RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 MRPL44Q9H9J2 332 aaKnown RBP20.27■□□□□ 0.84
VIM-209ENST00000544301 ADGRG1Q9Y653 693 aa20.27■□□□□ 0.84
VIM-209ENST00000544301 TPM1P09493 284 aa20.27■□□□□ 0.84
VIM-209ENST00000544301 PMS1P54277 932 aaKnown RBP20.27■□□□□ 0.84
VIM-209ENST00000544301 EIF6P56537 245 aaKnown RBP20.27■□□□□ 0.84
VIM-209ENST00000544301 FBXO38Q6PIJ6 1188 aa20.27■□□□□ 0.84
VIM-209ENST00000544301 USP40Q9NVE5 1235 aa20.27■□□□□ 0.84
VIM-209ENST00000544301 TECP42680 631 aa20.26■□□□□ 0.83
VIM-209ENST00000544301 STIM1Q13586 685 aa20.26■□□□□ 0.83
VIM-209ENST00000544301 CLEC10AQ8IUN9 316 aa20.26■□□□□ 0.83
VIM-209ENST00000544301 CREBRFQ8IUR6 639 aa20.26■□□□□ 0.83
VIM-209ENST00000544301 COA7Q96BR5 231 aa20.26■□□□□ 0.83
VIM-209ENST00000544301 NPR1P16066 1061 aa20.26■□□□□ 0.83
VIM-209ENST00000544301 DOK7Q18PE1 504 aa20.26■□□□□ 0.83
VIM-209ENST00000544301 KIFC2Q96AC6 838 aa20.26■□□□□ 0.83
VIM-209ENST00000544301 SWAP70Q9UH65 585 aa20.26■□□□□ 0.83
VIM-209ENST00000544301 SERPINB13Q9UIV8 391 aa20.26■□□□□ 0.83
VIM-209ENST00000544301 BRWD3Q6RI45 1802 aa20.25■□□□□ 0.83
VIM-209ENST00000544301 TTLL1O95922 423 aa20.25■□□□□ 0.83
VIM-209ENST00000544301 SCNN1DP51172 638 aa20.25■□□□□ 0.83
VIM-209ENST00000544301 POTEDQ86YR6 584 aa20.25■□□□□ 0.83
VIM-209ENST00000544301 MMTAG2Q9BU76 263 aaKnown RBP20.25■□□□□ 0.83
VIM-209ENST00000544301 TRIM9Q9C026 710 aa20.25■□□□□ 0.83
VIM-209ENST00000544301 GPCPD1Q9NPB8 672 aa20.25■□□□□ 0.83
VIM-209ENST00000544301 RNF225M0QZC1 329 aaPredicted RBP20.24■□□□□ 0.83
VIM-209ENST00000544301 PSMA7O14818 248 aa20.24■□□□□ 0.83
VIM-209ENST00000544301 ADCY7P51828 1080 aa20.24■□□□□ 0.83
VIM-209ENST00000544301 MAP3K9P80192 1104 aa20.24■□□□□ 0.83
VIM-209ENST00000544301 TRIM14Q14142 442 aa20.24■□□□□ 0.83
VIM-209ENST00000544301 C7orf25Q9BPX7 421 aa20.24■□□□□ 0.83
VIM-209ENST00000544301 THAP9Q9H5L6 903 aa20.24■□□□□ 0.83
VIM-209ENST00000544301 OGFRQ9NZT2 677 aa20.24■□□□□ 0.83
VIM-209ENST00000544301 DDX41Q9UJV9 622 aaKnown RBP20.24■□□□□ 0.83
VIM-209ENST00000544301 MYH8P13535 1937 aa20.24■□□□□ 0.83
VIM-209ENST00000544301 SHMT1P34896 483 aa20.24■□□□□ 0.83
VIM-209ENST00000544301 UBXN1Q04323 297 aa20.24■□□□□ 0.83
VIM-209ENST00000544301 TTI2Q6NXR4 508 aa20.24■□□□□ 0.83
VIM-209ENST00000544301 CDC42EP5Q6NZY7 148 aa20.24■□□□□ 0.83
VIM-209ENST00000544301 NLGN1Q8N2Q7 840 aa20.24■□□□□ 0.83
VIM-209ENST00000544301 MTMR9Q96QG7 549 aa20.24■□□□□ 0.83
VIM-209ENST00000544301 CARD6Q9BX69 1037 aa20.24■□□□□ 0.83
VIM-209ENST00000544301 ABHD10Q9NUJ1 306 aa20.24■□□□□ 0.83
VIM-209ENST00000544301 MYO3BQ8WXR4 1341 aa20.24■□□□□ 0.83
VIM-209ENST00000544301 EEF1GP26641 437 aaKnown RBP20.23■□□□□ 0.83
VIM-209ENST00000544301 ZNF543Q08ER8 600 aa20.23■□□□□ 0.83
VIM-209ENST00000544301 MNS1Q8NEH6 495 aa20.23■□□□□ 0.83
VIM-209ENST00000544301 DHTKD1Q96HY7 919 aaPredicted RBP20.23■□□□□ 0.83
VIM-209ENST00000544301 NRXN2Q9P2S2 1712 aa20.23■□□□□ 0.83
VIM-209ENST00000544301 EDIL3O43854 480 aa20.23■□□□□ 0.83
VIM-209ENST00000544301 TADA3O75528 432 aa20.23■□□□□ 0.83
VIM-209ENST00000544301 H2AFXP16104 143 aaPredicted RBP20.23■□□□□ 0.83
VIM-209ENST00000544301 HHIPL2Q6UWX4 724 aa20.23■□□□□ 0.83
VIM-209ENST00000544301 TMTC1Q8IUR5 882 aa20.23■□□□□ 0.83
VIM-209ENST00000544301 TRIM47Q96LD4 638 aa20.23■□□□□ 0.83
VIM-209ENST00000544301 NUP88Q99567 741 aaPredicted RBP20.23■□□□□ 0.83
VIM-209ENST00000544301 JMJD4Q9H9V9 463 aa20.23■□□□□ 0.83
VIM-209ENST00000544301 C10orf71Q711Q0 1435 aa20.22■□□□□ 0.83
VIM-209ENST00000544301 ADAMTSL1Q8N6G6 1762 aa20.22■□□□□ 0.83
VIM-209ENST00000544301 A0A0U1RQJ8 604 aa20.22■□□□□ 0.83
VIM-209ENST00000544301 LGALS16A8MUM7 142 aa20.22■□□□□ 0.83
VIM-209ENST00000544301 ALDH1B1P30837 517 aa20.22■□□□□ 0.83
VIM-209ENST00000544301 TXKP42681 527 aa20.22■□□□□ 0.83
VIM-209ENST00000544301 ERVK-24P63145 666 aa20.22■□□□□ 0.83
VIM-209ENST00000544301 PDE4DQ08499 809 aa20.22■□□□□ 0.83
VIM-209ENST00000544301 CALCRLQ16602 461 aa20.22■□□□□ 0.83
VIM-209ENST00000544301 APOBEC3HQ6NTF7 200 aaKnown RBP20.22■□□□□ 0.83
VIM-209ENST00000544301 COL23A1Q86Y22 540 aaPredicted RBP20.22■□□□□ 0.83
VIM-209ENST00000544301 ADGRF4Q8IZF3 695 aa20.22■□□□□ 0.83
VIM-209ENST00000544301 ATRIPQ8WXE1 791 aa20.22■□□□□ 0.83
VIM-209ENST00000544301 CCDC47Q96A33 483 aaKnown RBP20.22■□□□□ 0.83
VIM-209ENST00000544301 LZTFL1Q9NQ48 299 aa20.22■□□□□ 0.83
VIM-209ENST00000544301 EXOC1Q9NV70 894 aa20.22■□□□□ 0.83
VIM-209ENST00000544301 PNMA6FA0A0J9YX94 578 aa20.21■□□□□ 0.83
VIM-209ENST00000544301 ASIC1P78348 528 aa20.21■□□□□ 0.83
VIM-209ENST00000544301 ARHGAP29Q52LW3 1261 aa20.21■□□□□ 0.83
VIM-209ENST00000544301 SMAP1Q8IYB5 467 aaPredicted RBP20.21■□□□□ 0.83
VIM-209ENST00000544301 MB21D1Q8N884 522 aa20.21■□□□□ 0.83
VIM-209ENST00000544301 NOC3LQ8WTT2 800 aaKnown RBP20.21■□□□□ 0.83
VIM-209ENST00000544301 UBXN4Q92575 508 aa20.21■□□□□ 0.83
VIM-209ENST00000544301 TEKT1Q969V4 418 aa20.21■□□□□ 0.83
VIM-209ENST00000544301 CALML4Q96GE6 196 aa20.21■□□□□ 0.83
VIM-209ENST00000544301 DUSP9Q99956 384 aaKnown RBP20.21■□□□□ 0.83
VIM-209ENST00000544301 IRX2Q9BZI1 471 aaPredicted RBP20.21■□□□□ 0.83
VIM-209ENST00000544301 MRFAP1Q9Y605 127 aa20.21■□□□□ 0.83
VIM-209ENST00000544301 EFCAB8A8MWE9 144 aa20.21■□□□□ 0.83
VIM-209ENST00000544301 SLC37A4O43826 429 aa20.21■□□□□ 0.83
VIM-209ENST00000544301 HMGB2P26583 209 aaKnown RBP20.21■□□□□ 0.83
VIM-209ENST00000544301 FXR2P51116 673 aaKnown RBP eCLIP20.21■□□□□ 0.83
VIM-209ENST00000544301 AMPD3Q01432 767 aa20.21■□□□□ 0.83
VIM-209ENST00000544301 PPP1R18Q6NYC8 613 aa20.21■□□□□ 0.83
VIM-209ENST00000544301 ZNF507Q8TCN5 953 aa20.21■□□□□ 0.83
VIM-209ENST00000544301 PPP1R11O60927 126 aaPredicted RBP20.2■□□□□ 0.82
VIM-209ENST00000544301 TDP2O95551 362 aa20.2■□□□□ 0.82
VIM-209ENST00000544301 HLA-DOAP06340 250 aa20.2■□□□□ 0.82
VIM-209ENST00000544301 KRT9P35527 623 aa20.2■□□□□ 0.82
VIM-209ENST00000544301 STK4Q13043 487 aa20.2■□□□□ 0.82
VIM-209ENST00000544301 TTBK2Q6IQ55 1244 aa20.2■□□□□ 0.82
VIM-209ENST00000544301 CYP26C1Q6V0L0 522 aa20.2■□□□□ 0.82
VIM-209ENST00000544301 RIC8AQ9NPQ8 531 aa20.2■□□□□ 0.82
VIM-209ENST00000544301 MAGEC2Q9UBF1 373 aaPredicted RBP20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms