RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 MROH8Q9H579 483 aa9.49□□□□□ -0.89
LIMCH1-206ENST00000505705 RBM27Q9P2N5 1060 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-206ENST00000505705 FBXO40Q9UH90 709 aa9.49□□□□□ -0.89
LIMCH1-206ENST00000505705 ZNF214Q9UL59 606 aaPredicted RBP9.49□□□□□ -0.89
LIMCH1-206ENST00000505705 MRPL11Q9Y3B7 192 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-206ENST00000505705 ABCB11O95342 1321 aa9.49□□□□□ -0.89
LIMCH1-206ENST00000505705 ADGRA2Q96PE1 1338 aa9.49□□□□□ -0.89
LIMCH1-206ENST00000505705 PTPDC1A2A3K4 754 aa9.48□□□□□ -0.89
LIMCH1-206ENST00000505705 ATP2A1O14983 1001 aa9.48□□□□□ -0.89
LIMCH1-206ENST00000505705 CD2BP2O95400 341 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-206ENST00000505705 HSPA8P11142 646 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-206ENST00000505705 FCER1AP12319 257 aa9.48□□□□□ -0.89
LIMCH1-206ENST00000505705 XBP1P17861 261 aa9.48□□□□□ -0.89
LIMCH1-206ENST00000505705 KCTD2Q14681 263 aa9.48□□□□□ -0.89
LIMCH1-206ENST00000505705 POTEEQ6S8J3 1075 aa9.48□□□□□ -0.89
LIMCH1-206ENST00000505705 NSMFQ6X4W1 530 aa9.48□□□□□ -0.89
LIMCH1-206ENST00000505705 GPR142Q7Z601 462 aa9.48□□□□□ -0.89
LIMCH1-206ENST00000505705 FAM184AQ8NB25 1140 aa9.48□□□□□ -0.89
LIMCH1-206ENST00000505705 SHCBP1Q8NEM2 672 aa9.48□□□□□ -0.89
LIMCH1-206ENST00000505705 CHST13Q8NET6 341 aa9.48□□□□□ -0.89
LIMCH1-206ENST00000505705 WASF1Q92558 559 aa9.48□□□□□ -0.89
LIMCH1-206ENST00000505705 MMP19Q99542 508 aa9.48□□□□□ -0.89
LIMCH1-206ENST00000505705 RNF26Q9BY78 433 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-206ENST00000505705 ARHGAP39Q9C0H5 1083 aa9.48□□□□□ -0.89
LIMCH1-206ENST00000505705 PORCNQ9H237 461 aa9.48□□□□□ -0.89
LIMCH1-206ENST00000505705 ACAD9Q9H845 621 aa9.48□□□□□ -0.89
LIMCH1-206ENST00000505705 RNF146Q9NTX7 359 aa9.48□□□□□ -0.89
LIMCH1-206ENST00000505705 RIPK3Q9Y572 518 aa9.48□□□□□ -0.89
LIMCH1-206ENST00000505705 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-206ENST00000505705 ZNF536O15090 1300 aa9.48□□□□□ -0.89
LIMCH1-206ENST00000505705 CNTNAP5Q8WYK1 1306 aa9.48□□□□□ -0.89
LIMCH1-206ENST00000505705 NID2Q14112 1375 aa9.48□□□□□ -0.89
LIMCH1-206ENST00000505705 K7ELQ4 463 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-206ENST00000505705 STRNO43815 780 aa9.47□□□□□ -0.89
LIMCH1-206ENST00000505705 DTNBO60941 627 aa9.47□□□□□ -0.89
LIMCH1-206ENST00000505705 DEXIO95424 95 aa9.47□□□□□ -0.89
LIMCH1-206ENST00000505705 SCG2P13521 617 aa9.47□□□□□ -0.89
LIMCH1-206ENST00000505705 TAL1P17542 331 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-206ENST00000505705 NAPAP54920 295 aa9.47□□□□□ -0.89
LIMCH1-206ENST00000505705 NTRK3Q16288 839 aa9.47□□□□□ -0.89
LIMCH1-206ENST00000505705 SLC35G1Q2M3R5 365 aa9.47□□□□□ -0.89
LIMCH1-206ENST00000505705 NOM1Q5C9Z4 860 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-206ENST00000505705 MUM1L1Q5H9M0 696 aa9.47□□□□□ -0.89
LIMCH1-206ENST00000505705 DPP9Q86TI2 863 aa9.47□□□□□ -0.89
LIMCH1-206ENST00000505705 MCF2L2Q86YR7 1114 aa9.47□□□□□ -0.89
LIMCH1-206ENST00000505705 CCDC12Q8WUD4 166 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-206ENST00000505705 GPKOWQ92917 476 aaPredicted RBP eCLIP9.47□□□□□ -0.89
LIMCH1-206ENST00000505705 CUL5Q93034 780 aa9.47□□□□□ -0.89
LIMCH1-206ENST00000505705 SNX21Q969T3 373 aa9.47□□□□□ -0.89
LIMCH1-206ENST00000505705 MTMR8Q96EF0 704 aa9.47□□□□□ -0.89
LIMCH1-206ENST00000505705 NUDT12Q9BQG2 462 aa9.47□□□□□ -0.89
LIMCH1-206ENST00000505705 SLC5A4Q9NY91 659 aa9.47□□□□□ -0.89
LIMCH1-206ENST00000505705 ORC3Q9UBD5 711 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-206ENST00000505705 TRIM17Q9Y577 477 aa9.47□□□□□ -0.89
LIMCH1-206ENST00000505705 hCG_1984214I3L0E3 225 aa9.46□□□□□ -0.9
LIMCH1-206ENST00000505705 PPP1R11O60927 126 aaPredicted RBP9.46□□□□□ -0.9
LIMCH1-206ENST00000505705 CFBP00751 764 aa9.46□□□□□ -0.9
LIMCH1-206ENST00000505705 GNRH1P01148 92 aa9.46□□□□□ -0.9
LIMCH1-206ENST00000505705 CALML3P27482 149 aa9.46□□□□□ -0.9
LIMCH1-206ENST00000505705 NLRP5P59047 1200 aa9.46□□□□□ -0.9
LIMCH1-206ENST00000505705 HMGN5P82970 282 aaKnown RBP9.46□□□□□ -0.9
LIMCH1-206ENST00000505705 FUT2Q10981 343 aa9.46□□□□□ -0.9
LIMCH1-206ENST00000505705 TRIM29Q14134 588 aa9.46□□□□□ -0.9
LIMCH1-206ENST00000505705 BECN1Q14457 450 aa9.46□□□□□ -0.9
LIMCH1-206ENST00000505705 PFKFB3Q16875 520 aaPredicted RBP9.46□□□□□ -0.9
LIMCH1-206ENST00000505705 WWC2Q6AWC2 1192 aa9.46□□□□□ -0.9
LIMCH1-206ENST00000505705 RNF207Q6ZRF8 634 aa9.46□□□□□ -0.9
LIMCH1-206ENST00000505705 ZNF713Q8N859 430 aaPredicted RBP9.46□□□□□ -0.9
LIMCH1-206ENST00000505705 NSUN7Q8NE18 718 aaKnown RBP9.46□□□□□ -0.9
LIMCH1-206ENST00000505705 SMARCC2Q8TAQ2 1214 aa9.46□□□□□ -0.9
LIMCH1-206ENST00000505705 RAET1EQ8TD07 263 aa9.46□□□□□ -0.9
LIMCH1-206ENST00000505705 LLPHQ9BRT6 129 aaKnown RBP9.46□□□□□ -0.9
LIMCH1-206ENST00000505705 DAXXQ9UER7 740 aaPredicted RBP9.46□□□□□ -0.9
LIMCH1-206ENST00000505705 SMC3Q9UQE7 1217 aa9.46□□□□□ -0.9
LIMCH1-206ENST00000505705 SMCO2A6NFE2 343 aa9.45□□□□□ -0.9
LIMCH1-206ENST00000505705 SLC15A5A6NIM6 579 aa9.45□□□□□ -0.9
LIMCH1-206ENST00000505705 POTEB2H3BUK9 544 aa9.45□□□□□ -0.9
LIMCH1-206ENST00000505705 GCOM1H8Y6P7 765 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-206ENST00000505705 NFIBO00712 420 aa9.45□□□□□ -0.9
LIMCH1-206ENST00000505705 JAK2O60674 1132 aa9.45□□□□□ -0.9
LIMCH1-206ENST00000505705 CTDNEP1O95476 244 aa9.45□□□□□ -0.9
LIMCH1-206ENST00000505705 PRR29P0C7W0 189 aa9.45□□□□□ -0.9
LIMCH1-206ENST00000505705 POLR2MP0CAP2 368 aa9.45□□□□□ -0.9
LIMCH1-206ENST00000505705 CYP2B6P20813 491 aa9.45□□□□□ -0.9
LIMCH1-206ENST00000505705 PTPREP23469 700 aa9.45□□□□□ -0.9
LIMCH1-206ENST00000505705 ADORA2AP29274 412 aa9.45□□□□□ -0.9
LIMCH1-206ENST00000505705 RGS2P41220 211 aa9.45□□□□□ -0.9
LIMCH1-206ENST00000505705 FOSBP53539 338 aa9.45□□□□□ -0.9
LIMCH1-206ENST00000505705 PKN1Q16512 942 aa9.45□□□□□ -0.9
LIMCH1-206ENST00000505705 CCDC148Q8NFR7 591 aa9.45□□□□□ -0.9
LIMCH1-206ENST00000505705 SOCS4Q8WXH5 440 aa9.45□□□□□ -0.9
LIMCH1-206ENST00000505705 TRIM47Q96LD4 638 aa9.45□□□□□ -0.9
LIMCH1-206ENST00000505705 ALG1Q9BT22 464 aa9.45□□□□□ -0.9
LIMCH1-206ENST00000505705 PSTPIP2Q9H939 334 aa9.45□□□□□ -0.9
LIMCH1-206ENST00000505705 C6orf50Q9HD87 102 aa9.45□□□□□ -0.9
LIMCH1-206ENST00000505705 BARHL2Q9NY43 387 aa9.45□□□□□ -0.9
LIMCH1-206ENST00000505705 VPS54Q9P1Q0 977 aa9.45□□□□□ -0.9
LIMCH1-206ENST00000505705 KIF3AQ9Y496 699 aa9.45□□□□□ -0.9
LIMCH1-206ENST00000505705 PFASO15067 1338 aa9.45□□□□□ -0.9
LIMCH1-206ENST00000505705 COL11A1P12107 1806 aaPredicted RBP9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms