RNA–Protein interactions for RNA: ENST00000558040.5

SNX1-203, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 774 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-203ENST00000558040 RAVER2Q9HCJ3 691 aaKnown RBP19.33■□□□□ 0.68
SNX1-203ENST00000558040 RLFQ13129 1914 aa19.33■□□□□ 0.68
SNX1-203ENST00000558040 CCDC194A0A1B0GVG4 234 aa19.32■□□□□ 0.68
SNX1-203ENST00000558040 ATP2A1O14983 1001 aa19.32■□□□□ 0.68
SNX1-203ENST00000558040 BAG4O95429 457 aaKnown RBP19.32■□□□□ 0.68
SNX1-203ENST00000558040 KRT85P78386 507 aa19.32■□□□□ 0.68
SNX1-203ENST00000558040 FOXD4L6Q3SYB3 417 aaPredicted RBP19.32■□□□□ 0.68
SNX1-203ENST00000558040 MYSM1Q5VVJ2 828 aa19.32■□□□□ 0.68
SNX1-203ENST00000558040 FOXD4L3Q6VB84 417 aaPredicted RBP19.32■□□□□ 0.68
SNX1-203ENST00000558040 KRT25Q7Z3Z0 450 aa19.32■□□□□ 0.68
SNX1-203ENST00000558040 REPS2Q8NFH8 660 aa19.32■□□□□ 0.68
SNX1-203ENST00000558040 BRI3BPQ8WY22 251 aa19.32■□□□□ 0.68
SNX1-203ENST00000558040 NOL7Q9UMY1 257 aaKnown RBP19.32■□□□□ 0.68
SNX1-203ENST00000558040 TESPA1A2RU30 521 aaPredicted RBP19.31■□□□□ 0.68
SNX1-203ENST00000558040 GOLGA6L22H0YM25 854 aa19.31■□□□□ 0.68
SNX1-203ENST00000558040 NCLP19338 710 aaKnown RBP19.31■□□□□ 0.68
SNX1-203ENST00000558040 HERVK_113P62684 666 aa19.31■□□□□ 0.68
SNX1-203ENST00000558040 DNM1Q05193 864 aaKnown RBP19.31■□□□□ 0.68
SNX1-203ENST00000558040 TKFCQ3LXA3 575 aa19.31■□□□□ 0.68
SNX1-203ENST00000558040 RILPL1Q5EBL4 403 aa19.31■□□□□ 0.68
SNX1-203ENST00000558040 TNFRSF25Q93038 417 aa19.31■□□□□ 0.68
SNX1-203ENST00000558040 AGBL1Q96MI9 1066 aa19.31■□□□□ 0.68
SNX1-203ENST00000558040 P2RX7Q99572 595 aaKnown RBP19.31■□□□□ 0.68
SNX1-203ENST00000558040 TEX13BQ9BXU2 312 aa19.31■□□□□ 0.68
SNX1-203ENST00000558040 CFAP45Q9UL16 551 aa19.31■□□□□ 0.68
SNX1-203ENST00000558040 PCDHA6Q9UN73 950 aa19.31■□□□□ 0.68
SNX1-203ENST00000558040 PCDHA8Q9Y5H6 950 aa19.31■□□□□ 0.68
SNX1-203ENST00000558040 A0A0G2JMZ2 1700 aa19.31■□□□□ 0.68
SNX1-203ENST00000558040 BTBD19C9JJ37 291 aa19.3■□□□□ 0.68
SNX1-203ENST00000558040 M0R2N6 131 aa19.3■□□□□ 0.68
SNX1-203ENST00000558040 PDHXO00330 501 aa19.3■□□□□ 0.68
SNX1-203ENST00000558040 ALAS1P13196 640 aa19.3■□□□□ 0.68
SNX1-203ENST00000558040 INHBEP58166 350 aa19.3■□□□□ 0.68
SNX1-203ENST00000558040 CSPP1Q1MSJ5 1256 aa19.3■□□□□ 0.68
SNX1-203ENST00000558040 FAM173BQ6P4H8 233 aa19.3■□□□□ 0.68
SNX1-203ENST00000558040 MCF2L2Q86YR7 1114 aa19.3■□□□□ 0.68
SNX1-203ENST00000558040 ZNF214Q9UL59 606 aaPredicted RBP19.3■□□□□ 0.68
SNX1-203ENST00000558040 MYH15Q9Y2K3 1946 aa19.29■□□□□ 0.68
SNX1-203ENST00000558040 TRAPPC10P48553 1259 aa19.29■□□□□ 0.68
SNX1-203ENST00000558040 AP3B2Q13367 1082 aa19.29■□□□□ 0.68
SNX1-203ENST00000558040 TMEM132BQ14DG7 1078 aa19.29■□□□□ 0.68
SNX1-203ENST00000558040 SNRNP48Q6IEG0 339 aaKnown RBP19.29■□□□□ 0.68
SNX1-203ENST00000558040 PIK3AP1Q6ZUJ8 805 aa19.29■□□□□ 0.68
SNX1-203ENST00000558040 PAXIP1Q6ZW49 1069 aaPredicted RBP19.29■□□□□ 0.68
SNX1-203ENST00000558040 SAMD3Q8N6K7 520 aa19.29■□□□□ 0.68
SNX1-203ENST00000558040 PARK7Q99497 189 aaKnown RBP19.29■□□□□ 0.68
SNX1-203ENST00000558040 ZCCHC17Q9NP64 241 aaKnown RBP19.29■□□□□ 0.68
SNX1-203ENST00000558040 CREBZFQ9NS37 354 aa19.29■□□□□ 0.68
SNX1-203ENST00000558040 BIN2Q9UBW5 565 aaPredicted RBP19.29■□□□□ 0.68
SNX1-203ENST00000558040 PIK3CDO00329 1044 aa19.28■□□□□ 0.68
SNX1-203ENST00000558040 FOSP01100 380 aaPredicted RBP19.28■□□□□ 0.68
SNX1-203ENST00000558040 COPB2P35606 906 aa19.28■□□□□ 0.68
SNX1-203ENST00000558040 STAT3P40763 770 aa19.28■□□□□ 0.68
SNX1-203ENST00000558040 CLK2P49760 499 aaKnown RBP19.28■□□□□ 0.68
SNX1-203ENST00000558040 APLP1P51693 650 aa19.28■□□□□ 0.68
SNX1-203ENST00000558040 SREBF2Q12772 1141 aa19.28■□□□□ 0.68
SNX1-203ENST00000558040 PLS1Q14651 629 aa19.28■□□□□ 0.68
SNX1-203ENST00000558040 NONOQ15233 471 aaKnown RBP eCLIP19.28■□□□□ 0.68
SNX1-203ENST00000558040 RASGRP4Q8TDF6 673 aa19.28■□□□□ 0.68
SNX1-203ENST00000558040 SMCR8Q8TEV9 937 aaPredicted RBP19.28■□□□□ 0.68
SNX1-203ENST00000558040 TRERF1Q96PN7 1200 aa19.28■□□□□ 0.68
SNX1-203ENST00000558040 SCAND2PQ9GZW5 306 aaPredicted RBP19.28■□□□□ 0.68
SNX1-203ENST00000558040 MAF1Q9H063 256 aa19.28■□□□□ 0.68
SNX1-203ENST00000558040 RABGAP1Q9Y3P9 1069 aa19.28■□□□□ 0.68
SNX1-203ENST00000558040 COL11A1P12107 1806 aaPredicted RBP19.28■□□□□ 0.68
SNX1-203ENST00000558040 FAM155AB1AL88 458 aaPredicted RBP19.27■□□□□ 0.68
SNX1-203ENST00000558040 GCOM1H8Y6P7 765 aaPredicted RBP19.27■□□□□ 0.68
SNX1-203ENST00000558040 CFBP00751 764 aa19.27■□□□□ 0.68
SNX1-203ENST00000558040 POLR2MP0CAP2 368 aa19.27■□□□□ 0.68
SNX1-203ENST00000558040 TAL1P17542 331 aaPredicted RBP19.27■□□□□ 0.68
SNX1-203ENST00000558040 UBE2SQ16763 222 aa19.27■□□□□ 0.68
SNX1-203ENST00000558040 JAKMIP3Q5VZ66 844 aa19.27■□□□□ 0.68
SNX1-203ENST00000558040 PAGR1Q9BTK6 254 aa19.27■□□□□ 0.68
SNX1-203ENST00000558040 HOMER2Q9NSB8 354 aa19.27■□□□□ 0.68
SNX1-203ENST00000558040 RNF146Q9NTX7 359 aa19.27■□□□□ 0.68
SNX1-203ENST00000558040 MAP3K20Q9NYL2 800 aaKnown RBP19.27■□□□□ 0.68
SNX1-203ENST00000558040 CNPY2Q9Y2B0 182 aa19.27■□□□□ 0.68
SNX1-203ENST00000558040 SPDYE3A6NKU9 549 aa19.26■□□□□ 0.67
SNX1-203ENST00000558040 DDX11L8A8MPP1 907 aa19.26■□□□□ 0.67
SNX1-203ENST00000558040 MEIS2O14770 477 aa19.26■□□□□ 0.67
SNX1-203ENST00000558040 OPLAHO14841 1288 aa19.26■□□□□ 0.67
SNX1-203ENST00000558040 ADAMTS3O15072 1205 aa19.26■□□□□ 0.67
SNX1-203ENST00000558040 GCLCP48506 637 aaPredicted RBP19.26■□□□□ 0.67
SNX1-203ENST00000558040 USP17L6PQ6QN14 398 aa19.26■□□□□ 0.67
SNX1-203ENST00000558040 RIOX2Q8IUF8 465 aa19.26■□□□□ 0.67
SNX1-203ENST00000558040 FAM43AQ8N2R8 423 aa19.26■□□□□ 0.67
SNX1-203ENST00000558040 CHST13Q8NET6 341 aa19.26■□□□□ 0.67
SNX1-203ENST00000558040 CLEC4DQ8WXI8 215 aa19.26■□□□□ 0.67
SNX1-203ENST00000558040 USP28Q96RU2 1077 aa19.26■□□□□ 0.67
SNX1-203ENST00000558040 SPATC1LQ9H0A9 340 aa19.26■□□□□ 0.67
SNX1-203ENST00000558040 EHMT1Q9H9B1 1298 aa19.26■□□□□ 0.67
SNX1-203ENST00000558040 POLR3EQ9NVU0 708 aa19.26■□□□□ 0.67
SNX1-203ENST00000558040 TMEM260Q9NX78 707 aa19.26■□□□□ 0.67
SNX1-203ENST00000558040 RTEL1Q9NZ71 1219 aa19.26■□□□□ 0.67
SNX1-203ENST00000558040 BTBD7Q9P203 1132 aa19.26■□□□□ 0.67
SNX1-203ENST00000558040 TFIP11Q9UBB9 837 aaKnown RBP19.26■□□□□ 0.67
SNX1-203ENST00000558040 FBXO40Q9UH90 709 aa19.26■□□□□ 0.67
SNX1-203ENST00000558040 FIBPO43427 364 aa19.25■□□□□ 0.67
SNX1-203ENST00000558040 SLC25A27O95847 323 aa19.25■□□□□ 0.67
SNX1-203ENST00000558040 CYP2C8P10632 490 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms