RNA–Protein interactions for RNA: ENST00000524288.1

SKP1-213, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 1 (best)

Gene SKP1, Length 732 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-213ENST00000524288 ZNF669Q96BR6 464 aaPredicted RBP8.35□□□□□ -1.07
SKP1-213ENST00000524288 SLC26A8Q96RN1 970 aa8.35□□□□□ -1.07
SKP1-213ENST00000524288 APBA2Q99767 749 aa8.35□□□□□ -1.07
SKP1-213ENST00000524288 HDAC8Q9BY41 377 aa8.35□□□□□ -1.07
SKP1-213ENST00000524288 KLHL25Q9H0H3 589 aa8.35□□□□□ -1.07
SKP1-213ENST00000524288 SLC6A17Q9H1V8 727 aa8.35□□□□□ -1.07
SKP1-213ENST00000524288 IFT57Q9NWB7 429 aa8.35□□□□□ -1.07
SKP1-213ENST00000524288 IQCA1LA6NCM1 817 aa8.34□□□□□ -1.07
SKP1-213ENST00000524288 AGRPO00253 132 aa8.34□□□□□ -1.07
SKP1-213ENST00000524288 TBX1O43435 398 aa8.34□□□□□ -1.07
SKP1-213ENST00000524288 ITGAVP06756 1048 aa8.34□□□□□ -1.07
SKP1-213ENST00000524288 ZNF655Q8N720 491 aaPredicted RBP8.34□□□□□ -1.07
SKP1-213ENST00000524288 ZBTB38Q8NAP3 1195 aaPredicted RBP8.34□□□□□ -1.07
SKP1-213ENST00000524288 SMARCC1Q92922 1105 aaPredicted RBP8.34□□□□□ -1.07
SKP1-213ENST00000524288 FEZ1Q99689 392 aa8.34□□□□□ -1.07
SKP1-213ENST00000524288 RNF32Q9H0A6 362 aa8.34□□□□□ -1.07
SKP1-213ENST00000524288 EPN3Q9H201 632 aa8.34□□□□□ -1.07
SKP1-213ENST00000524288 ARHGEF4Q9NR80 690 aa8.34□□□□□ -1.07
SKP1-213ENST00000524288 FBXL21Q9UKT6 434 aa8.34□□□□□ -1.07
SKP1-213ENST00000524288 SHOXO15266 292 aa8.33□□□□□ -1.08
SKP1-213ENST00000524288 MED14OSP0DP75 135 aa8.33□□□□□ -1.08
SKP1-213ENST00000524288 CBX2Q14781 532 aaPredicted RBP8.33□□□□□ -1.08
SKP1-213ENST00000524288 NBPF9Q3BBW0 867 aa8.33□□□□□ -1.08
SKP1-213ENST00000524288 FAM209AQ5JX71 171 aa8.33□□□□□ -1.08
SKP1-213ENST00000524288 SPOCD1Q6ZMY3 1216 aa8.33□□□□□ -1.08
SKP1-213ENST00000524288 ZNF227Q86WZ6 799 aa8.33□□□□□ -1.08
SKP1-213ENST00000524288 ZSCAN18Q8TBC5 510 aaPredicted RBP8.33□□□□□ -1.08
SKP1-213ENST00000524288 LINC01599Q8WXQ3 324 aa8.33□□□□□ -1.08
SKP1-213ENST00000524288 BRF1Q92994 677 aa8.33□□□□□ -1.08
SKP1-213ENST00000524288 EXOC2Q96KP1 924 aa8.33□□□□□ -1.08
SKP1-213ENST00000524288 DNAJC6O75061 913 aa8.32□□□□□ -1.08
SKP1-213ENST00000524288 KRT1P04264 644 aa8.32□□□□□ -1.08
SKP1-213ENST00000524288 TMEM253P0C7T8 217 aa8.32□□□□□ -1.08
SKP1-213ENST00000524288 NAT2P11245 290 aa8.32□□□□□ -1.08
SKP1-213ENST00000524288 CD247P20963 164 aa8.32□□□□□ -1.08
SKP1-213ENST00000524288 CDK11BP21127 795 aaKnown RBP8.32□□□□□ -1.08
SKP1-213ENST00000524288 GLDCP23378 1020 aa8.32□□□□□ -1.08
SKP1-213ENST00000524288 GRIA2P42262 883 aa8.32□□□□□ -1.08
SKP1-213ENST00000524288 PPP2R2AP63151 447 aa8.32□□□□□ -1.08
SKP1-213ENST00000524288 SNW1Q13573 536 aaKnown RBP8.32□□□□□ -1.08
SKP1-213ENST00000524288 AUHQ13825 339 aaKnown RBP8.32□□□□□ -1.08
SKP1-213ENST00000524288 TCEA2Q15560 299 aa8.32□□□□□ -1.08
SKP1-213ENST00000524288 C7orf61Q8IZ16 206 aa8.32□□□□□ -1.08
SKP1-213ENST00000524288 CDC6Q99741 560 aa8.32□□□□□ -1.08
SKP1-213ENST00000524288 GBP3Q9H0R5 595 aa8.32□□□□□ -1.08
SKP1-213ENST00000524288 hCG_2014768A0A024R1R8 64 aa8.31□□□□□ -1.08
SKP1-213ENST00000524288 C1QTNF9P0C862 333 aa8.31□□□□□ -1.08
SKP1-213ENST00000524288 TRHRP34981 398 aaPredicted RBP8.31□□□□□ -1.08
SKP1-213ENST00000524288 ZNF143P52747 638 aaPredicted RBP8.31□□□□□ -1.08
SKP1-213ENST00000524288 PCBP3P57721 371 aaKnown RBP8.31□□□□□ -1.08
SKP1-213ENST00000524288 PPP2R5DQ14738 602 aa8.31□□□□□ -1.08
SKP1-213ENST00000524288 ZNF513Q8N8E2 541 aaPredicted RBP8.31□□□□□ -1.08
SKP1-213ENST00000524288 C19orf44Q9H6X5 657 aa8.31□□□□□ -1.08
SKP1-213ENST00000524288 SPC25Q9HBM1 224 aa8.31□□□□□ -1.08
SKP1-213ENST00000524288 GP6Q9HCN6 339 aa8.31□□□□□ -1.08
SKP1-213ENST00000524288 YBX2Q9Y2T7 364 aaKnown RBP8.31□□□□□ -1.08
SKP1-213ENST00000524288 COL4A3BPQ9Y5P4 624 aa8.31□□□□□ -1.08
SKP1-213ENST00000524288 TRAV20A0A0B4J274 112 aa8.3□□□□□ -1.08
SKP1-213ENST00000524288 ENDOUP21128 410 aaKnown RBP8.3□□□□□ -1.08
SKP1-213ENST00000524288 TIGD5Q53EQ6 642 aa8.3□□□□□ -1.08
SKP1-213ENST00000524288 FBLN7Q53RD9 439 aa8.3□□□□□ -1.08
SKP1-213ENST00000524288 DHX37Q8IY37 1157 aaKnown RBP8.3□□□□□ -1.08
SKP1-213ENST00000524288 USHBP1Q8N6Y0 703 aa8.3□□□□□ -1.08
SKP1-213ENST00000524288 LINC00116Q8NCU8 138 aa8.3□□□□□ -1.08
SKP1-213ENST00000524288 TCTN2Q96GX1 697 aa8.3□□□□□ -1.08
SKP1-213ENST00000524288 SGSM3Q96HU1 749 aa8.3□□□□□ -1.08
SKP1-213ENST00000524288 AARSD1Q9BTE6 412 aaKnown RBP8.3□□□□□ -1.08
SKP1-213ENST00000524288 G6PC3Q9BUM1 346 aa8.3□□□□□ -1.08
SKP1-213ENST00000524288 NOL6Q9H6R4 1146 aaKnown RBP8.3□□□□□ -1.08
SKP1-213ENST00000524288 CD320Q9NPF0 282 aa8.3□□□□□ -1.08
SKP1-213ENST00000524288 MINPP1Q9UNW1 487 aa8.3□□□□□ -1.08
SKP1-213ENST00000524288 MEIS1O00470 390 aa8.29□□□□□ -1.08
SKP1-213ENST00000524288 IRS4O14654 1257 aaPredicted RBP8.29□□□□□ -1.08
SKP1-213ENST00000524288 SIGLEC6O43699 453 aa8.29□□□□□ -1.08
SKP1-213ENST00000524288 PPM1BO75688 479 aa8.29□□□□□ -1.08
SKP1-213ENST00000524288 ITGA4P13612 1032 aa8.29□□□□□ -1.08
SKP1-213ENST00000524288 CFPP27918 469 aa8.29□□□□□ -1.08
SKP1-213ENST00000524288 KIR2DL1P43626 348 aaPredicted RBP8.29□□□□□ -1.08
SKP1-213ENST00000524288 KIR2DL2P43627 348 aaPredicted RBP8.29□□□□□ -1.08
SKP1-213ENST00000524288 HSP90AA2PQ14568 343 aaPredicted RBP8.29□□□□□ -1.08
SKP1-213ENST00000524288 DALRD3Q5D0E6 543 aaKnown RBP8.29□□□□□ -1.08
SKP1-213ENST00000524288 NOL9Q5SY16 702 aaKnown RBP8.29□□□□□ -1.08
SKP1-213ENST00000524288 SIAH1Q8IUQ4 282 aa8.29□□□□□ -1.08
SKP1-213ENST00000524288 LRRC56Q8IYG6 542 aaPredicted RBP8.29□□□□□ -1.08
SKP1-213ENST00000524288 BVESQ8NE79 360 aa8.29□□□□□ -1.08
SKP1-213ENST00000524288 BTN2A2Q8WVV5 523 aa8.29□□□□□ -1.08
SKP1-213ENST00000524288 INTS4Q96HW7 963 aaKnown RBP8.29□□□□□ -1.08
SKP1-213ENST00000524288 PRDM14Q9GZV8 571 aa8.29□□□□□ -1.08
SKP1-213ENST00000524288 GFOD1Q9NXC2 390 aa8.29□□□□□ -1.08
SKP1-213ENST00000524288 PRR13Q9NZ81 148 aa8.29□□□□□ -1.08
SKP1-213ENST00000524288 WHRNQ9P202 907 aa8.29□□□□□ -1.08
SKP1-213ENST00000524288 TCFL5Q9UL49 500 aa8.29□□□□□ -1.08
SKP1-213ENST00000524288 AKT3Q9Y243 479 aa8.29□□□□□ -1.08
SKP1-213ENST00000524288 PCDHB12Q9Y5F1 795 aa8.29□□□□□ -1.08
SKP1-213ENST00000524288 TRBV23-1A0A0A0MS06 115 aa8.28□□□□□ -1.08
SKP1-213ENST00000524288 TCAF2A6NFQ2 919 aa8.28□□□□□ -1.08
SKP1-213ENST00000524288 NOP56O00567 594 aaKnown RBP8.28□□□□□ -1.08
SKP1-213ENST00000524288 PRODHO43272 600 aa8.28□□□□□ -1.08
SKP1-213ENST00000524288 PEX10O60683 326 aa8.28□□□□□ -1.08
SKP1-213ENST00000524288 KCNH1O95259 989 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms