RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 MXD3Q9BW11 206 aa13.54□□□□□ -0.24
CCDC88C-211ENST00000556726 TCEAL9Q9UHQ7 104 aa13.54□□□□□ -0.24
CCDC88C-211ENST00000556726 CNTNAP5Q8WYK1 1306 aa13.54□□□□□ -0.24
CCDC88C-211ENST00000556726 MED1Q15648 1581 aaPredicted RBP13.54□□□□□ -0.24
CCDC88C-211ENST00000556726 RGPD5Q99666 1765 aa13.54□□□□□ -0.24
CCDC88C-211ENST00000556726 GRIK5Q16478 980 aa13.54□□□□□ -0.24
CCDC88C-211ENST00000556726 TBC1D10BQ4KMP7 808 aaPredicted RBP13.54□□□□□ -0.24
CCDC88C-211ENST00000556726 MSL1Q68DK7 614 aa13.54□□□□□ -0.24
CCDC88C-211ENST00000556726 SND1Q7KZF4 910 aaKnown RBP eCLIP13.54□□□□□ -0.24
CCDC88C-211ENST00000556726 POTEDQ86YR6 584 aa13.54□□□□□ -0.24
CCDC88C-211ENST00000556726 DUSP10Q9Y6W6 482 aa13.54□□□□□ -0.24
CCDC88C-211ENST00000556726 BICDL2A1A5D9 508 aa13.54□□□□□ -0.24
CCDC88C-211ENST00000556726 MEIS1O00470 390 aa13.54□□□□□ -0.24
CCDC88C-211ENST00000556726 ZEB2O60315 1214 aa13.54□□□□□ -0.24
CCDC88C-211ENST00000556726 N4BP1O75113 896 aaKnown RBP13.54□□□□□ -0.24
CCDC88C-211ENST00000556726 CDK8P49336 464 aa13.54□□□□□ -0.24
CCDC88C-211ENST00000556726 ARHGEF1Q92888 912 aaKnown RBP13.54□□□□□ -0.24
CCDC88C-211ENST00000556726 SECISBP2LQ93073 1101 aaKnown RBP13.54□□□□□ -0.24
CCDC88C-211ENST00000556726 CEP95Q96GE4 821 aa13.54□□□□□ -0.24
CCDC88C-211ENST00000556726 L2HGDHQ9H9P8 463 aa13.54□□□□□ -0.24
CCDC88C-211ENST00000556726 PLA2G4AP47712 749 aa13.53□□□□□ -0.24
CCDC88C-211ENST00000556726 PMS1P54277 932 aaKnown RBP13.53□□□□□ -0.24
CCDC88C-211ENST00000556726 VSNL1P62760 191 aa13.53□□□□□ -0.24
CCDC88C-211ENST00000556726 STK4Q13043 487 aa13.53□□□□□ -0.24
CCDC88C-211ENST00000556726 ZSCAN26Q16670 478 aa13.53□□□□□ -0.24
CCDC88C-211ENST00000556726 UTP14CQ5TAP6 766 aaKnown RBP13.53□□□□□ -0.24
CCDC88C-211ENST00000556726 TAF4BQ92750 862 aa13.53□□□□□ -0.24
CCDC88C-211ENST00000556726 ALS2CR12Q96Q35 445 aa13.53□□□□□ -0.24
CCDC88C-211ENST00000556726 PANX2Q96RD6 677 aa13.53□□□□□ -0.24
CCDC88C-211ENST00000556726 RWDD2AQ9UIY3 292 aa13.53□□□□□ -0.24
CCDC88C-211ENST00000556726 TDP2O95551 362 aa13.53□□□□□ -0.24
CCDC88C-211ENST00000556726 MAP9Q49MG5 647 aa13.53□□□□□ -0.24
CCDC88C-211ENST00000556726 ODF2Q5BJF6 829 aa13.53□□□□□ -0.24
CCDC88C-211ENST00000556726 SPICE1Q8N0Z3 855 aa13.53□□□□□ -0.24
CCDC88C-211ENST00000556726 RIN2Q8WYP3 895 aaPredicted RBP13.53□□□□□ -0.24
CCDC88C-211ENST00000556726 NAA15Q9BXJ9 866 aaKnown RBP13.53□□□□□ -0.24
CCDC88C-211ENST00000556726 PPP1R1BQ9UD71 204 aaPredicted RBP13.53□□□□□ -0.24
CCDC88C-211ENST00000556726 LRRC37A3O60309 1634 aa13.53□□□□□ -0.24
CCDC88C-211ENST00000556726 ADCY7P51828 1080 aa13.53□□□□□ -0.24
CCDC88C-211ENST00000556726 ERVK-24P63145 666 aa13.53□□□□□ -0.24
CCDC88C-211ENST00000556726 MDM2Q00987 491 aaPredicted RBP13.53□□□□□ -0.24
CCDC88C-211ENST00000556726 RASSF7Q02833 373 aa13.53□□□□□ -0.24
CCDC88C-211ENST00000556726 KRT25Q7Z3Z0 450 aa13.53□□□□□ -0.24
CCDC88C-211ENST00000556726 MB21D1Q8N884 522 aa13.53□□□□□ -0.24
CCDC88C-211ENST00000556726 TSPYL1Q9H0U9 437 aa13.53□□□□□ -0.24
CCDC88C-211ENST00000556726 ZBTB21Q9ULJ3 1066 aa13.53□□□□□ -0.24
CCDC88C-211ENST00000556726 FHOD1Q9Y613 1164 aa13.53□□□□□ -0.24
CCDC88C-211ENST00000556726 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.52□□□□□ -0.24
CCDC88C-211ENST00000556726 H0YHG0 523 aa13.52□□□□□ -0.24
CCDC88C-211ENST00000556726 RNF225M0QZC1 329 aaPredicted RBP13.52□□□□□ -0.24
CCDC88C-211ENST00000556726 MOCS3O95396 460 aa13.52□□□□□ -0.24
CCDC88C-211ENST00000556726 UBXN2AP68543 259 aa13.52□□□□□ -0.24
CCDC88C-211ENST00000556726 MAP3K9P80192 1104 aa13.52□□□□□ -0.24
CCDC88C-211ENST00000556726 TMC4Q7Z404 712 aa13.52□□□□□ -0.24
CCDC88C-211ENST00000556726 FBXL16Q8N461 479 aa13.52□□□□□ -0.24
CCDC88C-211ENST00000556726 CCDC155Q8N6L0 562 aa13.52□□□□□ -0.24
CCDC88C-211ENST00000556726 MED15Q96RN5 788 aa13.52□□□□□ -0.24
CCDC88C-211ENST00000556726 POTEB2H3BUK9 544 aa13.52□□□□□ -0.25
CCDC88C-211ENST00000556726 ATP1A1P05023 1023 aaKnown RBP13.52□□□□□ -0.25
CCDC88C-211ENST00000556726 DNM2P50570 870 aa13.52□□□□□ -0.25
CCDC88C-211ENST00000556726 CNNM4Q6P4Q7 775 aa13.52□□□□□ -0.25
CCDC88C-211ENST00000556726 MAATS1Q7Z4T9 603 aa13.52□□□□□ -0.25
CCDC88C-211ENST00000556726 KLHL7Q8IXQ5 586 aa13.52□□□□□ -0.25
CCDC88C-211ENST00000556726 TXLNBQ8N3L3 684 aa13.52□□□□□ -0.25
CCDC88C-211ENST00000556726 RDH13Q8NBN7 331 aa13.52□□□□□ -0.25
CCDC88C-211ENST00000556726 P2RX5Q93086 422 aa13.52□□□□□ -0.25
CCDC88C-211ENST00000556726 MLXIPQ9HAP2 919 aa13.52□□□□□ -0.25
CCDC88C-211ENST00000556726 USP40Q9NVE5 1235 aa13.52□□□□□ -0.25
CCDC88C-211ENST00000556726 AFDNP55196 1824 aaKnown RBP13.52□□□□□ -0.25
CCDC88C-211ENST00000556726 ZNF18P17022 549 aa13.52□□□□□ -0.25
CCDC88C-211ENST00000556726 NHEJ1Q9H9Q4 299 aaPredicted RBP13.52□□□□□ -0.25
CCDC88C-211ENST00000556726 NCK2O43639 380 aa13.51□□□□□ -0.25
CCDC88C-211ENST00000556726 PLEKP08567 350 aaPredicted RBP13.51□□□□□ -0.25
CCDC88C-211ENST00000556726 GUCY2FP51841 1108 aa13.51□□□□□ -0.25
CCDC88C-211ENST00000556726 PNKPQ96T60 521 aa13.51□□□□□ -0.25
CCDC88C-211ENST00000556726 HLA-DOAP06340 250 aa13.51□□□□□ -0.25
CCDC88C-211ENST00000556726 POLR2FP61218 127 aaKnown RBP13.51□□□□□ -0.25
CCDC88C-211ENST00000556726 LLGL1Q15334 1064 aa13.51□□□□□ -0.25
CCDC88C-211ENST00000556726 ZFYVE27Q5T4F4 411 aa13.51□□□□□ -0.25
CCDC88C-211ENST00000556726 ANKRD40Q6AI12 368 aa13.51□□□□□ -0.25
CCDC88C-211ENST00000556726 TRIM31Q9BZY9 425 aa13.51□□□□□ -0.25
CCDC88C-211ENST00000556726 PCDHA6Q9UN73 950 aa13.51□□□□□ -0.25
CCDC88C-211ENST00000556726 KIAA1024Q9UPX6 916 aa13.51□□□□□ -0.25
CCDC88C-211ENST00000556726 PCDHA8Q9Y5H6 950 aa13.51□□□□□ -0.25
CCDC88C-211ENST00000556726 SRCAPQ6ZRS2 3230 aa13.51□□□□□ -0.25
CCDC88C-211ENST00000556726 USP17L15C9J2P7 530 aa13.51□□□□□ -0.25
CCDC88C-211ENST00000556726 USP17L13C9JLJ4 530 aa13.51□□□□□ -0.25
CCDC88C-211ENST00000556726 USP17L11C9JVI0 530 aa13.51□□□□□ -0.25
CCDC88C-211ENST00000556726 USP17L18D6R9N7 530 aa13.51□□□□□ -0.25
CCDC88C-211ENST00000556726 USP17L22D6RA61 530 aa13.51□□□□□ -0.25
CCDC88C-211ENST00000556726 USP17L17D6RBQ6 530 aa13.51□□□□□ -0.25
CCDC88C-211ENST00000556726 USP17L19D6RCP7 530 aa13.51□□□□□ -0.25
CCDC88C-211ENST00000556726 USP17L20D6RJB6 530 aa13.51□□□□□ -0.25
CCDC88C-211ENST00000556726 SASH3O75995 380 aa13.51□□□□□ -0.25
CCDC88C-211ENST00000556726 USP17L24Q0WX57 530 aa13.51□□□□□ -0.25
CCDC88C-211ENST00000556726 KCTD16Q68DU8 428 aa13.51□□□□□ -0.25
CCDC88C-211ENST00000556726 IQCEQ6IPM2 695 aa13.51□□□□□ -0.25
CCDC88C-211ENST00000556726 TTBK2Q6IQ55 1244 aa13.51□□□□□ -0.25
CCDC88C-211ENST00000556726 USP17L6PQ6QN14 398 aa13.51□□□□□ -0.25
CCDC88C-211ENST00000556726 ADAT2Q7Z6V5 191 aaKnown RBP13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms