RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.34□□□□□ -1.392e-11■■□□□ 11.8
NUP54-206ENST00000508465 DHX38Q92620 1227 aaKnown RBP6.34□□□□□ -1.39
NUP54-206ENST00000508465 RNF32Q9H0A6 362 aa6.34□□□□□ -1.39
NUP54-206ENST00000508465 ZCCHC4Q9H5U6 513 aa6.34□□□□□ -1.39
NUP54-206ENST00000508465 PRDM11Q9NQV5 511 aa6.34□□□□□ -1.39
NUP54-206ENST00000508465 GPATCH2Q9NW75 528 aa6.34□□□□□ -1.39
NUP54-206ENST00000508465 TRPM1Q7Z4N2 1603 aa6.34□□□□□ -1.39
NUP54-206ENST00000508465 ADGRB2O60241 1585 aa6.34□□□□□ -1.39
NUP54-206ENST00000508465 ATP7BP35670 1465 aa6.34□□□□□ -1.4
NUP54-206ENST00000508465 POLR3AO14802 1390 aaPredicted RBP6.33□□□□□ -1.4
NUP54-206ENST00000508465 PEX10O60683 326 aa6.33□□□□□ -1.4
NUP54-206ENST00000508465 SEMA7AO75326 666 aa6.33□□□□□ -1.4
NUP54-206ENST00000508465 GCP02774 474 aa6.33□□□□□ -1.4
NUP54-206ENST00000508465 BMP7P18075 431 aa6.33□□□□□ -1.4
NUP54-206ENST00000508465 EVA1CP58658 441 aa6.33□□□□□ -1.4
NUP54-206ENST00000508465 SLC6A19Q695T7 634 aa6.33□□□□□ -1.4
NUP54-206ENST00000508465 TTBK2Q6IQ55 1244 aa6.33□□□□□ -1.4
NUP54-206ENST00000508465 ZSCAN29Q8IWY8 852 aaPredicted RBP6.33□□□□□ -1.4
NUP54-206ENST00000508465 BAHD1Q8TBE0 780 aaPredicted RBP6.33□□□□□ -1.4
NUP54-206ENST00000508465 GAL3ST3Q96A11 431 aa6.33□□□□□ -1.4
NUP54-206ENST00000508465 TESK2Q96S53 571 aa6.33□□□□□ -1.4
NUP54-206ENST00000508465 C12orf49Q9H741 205 aa6.33□□□□□ -1.4
NUP54-206ENST00000508465 KIF1AQ12756 1690 aa6.33□□□□□ -1.4
NUP54-206ENST00000508465 KIAA0232Q92628 1395 aa6.32□□□□□ -1.4
NUP54-206ENST00000508465 TTC21BQ7Z4L5 1316 aa6.32□□□□□ -1.4
NUP54-206ENST00000508465 FITM1A5D6W6 292 aa6.32□□□□□ -1.4
NUP54-206ENST00000508465 PGRP06401 933 aa6.32□□□□□ -1.4
NUP54-206ENST00000508465 TRHRP34981 398 aaPredicted RBP6.32□□□□□ -1.4
NUP54-206ENST00000508465 DLG4P78352 724 aa6.32□□□□□ -1.4
NUP54-206ENST00000508465 VPS72Q15906 364 aa6.32□□□□□ -1.4
NUP54-206ENST00000508465 SPPL2CQ8IUH8 684 aa6.32□□□□□ -1.4
NUP54-206ENST00000508465 MRPL41Q8IXM3 137 aaKnown RBP6.32□□□□□ -1.4
NUP54-206ENST00000508465 C20orf173Q96LM9 149 aa6.32□□□□□ -1.4
NUP54-206ENST00000508465 KRTAP9-3Q9BYQ3 159 aa6.32□□□□□ -1.4
NUP54-206ENST00000508465 DUSP15Q9H1R2 295 aaPredicted RBP6.32□□□□□ -1.4
NUP54-206ENST00000508465 CWC22Q9HCG8 908 aaKnown RBP6.32□□□□□ -1.4
NUP54-206ENST00000508465 USP35Q9P2H5 1018 aa6.32□□□□□ -1.4
NUP54-206ENST00000508465 DUSP13Q9UII6 198 aa6.32□□□□□ -1.4
NUP54-206ENST00000508465 KCNH3Q9ULD8 1083 aa6.32□□□□□ -1.4
NUP54-206ENST00000508465 TTF2Q9UNY4 1162 aaKnown RBP6.32□□□□□ -1.4
NUP54-206ENST00000508465 QRICH2Q9H0J4 1663 aa6.32□□□□□ -1.4
NUP54-206ENST00000508465 ATRNO75882 1429 aa6.32□□□□□ -1.4
NUP54-206ENST00000508465 COL22A1Q8NFW1 1626 aaPredicted RBP6.32□□□□□ -1.4
NUP54-206ENST00000508465 EP400Q96L91 3159 aa6.31□□□□□ -1.4
NUP54-206ENST00000508465 RALGAPBQ86X10 1494 aa6.31□□□□□ -1.4
NUP54-206ENST00000508465 USP17L7P0C7H9 530 aa6.31□□□□□ -1.4
NUP54-206ENST00000508465 RPS26P62854 115 aaKnown RBP6.31□□□□□ -1.4
NUP54-206ENST00000508465 EGR3Q06889 387 aa6.31□□□□□ -1.4
NUP54-206ENST00000508465 PDE4BQ07343 736 aa6.31□□□□□ -1.4
NUP54-206ENST00000508465 ZNF385BQ569K4 471 aa6.31□□□□□ -1.4
NUP54-206ENST00000508465 TCERG1LQ5VWI1 586 aa6.31□□□□□ -1.4
NUP54-206ENST00000508465 ZNF605Q86T29 641 aa6.31□□□□□ -1.4
NUP54-206ENST00000508465 NME9Q86XW9 330 aa6.31□□□□□ -1.4
NUP54-206ENST00000508465 POLR3GLQ9BT43 218 aa6.31□□□□□ -1.4
NUP54-206ENST00000508465 MCOLN1Q9GZU1 580 aa6.31□□□□□ -1.4
NUP54-206ENST00000508465 CNOT6Q9ULM6 557 aaKnown RBP6.31□□□□□ -1.4
NUP54-206ENST00000508465 CEP131Q9UPN4 1083 aa6.31□□□□□ -1.4
NUP54-206ENST00000508465 KTN1Q86UP2 1357 aaKnown RBP6.31□□□□□ -1.4
NUP54-206ENST00000508465 TRPM3Q9HCF6 1732 aaPredicted RBP6.3□□□□□ -1.4
NUP54-206ENST00000508465 WASH4PA8MWX3 477 aa6.3□□□□□ -1.4
NUP54-206ENST00000508465 GFRA2O00451 464 aa6.3□□□□□ -1.4
NUP54-206ENST00000508465 FBLN1P23142 703 aa6.3□□□□□ -1.4
NUP54-206ENST00000508465 CDK8P49336 464 aa6.3□□□□□ -1.4
NUP54-206ENST00000508465 SNX17Q15036 470 aa6.3□□□□□ -1.4
NUP54-206ENST00000508465 NR0B2Q15466 257 aa6.3□□□□□ -1.4
NUP54-206ENST00000508465 GAB4Q2WGN9 574 aa6.3□□□□□ -1.4
NUP54-206ENST00000508465 DIEXFQ68CQ4 756 aaKnown RBP6.3□□□□□ -1.4
NUP54-206ENST00000508465 HDGFL2Q7Z4V5 671 aaPredicted RBP6.3□□□□□ -1.4
NUP54-206ENST00000508465 TMEM151BQ8IW70 566 aa6.3□□□□□ -1.4
NUP54-206ENST00000508465 TMEM87BQ96K49 555 aa6.3□□□□□ -1.4
NUP54-206ENST00000508465 Q96M66 194 aa6.3□□□□□ -1.4
NUP54-206ENST00000508465 FRMD6Q96NE9 622 aa6.3□□□□□ -1.4
NUP54-206ENST00000508465 DPH2Q9BQC3 489 aaPredicted RBP6.3□□□□□ -1.4
NUP54-206ENST00000508465 GPR62Q9BZJ7 368 aa6.3□□□□□ -1.4
NUP54-206ENST00000508465 TJP2Q9UDY2 1190 aa6.3□□□□□ -1.4
NUP54-206ENST00000508465 RGS12O14924 1447 aa6.3□□□□□ -1.4
NUP54-206ENST00000508465 USP47Q96K76 1375 aa6.3□□□□□ -1.4
NUP54-206ENST00000508465 SLIT2O94813 1529 aa6.3□□□□□ -1.4
NUP54-206ENST00000508465 CLSPNQ9HAW4 1339 aa6.29□□□□□ -1.4
NUP54-206ENST00000508465 TEX51A0A1B0GUA7 166 aa6.29□□□□□ -1.4
NUP54-206ENST00000508465 RFXAPO00287 272 aa6.29□□□□□ -1.4
NUP54-206ENST00000508465 ZGLP1P0C6A0 271 aa6.29□□□□□ -1.4
NUP54-206ENST00000508465 HSPA5P11021 654 aaKnown RBP6.29□□□□□ -1.4
NUP54-206ENST00000508465 USP6P35125 1406 aa6.29□□□□□ -1.4
NUP54-206ENST00000508465 PDE6BP35913 854 aa6.29□□□□□ -1.4
NUP54-206ENST00000508465 TMF1P82094 1093 aa6.29□□□□□ -1.4
NUP54-206ENST00000508465 FMR1Q06787 632 aaKnown RBP eCLIP6.29□□□□□ -1.4
NUP54-206ENST00000508465 TSPYL5Q86VY4 417 aaPredicted RBP6.29□□□□□ -1.4
NUP54-206ENST00000508465 MCATQ8IVS2 390 aaKnown RBP6.29□□□□□ -1.4
NUP54-206ENST00000508465 INTS4Q96HW7 963 aaKnown RBP6.29□□□□□ -1.4
NUP54-206ENST00000508465 ZNF552Q9H707 407 aaPredicted RBP6.29□□□□□ -1.4
NUP54-206ENST00000508465 TERF2IPQ9NYB0 399 aa6.29□□□□□ -1.4
NUP54-206ENST00000508465 GNEQ9Y223 722 aaKnown RBP6.29□□□□□ -1.4
NUP54-206ENST00000508465 ALS2Q96Q42 1657 aa6.29□□□□□ -1.4
NUP54-206ENST00000508465 USP19O94966 1318 aa6.28□□□□□ -1.4
NUP54-206ENST00000508465 SPATA31A5Q5VU36 1347 aa6.28□□□□□ -1.4
NUP54-206ENST00000508465 SPATA31A7Q8IWB4 1347 aa6.28□□□□□ -1.4
NUP54-206ENST00000508465 SSH2Q76I76 1423 aa6.28□□□□□ -1.4
NUP54-206ENST00000508465 FOXD2O60548 495 aaPredicted RBP6.28□□□□□ -1.4
NUP54-206ENST00000508465 CHRNEQ04844 493 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms