RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 MORC2Q9Y6X9 1032 aaPredicted RBP8.42□□□□□ -1.06
VPS53-205ENST00000541903 ABCB11O95342 1321 aa8.42□□□□□ -1.06
VPS53-205ENST00000541903 MYH15Q9Y2K3 1946 aa8.42□□□□□ -1.06
VPS53-205ENST00000541903 UNCXA6NJT0 531 aa8.41□□□□□ -1.06
VPS53-205ENST00000541903 SPDYE3A6NKU9 549 aa8.41□□□□□ -1.06
VPS53-205ENST00000541903 USP17L15C9J2P7 530 aa8.41□□□□□ -1.06
VPS53-205ENST00000541903 USP17L13C9JLJ4 530 aa8.41□□□□□ -1.06
VPS53-205ENST00000541903 USP17L11C9JVI0 530 aa8.41□□□□□ -1.06
VPS53-205ENST00000541903 USP17L18D6R9N7 530 aa8.41□□□□□ -1.06
VPS53-205ENST00000541903 USP17L22D6RA61 530 aa8.41□□□□□ -1.06
VPS53-205ENST00000541903 USP17L17D6RBQ6 530 aa8.41□□□□□ -1.06
VPS53-205ENST00000541903 USP17L19D6RCP7 530 aa8.41□□□□□ -1.06
VPS53-205ENST00000541903 USP17L20D6RJB6 530 aa8.41□□□□□ -1.06
VPS53-205ENST00000541903 TRAF5O00463 557 aa8.41□□□□□ -1.06
VPS53-205ENST00000541903 CXCL11O14625 94 aa8.41□□□□□ -1.06
VPS53-205ENST00000541903 CUTAO60888 179 aa8.41□□□□□ -1.06
VPS53-205ENST00000541903 ICAM1P05362 532 aa8.41□□□□□ -1.06
VPS53-205ENST00000541903 MCM7P33993 719 aa8.41□□□□□ -1.06
VPS53-205ENST00000541903 ATP2C1P98194 919 aaPredicted RBP8.41□□□□□ -1.06
VPS53-205ENST00000541903 USP17L24Q0WX57 530 aa8.41□□□□□ -1.06
VPS53-205ENST00000541903 PPIL2Q13356 520 aa8.41□□□□□ -1.06
VPS53-205ENST00000541903 ORC2Q13416 577 aaPredicted RBP8.41□□□□□ -1.06
VPS53-205ENST00000541903 MOB2Q70IA6 237 aa8.41□□□□□ -1.06
VPS53-205ENST00000541903 ZNF526Q8TF50 670 aaPredicted RBP8.41□□□□□ -1.06
VPS53-205ENST00000541903 FERMT2Q96AC1 680 aa8.41□□□□□ -1.06
VPS53-205ENST00000541903 CLMNQ96JQ2 1002 aa8.41□□□□□ -1.06
VPS53-205ENST00000541903 NAP1L4Q99733 375 aaKnown RBP8.41□□□□□ -1.06
VPS53-205ENST00000541903 NMRK2Q9NPI5 230 aa8.41□□□□□ -1.06
VPS53-205ENST00000541903 PAPPA2Q9BXP8 1791 aa8.4□□□□□ -1.06
VPS53-205ENST00000541903 MYPNQ86TC9 1320 aa8.4□□□□□ -1.06
VPS53-205ENST00000541903 GCOM1H8Y6P7 765 aaPredicted RBP8.4□□□□□ -1.06
VPS53-205ENST00000541903 LAD1O00515 517 aa8.4□□□□□ -1.06
VPS53-205ENST00000541903 KINO60870 393 aaKnown RBP8.4□□□□□ -1.06
VPS53-205ENST00000541903 LETM1O95202 739 aaPredicted RBP8.4□□□□□ -1.06
VPS53-205ENST00000541903 FOSP01100 380 aaPredicted RBP8.4□□□□□ -1.06
VPS53-205ENST00000541903 POLR2MP0CAP2 368 aa8.4□□□□□ -1.06
VPS53-205ENST00000541903 TAL1P17542 331 aaPredicted RBP8.4□□□□□ -1.06
VPS53-205ENST00000541903 LIG1P18858 919 aa8.4□□□□□ -1.06
VPS53-205ENST00000541903 PTPREP23469 700 aa8.4□□□□□ -1.06
VPS53-205ENST00000541903 CMA1P23946 247 aa8.4□□□□□ -1.06
VPS53-205ENST00000541903 DSG3P32926 999 aa8.4□□□□□ -1.06
VPS53-205ENST00000541903 CLK2P49760 499 aaKnown RBP8.4□□□□□ -1.06
VPS53-205ENST00000541903 FAM160A1Q05DH4 1040 aa8.4□□□□□ -1.06
VPS53-205ENST00000541903 PTGDRQ13258 359 aa8.4□□□□□ -1.06
VPS53-205ENST00000541903 COG2Q14746 738 aa8.4□□□□□ -1.06
VPS53-205ENST00000541903 LETM2Q2VYF4 491 aa8.4□□□□□ -1.06
VPS53-205ENST00000541903 ZSCAN23Q3MJ62 389 aa8.4□□□□□ -1.06
VPS53-205ENST00000541903 AXDND1Q5T1B0 1012 aaPredicted RBP8.4□□□□□ -1.06
VPS53-205ENST00000541903 LDLRAD1Q5T700 205 aa8.4□□□□□ -1.06
VPS53-205ENST00000541903 USP17L6PQ6QN14 398 aa8.4□□□□□ -1.06
VPS53-205ENST00000541903 GADL1Q6ZQY3 521 aa8.4□□□□□ -1.06
VPS53-205ENST00000541903 CPXCR1Q8N123 301 aa8.4□□□□□ -1.06
VPS53-205ENST00000541903 ZNF579Q8NAF0 562 aaKnown RBP8.4□□□□□ -1.06
VPS53-205ENST00000541903 PROCA1Q8NCQ7 364 aaPredicted RBP8.4□□□□□ -1.06
VPS53-205ENST00000541903 TBCKQ8TEA7 893 aa8.4□□□□□ -1.06
VPS53-205ENST00000541903 CNKSR2Q8WXI2 1034 aa8.4□□□□□ -1.06
VPS53-205ENST00000541903 OPTNQ96CV9 577 aa8.4□□□□□ -1.06
VPS53-205ENST00000541903 ATG4CQ96DT6 458 aa8.4□□□□□ -1.06
VPS53-205ENST00000541903 ANO3Q9BYT9 981 aa8.4□□□□□ -1.06
VPS53-205ENST00000541903 NUP62CLQ9H1M0 184 aa8.4□□□□□ -1.06
VPS53-205ENST00000541903 GOLPH3LQ9H4A5 285 aa8.4□□□□□ -1.06
VPS53-205ENST00000541903 EHMT1Q9H9B1 1298 aa8.4□□□□□ -1.06
VPS53-205ENST00000541903 SLC38A10Q9HBR0 1119 aa8.4□□□□□ -1.06
VPS53-205ENST00000541903 GBA2Q9HCG7 927 aaPredicted RBP8.4□□□□□ -1.06
VPS53-205ENST00000541903 DACT1Q9NYF0 836 aa8.4□□□□□ -1.06
VPS53-205ENST00000541903 FAM13BQ9NYF5 915 aa8.4□□□□□ -1.06
VPS53-205ENST00000541903 TMEM63CQ9P1W3 806 aa8.4□□□□□ -1.06
VPS53-205ENST00000541903 FBXO2Q9UK22 296 aaPredicted RBP8.4□□□□□ -1.06
VPS53-205ENST00000541903 SRPRBQ9Y5M8 271 aaKnown RBP8.4□□□□□ -1.06
VPS53-205ENST00000541903 BAZ2BQ9UIF8 2168 aaKnown RBP8.39□□□□□ -1.07
VPS53-205ENST00000541903 OTOFQ9HC10 1997 aa8.39□□□□□ -1.07
VPS53-205ENST00000541903 ZNF536O15090 1300 aa8.39□□□□□ -1.07
VPS53-205ENST00000541903 A0A0G2JLL6 359 aaPredicted RBP8.39□□□□□ -1.07
VPS53-205ENST00000541903 PIK3CDO00329 1044 aa8.39□□□□□ -1.07
VPS53-205ENST00000541903 VWA5AO00534 786 aa8.39□□□□□ -1.07
VPS53-205ENST00000541903 WNT7AO00755 349 aa8.39□□□□□ -1.07
VPS53-205ENST00000541903 IRF6O14896 467 aa8.39□□□□□ -1.07
VPS53-205ENST00000541903 NEMFO60524 1076 aa8.39□□□□□ -1.07
VPS53-205ENST00000541903 CCNT1O60563 726 aaKnown RBP8.39□□□□□ -1.07
VPS53-205ENST00000541903 CELF2O95319 508 aaKnown RBP8.39□□□□□ -1.07
VPS53-205ENST00000541903 OR52Z1P0C646 297 aa8.39□□□□□ -1.07
VPS53-205ENST00000541903 ALAS1P13196 640 aa8.39□□□□□ -1.07
VPS53-205ENST00000541903 PFKFB1P16118 471 aa8.39□□□□□ -1.07
VPS53-205ENST00000541903 GCFC2P16383 781 aaKnown RBP8.39□□□□□ -1.07
VPS53-205ENST00000541903 OAZ1P54368 228 aa8.39□□□□□ -1.07
VPS53-205ENST00000541903 IRX3P78415 501 aaPredicted RBP8.39□□□□□ -1.07
VPS53-205ENST00000541903 GSE1Q14687 1217 aa8.39□□□□□ -1.07
VPS53-205ENST00000541903 RESP18Q5W5W9 173 aa8.39□□□□□ -1.07
VPS53-205ENST00000541903 ARL6IP4Q66PJ3 421 aaKnown RBP8.39□□□□□ -1.07
VPS53-205ENST00000541903 CHADLQ6NUI6 762 aa8.39□□□□□ -1.07
VPS53-205ENST00000541903 SHC4Q6S5L8 630 aa8.39□□□□□ -1.07
VPS53-205ENST00000541903 CATSPERGQ6ZRH7 1159 aa8.39□□□□□ -1.07
VPS53-205ENST00000541903 PRRT2Q7Z6L0 340 aaPredicted RBP8.39□□□□□ -1.07
VPS53-205ENST00000541903 MCF2L2Q86YR7 1114 aa8.39□□□□□ -1.07
VPS53-205ENST00000541903 C2orf69Q8N8R5 385 aa8.39□□□□□ -1.07
VPS53-205ENST00000541903 SLC10A4Q96EP9 437 aa8.39□□□□□ -1.07
VPS53-205ENST00000541903 AGBL1Q96MI9 1066 aa8.39□□□□□ -1.07
VPS53-205ENST00000541903 CLSTN2Q9H4D0 955 aa8.39□□□□□ -1.07
VPS53-205ENST00000541903 RAVER2Q9HCJ3 691 aaKnown RBP8.39□□□□□ -1.07
VPS53-205ENST00000541903 HOXC10Q9NYD6 342 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms