RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 TMEM63BQ5T3F8 832 aa12.5□□□□□ -0.41
SHMT2-215ENST00000554656 TTBK2Q6IQ55 1244 aa12.5□□□□□ -0.41
SHMT2-215ENST00000554656 RCSD1Q6JBY9 416 aa12.5□□□□□ -0.41
SHMT2-215ENST00000554656 NUP133Q8WUM0 1156 aa12.5□□□□□ -0.41
SHMT2-215ENST00000554656 EVI5LQ96CN4 794 aa12.5□□□□□ -0.41
SHMT2-215ENST00000554656 RNPC3Q96LT9 517 aaKnown RBP12.5□□□□□ -0.41
SHMT2-215ENST00000554656 TRERF1Q96PN7 1200 aa12.5□□□□□ -0.41
SHMT2-215ENST00000554656 PURBQ96QR8 312 aaKnown RBP12.5□□□□□ -0.41
SHMT2-215ENST00000554656 CDX2Q99626 313 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-215ENST00000554656 SEMA6BQ9H3T3 888 aa12.5□□□□□ -0.41
SHMT2-215ENST00000554656 MTMR7Q9Y216 660 aa12.5□□□□□ -0.41
SHMT2-215ENST00000554656 CHD9Q3L8U1 2897 aa12.49□□□□□ -0.41
SHMT2-215ENST00000554656 ELP1O95163 1332 aa12.49□□□□□ -0.41
SHMT2-215ENST00000554656 DCDC2CA8MYV0 355 aa12.49□□□□□ -0.41
SHMT2-215ENST00000554656 BEX3Q00994 111 aa12.49□□□□□ -0.41
SHMT2-215ENST00000554656 FPGSQ05932 587 aa12.49□□□□□ -0.41
SHMT2-215ENST00000554656 TKFCQ3LXA3 575 aa12.49□□□□□ -0.41
SHMT2-215ENST00000554656 FAM126BQ8IXS8 530 aa12.49□□□□□ -0.41
SHMT2-215ENST00000554656 HELLSQ9NRZ9 838 aa12.49□□□□□ -0.41
SHMT2-215ENST00000554656 CYP39A1Q9NYL5 469 aa12.49□□□□□ -0.41
SHMT2-215ENST00000554656 GNEQ9Y223 722 aaKnown RBP12.49□□□□□ -0.41
SHMT2-215ENST00000554656 ARVCFO00192 962 aa12.48□□□□□ -0.41
SHMT2-215ENST00000554656 TIMP1P01033 207 aa12.48□□□□□ -0.41
SHMT2-215ENST00000554656 FGAP02671 866 aa12.48□□□□□ -0.41
SHMT2-215ENST00000554656 SLC16A2P36021 539 aa12.48□□□□□ -0.41
SHMT2-215ENST00000554656 NMIQ13287 307 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-215ENST00000554656 CCDC96Q2M329 555 aa12.48□□□□□ -0.41
SHMT2-215ENST00000554656 GNASQ5JWF2 1037 aa12.48□□□□□ -0.41
SHMT2-215ENST00000554656 BTNL9Q6UXG8 535 aa12.48□□□□□ -0.41
SHMT2-215ENST00000554656 C16orf59Q7L2K0 433 aa12.48□□□□□ -0.41
SHMT2-215ENST00000554656 CHD1LQ86WJ1 897 aa12.48□□□□□ -0.41
SHMT2-215ENST00000554656 FBXO16Q8IX29 292 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-215ENST00000554656 PCSK9Q8NBP7 692 aaKnown RBP12.48□□□□□ -0.41
SHMT2-215ENST00000554656 DCAF4Q8WV16 495 aa12.48□□□□□ -0.41
SHMT2-215ENST00000554656 MYLIPQ8WY64 445 aa12.48□□□□□ -0.41
SHMT2-215ENST00000554656 GLT1D1Q96MS3 346 aa12.48□□□□□ -0.41
SHMT2-215ENST00000554656 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.48□□□□□ -0.418e-8■□□□□ 11.3
SHMT2-215ENST00000554656 RANBP17Q9H2T7 1088 aaKnown RBP12.48□□□□□ -0.41
SHMT2-215ENST00000554656 PDGFCQ9NRA1 345 aa12.48□□□□□ -0.41
SHMT2-215ENST00000554656 CCPG1Q9ULG6 757 aa12.48□□□□□ -0.41
SHMT2-215ENST00000554656 VCANP13611 3396 aa12.47□□□□□ -0.41
SHMT2-215ENST00000554656 GRIN2DO15399 1336 aa12.47□□□□□ -0.41
SHMT2-215ENST00000554656 ZMYM6O95789 1325 aa12.47□□□□□ -0.41
SHMT2-215ENST00000554656 FRMPD2Q68DX3 1309 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-215ENST00000554656 A0A0U1RQG5 324 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-215ENST00000554656 NFIBO00712 420 aa12.47□□□□□ -0.41
SHMT2-215ENST00000554656 CD4P01730 458 aa12.47□□□□□ -0.41
SHMT2-215ENST00000554656 ICAM1P05362 532 aa12.47□□□□□ -0.41
SHMT2-215ENST00000554656 HSPD1P10809 573 aaKnown RBP12.47□□□□□ -0.41
SHMT2-215ENST00000554656 SMPD1P17405 629 aa12.47□□□□□ -0.41
SHMT2-215ENST00000554656 HAND2P61296 217 aa12.47□□□□□ -0.41
SHMT2-215ENST00000554656 TNFAIP2Q03169 654 aa12.47□□□□□ -0.41
SHMT2-215ENST00000554656 MCMDC2Q4G0Z9 681 aa12.47□□□□□ -0.41
SHMT2-215ENST00000554656 RRP12Q5JTH9 1297 aaKnown RBP12.47□□□□□ -0.41
SHMT2-215ENST00000554656 PPP4R3BQ5MIZ7 849 aa12.47□□□□□ -0.41
SHMT2-215ENST00000554656 TAPT1Q6NXT6 567 aa12.47□□□□□ -0.41
SHMT2-215ENST00000554656 CXCL17Q6UXB2 119 aa12.47□□□□□ -0.41
SHMT2-215ENST00000554656 TLK2Q86UE8 772 aa12.47□□□□□ -0.41
SHMT2-215ENST00000554656 TBC1D10CQ8IV04 446 aa12.47□□□□□ -0.41
SHMT2-215ENST00000554656 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.47□□□□□ -0.41
SHMT2-215ENST00000554656 SLC43A3Q8NBI5 491 aa12.47□□□□□ -0.41
SHMT2-215ENST00000554656 MORC4Q8TE76 937 aa12.47□□□□□ -0.41
SHMT2-215ENST00000554656 TMEM47Q9BQJ4 181 aa12.47□□□□□ -0.41
SHMT2-215ENST00000554656 LNPKQ9C0E8 428 aa12.47□□□□□ -0.41
SHMT2-215ENST00000554656 TSHZ2Q9NRE2 1034 aa12.47□□□□□ -0.41
SHMT2-215ENST00000554656 ZBTB47Q9UFB7 747 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-215ENST00000554656 MYO9BQ13459 2157 aa12.47□□□□□ -0.41
SHMT2-215ENST00000554656 MYH6P13533 1939 aa12.47□□□□□ -0.41
SHMT2-215ENST00000554656 UMODL1Q5DID0 1318 aa12.46□□□□□ -0.41
SHMT2-215ENST00000554656 MROH7Q68CQ1 1323 aa12.46□□□□□ -0.41
SHMT2-215ENST00000554656 CCDC171Q6TFL3 1326 aa12.46□□□□□ -0.41
SHMT2-215ENST00000554656 SCN5AQ14524 2016 aa12.46□□□□□ -0.41
SHMT2-215ENST00000554656 ASB14A6NK59 587 aa12.46□□□□□ -0.41
SHMT2-215ENST00000554656 TOP1P11387 765 aaKnown RBP12.46□□□□□ -0.41
SHMT2-215ENST00000554656 CSF2RAP15509 400 aa12.46□□□□□ -0.41
SHMT2-215ENST00000554656 TMEM240Q5SV17 173 aa12.46□□□□□ -0.41
SHMT2-215ENST00000554656 RASIP1Q5U651 963 aa12.46□□□□□ -0.41
SHMT2-215ENST00000554656 SYDE2Q5VT97 1194 aa12.46□□□□□ -0.41
SHMT2-215ENST00000554656 MFSD5Q6N075 450 aa12.46□□□□□ -0.41
SHMT2-215ENST00000554656 NSMFQ6X4W1 530 aa12.46□□□□□ -0.41
SHMT2-215ENST00000554656 EEPD1Q7L9B9 569 aa12.46□□□□□ -0.41
SHMT2-215ENST00000554656 MAFAQ8NHW3 353 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-215ENST00000554656 COL25A1Q9BXS0 654 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-215ENST00000554656 SPC25Q9HBM1 224 aa12.46□□□□□ -0.41
SHMT2-215ENST00000554656 SCN10AQ9Y5Y9 1956 aa12.46□□□□□ -0.41
SHMT2-215ENST00000554656 CHD7Q9P2D1 2997 aa12.45□□□□□ -0.42
SHMT2-215ENST00000554656 NEDD4P46934 1319 aa12.45□□□□□ -0.42
SHMT2-215ENST00000554656 PDHBP11177 359 aa12.45□□□□□ -0.42
SHMT2-215ENST00000554656 DNAJB2P25686 324 aa12.45□□□□□ -0.42
SHMT2-215ENST00000554656 CYP2C18P33260 490 aa12.45□□□□□ -0.42
SHMT2-215ENST00000554656 BAATQ14032 418 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-215ENST00000554656 FSCN1Q16658 493 aaKnown RBP12.45□□□□□ -0.42
SHMT2-215ENST00000554656 SLC30A10Q6XR72 485 aa12.45□□□□□ -0.42
SHMT2-215ENST00000554656 NOL8Q76FK4 1167 aaKnown RBP12.45□□□□□ -0.42
SHMT2-215ENST00000554656 CLEC4DQ8WXI8 215 aa12.45□□□□□ -0.42
SHMT2-215ENST00000554656 VTI1AQ96AJ9 217 aa12.45□□□□□ -0.42
SHMT2-215ENST00000554656 PPP1R12CQ9BZL4 782 aa12.45□□□□□ -0.42
SHMT2-215ENST00000554656 GPCPD1Q9NPB8 672 aa12.45□□□□□ -0.42
SHMT2-215ENST00000554656 TOMM22Q9NS69 142 aa12.45□□□□□ -0.42
SHMT2-215ENST00000554656 TCP11L1Q9NUJ3 509 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms