RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 MCCP23508 829 aa19.5■□□□□ 0.71
CLN3-208ENST00000561505 SLC4A3P48751 1232 aa19.5■□□□□ 0.71
CLN3-208ENST00000561505 ALX1Q15699 326 aa19.5■□□□□ 0.71
CLN3-208ENST00000561505 IQSEC1Q6DN90 963 aa19.5■□□□□ 0.71
CLN3-208ENST00000561505 PSRC1Q6PGN9 363 aaPredicted RBP19.5■□□□□ 0.71
CLN3-208ENST00000561505 BTNL9Q6UXG8 535 aa19.5■□□□□ 0.71
CLN3-208ENST00000561505 OTUD7AQ8TE49 926 aaPredicted RBP19.5■□□□□ 0.71
CLN3-208ENST00000561505 TIFAQ96CG3 184 aa19.5■□□□□ 0.71
CLN3-208ENST00000561505 TRERF1Q96PN7 1200 aa19.5■□□□□ 0.71
CLN3-208ENST00000561505 PBX4Q9BYU1 374 aa19.5■□□□□ 0.71
CLN3-208ENST00000561505 IL23AQ9NPF7 189 aa19.5■□□□□ 0.71
CLN3-208ENST00000561505 CYP39A1Q9NYL5 469 aa19.5■□□□□ 0.71
CLN3-208ENST00000561505 PRR12Q9ULL5 1215 aa19.5■□□□□ 0.71
CLN3-208ENST00000561505 LRRC37A2A6NM11 1700 aa19.5■□□□□ 0.71
CLN3-208ENST00000561505 LOC102724159A0A0B4J2E5 919 aa19.49■□□□□ 0.71
CLN3-208ENST00000561505 ORC4O43929 436 aa19.49■□□□□ 0.71
CLN3-208ENST00000561505 SMPD1P17405 629 aa19.49■□□□□ 0.71
CLN3-208ENST00000561505 BEX3Q00994 111 aa19.49■□□□□ 0.71
CLN3-208ENST00000561505 PWP2Q15269 919 aaKnown RBP19.49■□□□□ 0.71
CLN3-208ENST00000561505 ZNF365Q70YC5 407 aa19.49■□□□□ 0.71
CLN3-208ENST00000561505 TICAM2Q86XR7 235 aa19.49■□□□□ 0.71
CLN3-208ENST00000561505 USP38Q8NB14 1042 aa19.49■□□□□ 0.71
CLN3-208ENST00000561505 SYMPKQ92797 1274 aaKnown RBP19.49■□□□□ 0.71
CLN3-208ENST00000561505 VWCEQ96DN2 955 aa19.49■□□□□ 0.71
CLN3-208ENST00000561505 HOMER2Q9NSB8 354 aa19.49■□□□□ 0.71
CLN3-208ENST00000561505 FSCN1Q16658 493 aaKnown RBP19.48■□□□□ 0.71
CLN3-208ENST00000561505 MUM1L1Q5H9M0 696 aa19.48■□□□□ 0.71
CLN3-208ENST00000561505 AKNAD1Q5T1N1 836 aa19.48■□□□□ 0.71
CLN3-208ENST00000561505 CXCL17Q6UXB2 119 aa19.48■□□□□ 0.71
CLN3-208ENST00000561505 GRXCR1A8MXD5 290 aa19.47■□□□□ 0.71
CLN3-208ENST00000561505 ICAM1P05362 532 aa19.47■□□□□ 0.71
CLN3-208ENST00000561505 PBX2P40425 430 aa19.47■□□□□ 0.71
CLN3-208ENST00000561505 ITGA7Q13683 1181 aa19.47■□□□□ 0.71
CLN3-208ENST00000561505 KCTD1Q719H9 257 aa19.47■□□□□ 0.71
CLN3-208ENST00000561505 TLK2Q86UE8 772 aa19.47■□□□□ 0.71
CLN3-208ENST00000561505 VTI1AQ96AJ9 217 aa19.47■□□□□ 0.71
CLN3-208ENST00000561505 FSD1Q9BTV5 496 aa19.47■□□□□ 0.71
CLN3-208ENST00000561505 RANBP17Q9H2T7 1088 aaKnown RBP19.47■□□□□ 0.71
CLN3-208ENST00000561505 VTA1Q9NP79 307 aa19.47■□□□□ 0.71
CLN3-208ENST00000561505 INCENPQ9NQS7 918 aa19.47■□□□□ 0.71
CLN3-208ENST00000561505 PDGFCQ9NRA1 345 aa19.47■□□□□ 0.71
CLN3-208ENST00000561505 RBM47A0AV96 593 aaKnown RBP19.46■□□□□ 0.71
CLN3-208ENST00000561505 ALAS1P13196 640 aa19.46■□□□□ 0.71
CLN3-208ENST00000561505 MX1P20591 662 aa19.46■□□□□ 0.71
CLN3-208ENST00000561505 CYP2C18P33260 490 aa19.46■□□□□ 0.71
CLN3-208ENST00000561505 DCAF4Q8WV16 495 aa19.46■□□□□ 0.71
CLN3-208ENST00000561505 NOC4LQ9BVI4 516 aaKnown RBP19.46■□□□□ 0.71
CLN3-208ENST00000561505 PPP1R12CQ9BZL4 782 aa19.46■□□□□ 0.71
CLN3-208ENST00000561505 TCP11L1Q9NUJ3 509 aa19.46■□□□□ 0.71
CLN3-208ENST00000561505 STX8Q9UNK0 236 aa19.46■□□□□ 0.71
CLN3-208ENST00000561505 LCTP09848 1927 aa19.46■□□□□ 0.71
CLN3-208ENST00000561505 TSPY2A6NKD2 308 aa19.45■□□□□ 0.7
CLN3-208ENST00000561505 NMT2O60551 498 aa19.45■□□□□ 0.7
CLN3-208ENST00000561505 ACRP10323 421 aa19.45■□□□□ 0.7
CLN3-208ENST00000561505 CTDSPL2Q05D32 466 aa19.45■□□□□ 0.7
CLN3-208ENST00000561505 DUSP28Q4G0W2 176 aa19.45■□□□□ 0.7
CLN3-208ENST00000561505 TJAP1Q5JTD0 557 aa19.45■□□□□ 0.7
CLN3-208ENST00000561505 TMEM63BQ5T3F8 832 aa19.45■□□□□ 0.7
CLN3-208ENST00000561505 HIPK3Q9H422 1215 aa19.45■□□□□ 0.7
CLN3-208ENST00000561505 PRDM6Q9NQX0 595 aa19.45■□□□□ 0.7
CLN3-208ENST00000561505 CXXC1Q9P0U4 656 aaPredicted RBP19.45■□□□□ 0.7
CLN3-208ENST00000561505 UMODL1Q5DID0 1318 aa19.45■□□□□ 0.7
CLN3-208ENST00000561505 DYNC1LI2O43237 492 aaPredicted RBP19.44■□□□□ 0.7
CLN3-208ENST00000561505 ZEB2O60315 1214 aa19.44■□□□□ 0.7
CLN3-208ENST00000561505 FGBP02675 491 aa19.44■□□□□ 0.7
CLN3-208ENST00000561505 RAB30Q15771 203 aa19.44■□□□□ 0.7
CLN3-208ENST00000561505 VPS53Q5VIR6 699 aa19.44■□□□□ 0.7
CLN3-208ENST00000561505 RASGRP2Q7LDG7 609 aa19.44■□□□□ 0.7
CLN3-208ENST00000561505 AP5M1Q9H0R1 490 aa19.44■□□□□ 0.7
CLN3-208ENST00000561505 WNT8AQ9H1J5 351 aa19.44■□□□□ 0.7
CLN3-208ENST00000561505 DDX49Q9Y6V7 483 aaKnown RBP19.44■□□□□ 0.7
CLN3-208ENST00000561505 CHD7Q9P2D1 2997 aa19.44■□□□□ 0.7
CLN3-208ENST00000561505 B4GALT4O60513 344 aa19.43■□□□□ 0.7
CLN3-208ENST00000561505 PTGS1P23219 599 aa19.43■□□□□ 0.7
CLN3-208ENST00000561505 ADGRE1Q14246 886 aa19.43■□□□□ 0.7
CLN3-208ENST00000561505 TRPV6Q9H1D0 765 aa19.43■□□□□ 0.7
CLN3-208ENST00000561505 HELLSQ9NRZ9 838 aa19.43■□□□□ 0.7
CLN3-208ENST00000561505 CCPG1Q9ULG6 757 aa19.43■□□□□ 0.7
CLN3-208ENST00000561505 ZMYM6O95789 1325 aa19.43■□□□□ 0.7
CLN3-208ENST00000561505 SNAP25P60880 206 aa19.42■□□□□ 0.7
CLN3-208ENST00000561505 IKQ13123 557 aaPredicted RBP19.42■□□□□ 0.7
CLN3-208ENST00000561505 FBXO16Q8IX29 292 aaPredicted RBP19.42■□□□□ 0.7
CLN3-208ENST00000561505 ATXN2LQ8WWM7 1075 aaKnown RBP19.42■□□□□ 0.7
CLN3-208ENST00000561505 EVI5LQ96CN4 794 aa19.42■□□□□ 0.7
CLN3-208ENST00000561505 PURBQ96QR8 312 aaKnown RBP19.42■□□□□ 0.7
CLN3-208ENST00000561505 GAS2L1Q99501 681 aaPredicted RBP19.42■□□□□ 0.7
CLN3-208ENST00000561505 ADD3Q9UEY8 706 aaKnown RBP19.42■□□□□ 0.7
CLN3-208ENST00000561505 FGAP02671 866 aa19.41■□□□□ 0.7
CLN3-208ENST00000561505 SNHG28P0DPA3 235 aa19.41■□□□□ 0.7
CLN3-208ENST00000561505 TOP1P11387 765 aaKnown RBP19.41■□□□□ 0.7
CLN3-208ENST00000561505 EDNRBP24530 442 aa19.41■□□□□ 0.7
CLN3-208ENST00000561505 ALDH5A1P51649 535 aaPredicted RBP19.41■□□□□ 0.7
CLN3-208ENST00000561505 BAATQ14032 418 aaPredicted RBP19.41■□□□□ 0.7
CLN3-208ENST00000561505 TTBK2Q6IQ55 1244 aa19.41■□□□□ 0.7
CLN3-208ENST00000561505 NOL8Q76FK4 1167 aaKnown RBP19.41■□□□□ 0.7
CLN3-208ENST00000561505 CLEC4DQ8WXI8 215 aa19.41■□□□□ 0.7
CLN3-208ENST00000561505 TMEM47Q9BQJ4 181 aa19.41■□□□□ 0.7
CLN3-208ENST00000561505 ALDH8A1Q9H2A2 487 aaPredicted RBP19.41■□□□□ 0.7
CLN3-208ENST00000561505 MTIF3Q9H2K0 278 aaKnown RBP19.41■□□□□ 0.7
CLN3-208ENST00000561505 PRDM12Q9H4Q4 367 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms