RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 WASH4PA8MWX3 477 aa7.38□□□□□ -1.23
NUP54-218ENST00000515460 CTCFP49711 727 aaPredicted RBP7.38□□□□□ -1.23
NUP54-218ENST00000515460 PDE4BQ07343 736 aa7.38□□□□□ -1.23
NUP54-218ENST00000515460 SLC15A2Q16348 729 aa7.38□□□□□ -1.23
NUP54-218ENST00000515460 FBLN7Q53RD9 439 aa7.38□□□□□ -1.23
NUP54-218ENST00000515460 SPOCD1Q6ZMY3 1216 aa7.38□□□□□ -1.23
NUP54-218ENST00000515460 PTF1AQ7RTS3 328 aa7.38□□□□□ -1.23
NUP54-218ENST00000515460 TTC6Q86TZ1 520 aa7.38□□□□□ -1.23
NUP54-218ENST00000515460 KRTAP4-7Q9BYR0 210 aa7.38□□□□□ -1.23
NUP54-218ENST00000515460 STK32BQ9NY57 414 aa7.38□□□□□ -1.23
NUP54-218ENST00000515460 E9PCH4 1651 aa7.38□□□□□ -1.23
NUP54-218ENST00000515460 THSD7AQ9UPZ6 1657 aa7.38□□□□□ -1.23
NUP54-218ENST00000515460 CTSHP09668 335 aa7.37□□□□□ -1.23
NUP54-218ENST00000515460 TFE3P19532 575 aaPredicted RBP7.37□□□□□ -1.23
NUP54-218ENST00000515460 KIR3DL1P43629 444 aa7.37□□□□□ -1.23
NUP54-218ENST00000515460 FSTL1Q12841 308 aa7.37□□□□□ -1.23
NUP54-218ENST00000515460 HABP4Q5JVS0 413 aaKnown RBP7.37□□□□□ -1.23
NUP54-218ENST00000515460 TMEM87BQ96K49 555 aa7.37□□□□□ -1.23
NUP54-218ENST00000515460 KCNK12Q9HB15 430 aa7.37□□□□□ -1.23
NUP54-218ENST00000515460 TLR6Q9Y2C9 796 aa7.37□□□□□ -1.23
NUP54-218ENST00000515460 ARHGEF28Q8N1W1 1705 aaKnown RBP7.37□□□□□ -1.23
NUP54-218ENST00000515460 GCC2Q8IWJ2 1684 aa7.37□□□□□ -1.23
NUP54-218ENST00000515460 NWD2Q9ULI1 1742 aa7.36□□□□□ -1.23
NUP54-218ENST00000515460 DNAJC25-GNG10A0A024R161 153 aa7.36□□□□□ -1.23
NUP54-218ENST00000515460 HK2P52789 917 aa7.36□□□□□ -1.23
NUP54-218ENST00000515460 ERVFC1P60507 584 aa7.36□□□□□ -1.23
NUP54-218ENST00000515460 RPL6Q02878 288 aaKnown RBP7.36□□□□□ -1.23
NUP54-218ENST00000515460 PWP1Q13610 501 aa7.36□□□□□ -1.23
NUP54-218ENST00000515460 RALGPS1Q5JS13 557 aa7.36□□□□□ -1.23
NUP54-218ENST00000515460 SLC6A19Q695T7 634 aa7.36□□□□□ -1.23
NUP54-218ENST00000515460 CCDC84Q86UT8 332 aaPredicted RBP7.36□□□□□ -1.23
NUP54-218ENST00000515460 CREG2Q8IUH2 290 aa7.36□□□□□ -1.23
NUP54-218ENST00000515460 MRPL41Q8IXM3 137 aaKnown RBP7.36□□□□□ -1.23
NUP54-218ENST00000515460 C16orf71Q8IYS4 520 aaPredicted RBP7.36□□□□□ -1.23
NUP54-218ENST00000515460 BHLHE22Q8NFJ8 381 aaPredicted RBP7.36□□□□□ -1.23
NUP54-218ENST00000515460 CCDC120Q96HB5 630 aa7.36□□□□□ -1.23
NUP54-218ENST00000515460 NSUN3Q9H649 340 aaKnown RBP7.36□□□□□ -1.23
NUP54-218ENST00000515460 BTG4Q9NY30 223 aa7.36□□□□□ -1.23
NUP54-218ENST00000515460 IQGAP3Q86VI3 1631 aa7.36□□□□□ -1.23
NUP54-218ENST00000515460 PXDNQ92626 1479 aa7.36□□□□□ -1.23
NUP54-218ENST00000515460 ROBO2Q9HCK4 1378 aa7.35□□□□□ -1.23
NUP54-218ENST00000515460 SPATA31A5Q5VU36 1347 aa7.35□□□□□ -1.23
NUP54-218ENST00000515460 SPATA31A7Q8IWB4 1347 aa7.35□□□□□ -1.23
NUP54-218ENST00000515460 BPNT1O95861 308 aa7.35□□□□□ -1.23
NUP54-218ENST00000515460 CFPP27918 469 aa7.35□□□□□ -1.23
NUP54-218ENST00000515460 ETV3P41162 512 aa7.35□□□□□ -1.23
NUP54-218ENST00000515460 RELL1Q8IUW5 271 aa7.35□□□□□ -1.23
NUP54-218ENST00000515460 PHC3Q8NDX5 983 aa7.35□□□□□ -1.23
NUP54-218ENST00000515460 ABHD4Q8TB40 342 aa7.35□□□□□ -1.23
NUP54-218ENST00000515460 COX4I2Q96KJ9 171 aa7.35□□□□□ -1.23
NUP54-218ENST00000515460 PPP1R16BQ96T49 567 aa7.35□□□□□ -1.23
NUP54-218ENST00000515460 NRXN3Q9Y4C0 1643 aa7.34□□□□□ -1.23
NUP54-218ENST00000515460 MYO5BQ9ULV0 1848 aa7.34□□□□□ -1.23
NUP54-218ENST00000515460 ZBTB7CA1YPR0 619 aa7.34□□□□□ -1.23
NUP54-218ENST00000515460 F6X3S4 739 aa7.34□□□□□ -1.23
NUP54-218ENST00000515460 ESR1P03372 595 aa7.34□□□□□ -1.23
NUP54-218ENST00000515460 C1QTNF9P0C862 333 aa7.34□□□□□ -1.23
NUP54-218ENST00000515460 RAC2P15153 192 aa7.34□□□□□ -1.23
NUP54-218ENST00000515460 LCE4AQ5TA78 99 aa7.34□□□□□ -1.23
NUP54-218ENST00000515460 MCATQ8IVS2 390 aaKnown RBP7.34□□□□□ -1.23
NUP54-218ENST00000515460 ACSF2Q96CM8 615 aaPredicted RBP7.34□□□□□ -1.23
NUP54-218ENST00000515460 TOX2Q96NM4 488 aa7.34□□□□□ -1.23
NUP54-218ENST00000515460 BCL2L13Q9BXK5 485 aa7.34□□□□□ -1.23
NUP54-218ENST00000515460 ADAMTS10Q9H324 1103 aa7.34□□□□□ -1.23
NUP54-218ENST00000515460 CORINQ9Y5Q5 1042 aa7.34□□□□□ -1.23
NUP54-218ENST00000515460 NAIPQ13075 1403 aa7.34□□□□□ -1.23
NUP54-218ENST00000515460 RPGRIP1LQ68CZ1 1315 aa7.33□□□□□ -1.24
NUP54-218ENST00000515460 UPK3BL1B0FP48 263 aa7.33□□□□□ -1.24
NUP54-218ENST00000515460 UPK3BL2E5RIL1 263 aa7.33□□□□□ -1.24
NUP54-218ENST00000515460 TSPAN15O95858 294 aa7.33□□□□□ -1.24
NUP54-218ENST00000515460 TPP2P29144 1249 aaPredicted RBP7.33□□□□□ -1.24
NUP54-218ENST00000515460 DEKP35659 375 aaKnown RBP7.33□□□□□ -1.24
NUP54-218ENST00000515460 LMNB2Q03252 620 aa7.33□□□□□ -1.24
NUP54-218ENST00000515460 TMPRSS7Q7RTY8 843 aa7.33□□□□□ -1.24
NUP54-218ENST00000515460 CILP2Q8IUL8 1156 aa7.33□□□□□ -1.24
NUP54-218ENST00000515460 DNAJB8Q8NHS0 232 aa7.33□□□□□ -1.24
NUP54-218ENST00000515460 PIWIL2Q8TC59 973 aaKnown RBP7.33□□□□□ -1.24
NUP54-218ENST00000515460 Q96M66 194 aa7.33□□□□□ -1.24
NUP54-218ENST00000515460 DUSP15Q9H1R2 295 aaPredicted RBP7.33□□□□□ -1.24
NUP54-218ENST00000515460 ADAM30Q9UKF2 790 aa7.33□□□□□ -1.24
NUP54-218ENST00000515460 CEP131Q9UPN4 1083 aa7.33□□□□□ -1.24
NUP54-218ENST00000515460 NRAPQ86VF7 1730 aa7.32□□□□□ -1.24
NUP54-218ENST00000515460 NALCNQ8IZF0 1738 aa7.32□□□□□ -1.24
NUP54-218ENST00000515460 NEXMIFQ5QGS0 1516 aa7.32□□□□□ -1.24
NUP54-218ENST00000515460 COL6A3P12111 3177 aa7.32□□□□□ -1.24
NUP54-218ENST00000515460 NFIBO00712 420 aa7.32□□□□□ -1.24
NUP54-218ENST00000515460 PLSCR1O15162 318 aa7.32□□□□□ -1.24
NUP54-218ENST00000515460 HSPA8P11142 646 aaKnown RBP7.32□□□□□ -1.24
NUP54-218ENST00000515460 GBP2P32456 591 aaPredicted RBP7.32□□□□□ -1.24
NUP54-218ENST00000515460 FXR1P51114 621 aaKnown RBP eCLIP7.32□□□□□ -1.24
NUP54-218ENST00000515460 TAGLNQ01995 201 aaKnown RBP7.32□□□□□ -1.24
NUP54-218ENST00000515460 CAMK2GQ13555 558 aaPredicted RBP7.32□□□□□ -1.24
NUP54-218ENST00000515460 WAPLQ7Z5K2 1190 aa7.32□□□□□ -1.24
NUP54-218ENST00000515460 NPM2Q86SE8 214 aaKnown RBP7.32□□□□□ -1.24
NUP54-218ENST00000515460 LRRC56Q8IYG6 542 aaPredicted RBP7.32□□□□□ -1.24
NUP54-218ENST00000515460 FBXO15Q8NCQ5 510 aaPredicted RBP7.32□□□□□ -1.24
NUP54-218ENST00000515460 MYLIPQ8WY64 445 aa7.32□□□□□ -1.24
NUP54-218ENST00000515460 RSRP1Q9BUV0 290 aa7.32□□□□□ -1.24
NUP54-218ENST00000515460 DCP1AQ9NPI6 582 aaPredicted RBP7.32□□□□□ -1.24
NUP54-218ENST00000515460 TMEM59LQ9UK28 342 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms