000569406 MCAMP43121 646 aa11.98□□□□□ -0.49
CLK3-226ENST00000569406 TOGARAM2Q6ZUX3 1019 aa11.98□□□□□ -0.49
CLK3-226ENST00000569406 NSUN7Q8NE18 718 aaKnown RBP11.98□□□□□ -0.49
CLK3-226ENST00000569406 WDR35Q9P2L0 1181 aa11.98□□□□□ -0.49
CLK3-226ENST00000569406 BCL9LQ86UU0 1499 aa11.98□□□□□ -0.49
CLK3-226ENST00000569406 EVI5O60447 810 aa11.98□□□□□ -0.49
CLK3-226ENST00000569406 PDHA1P08559 390 aa11.98□□□□□ -0.49
CLK3-226ENST00000569406 PDCP20941 246 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms