RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 NT5DC4Q86YG4 428 aa5.36□□□□□ -1.55
CPSF3-205ENST00000489629 NAT16Q8N8M0 369 aa5.36□□□□□ -1.55
CPSF3-205ENST00000489629 MARCH10Q8NA82 808 aaPredicted RBP5.36□□□□□ -1.55
CPSF3-205ENST00000489629 NLGN2Q8NFZ4 835 aa5.36□□□□□ -1.55
CPSF3-205ENST00000489629 KLHL6Q8WZ60 621 aa5.36□□□□□ -1.55
CPSF3-205ENST00000489629 MRRFQ96E11 262 aaKnown RBP5.36□□□□□ -1.55
CPSF3-205ENST00000489629 SHDQ96IW2 340 aa5.36□□□□□ -1.55
CPSF3-205ENST00000489629 PTCHD1Q96NR3 888 aa5.36□□□□□ -1.55
CPSF3-205ENST00000489629 KCNC2Q96PR1 638 aa5.36□□□□□ -1.55
CPSF3-205ENST00000489629 CRBNQ96SW2 442 aa5.36□□□□□ -1.55
CPSF3-205ENST00000489629 PHAXQ9H814 394 aaKnown RBP5.36□□□□□ -1.55
CPSF3-205ENST00000489629 WHRNQ9P202 907 aa5.36□□□□□ -1.55
CPSF3-205ENST00000489629 KIAA1522Q9P206 1035 aaPredicted RBP5.36□□□□□ -1.55
CPSF3-205ENST00000489629 PCDHA5Q9Y5H7 936 aa5.36□□□□□ -1.55
CPSF3-205ENST00000489629 SLC12A7Q9Y666 1083 aa5.36□□□□□ -1.55
CPSF3-205ENST00000489629 IRS2Q9Y4H2 1338 aa5.36□□□□□ -1.55
CPSF3-205ENST00000489629 UNCXA6NJT0 531 aa5.35□□□□□ -1.55
CPSF3-205ENST00000489629 SRGAP3O43295 1099 aa5.35□□□□□ -1.55
CPSF3-205ENST00000489629 MAPKAPK2P49137 400 aa5.35□□□□□ -1.55
CPSF3-205ENST00000489629 POU4F1Q01851 419 aa5.35□□□□□ -1.55
CPSF3-205ENST00000489629 NR1I3Q14994 352 aa5.35□□□□□ -1.55
CPSF3-205ENST00000489629 PLEKHN1Q494U1 663 aaPredicted RBP5.35□□□□□ -1.55
CPSF3-205ENST00000489629 C9orf131Q5VYM1 1079 aa5.35□□□□□ -1.55
CPSF3-205ENST00000489629 TMEM151BQ8IW70 566 aa5.35□□□□□ -1.55
CPSF3-205ENST00000489629 ZDHHC15Q96MV8 337 aa5.35□□□□□ -1.55
CPSF3-205ENST00000489629 PARD6AQ9NPB6 346 aa5.35□□□□□ -1.55
CPSF3-205ENST00000489629 SUSD2Q9UGT4 822 aa5.35□□□□□ -1.55
CPSF3-205ENST00000489629 PCDHB10Q9UN67 800 aa5.35□□□□□ -1.55
CPSF3-205ENST00000489629 AURKAO14965 403 aa5.34□□□□□ -1.55
CPSF3-205ENST00000489629 TRIM13O60858 407 aa5.34□□□□□ -1.55
CPSF3-205ENST00000489629 CD3EP07766 207 aa5.34□□□□□ -1.55
CPSF3-205ENST00000489629 DBHP09172 617 aa5.34□□□□□ -1.55
CPSF3-205ENST00000489629 BMP7P18075 431 aa5.34□□□□□ -1.55
CPSF3-205ENST00000489629 FBLN1P23142 703 aa5.34□□□□□ -1.55
CPSF3-205ENST00000489629 CORO7P57737 925 aa5.34□□□□□ -1.55
CPSF3-205ENST00000489629 PPP2R5DQ14738 602 aa5.34□□□□□ -1.55
CPSF3-205ENST00000489629 RCSD1Q6JBY9 416 aa5.34□□□□□ -1.55
CPSF3-205ENST00000489629 FAM129CQ86XR2 697 aa5.34□□□□□ -1.55
CPSF3-205ENST00000489629 JAMLQ86YT9 394 aa5.34□□□□□ -1.55
CPSF3-205ENST00000489629 ZNF513Q8N8E2 541 aaPredicted RBP5.34□□□□□ -1.55
CPSF3-205ENST00000489629 PDLIM7Q9NR12 457 aa5.34□□□□□ -1.55
CPSF3-205ENST00000489629 VAMP4O75379 141 aa5.33□□□□□ -1.56
CPSF3-205ENST00000489629 TBC1D8O95759 1140 aa5.33□□□□□ -1.56
CPSF3-205ENST00000489629 CYBBP04839 570 aa5.33□□□□□ -1.56
CPSF3-205ENST00000489629 EPHX1P07099 455 aa5.33□□□□□ -1.56
CPSF3-205ENST00000489629 IGFBP6P24592 240 aaPredicted RBP5.33□□□□□ -1.56
CPSF3-205ENST00000489629 NASPP49321 788 aaPredicted RBP5.33□□□□□ -1.56
CPSF3-205ENST00000489629 AFF3P51826 1226 aaKnown RBP5.33□□□□□ -1.56
CPSF3-205ENST00000489629 NCKAP1LP55160 1127 aa5.33□□□□□ -1.56
CPSF3-205ENST00000489629 CASP7P55210 303 aa5.33□□□□□ -1.56
CPSF3-205ENST00000489629 SLC7A5Q01650 507 aa5.33□□□□□ -1.56
CPSF3-205ENST00000489629 HEATR6Q6AI08 1181 aaKnown RBP5.33□□□□□ -1.56
CPSF3-205ENST00000489629 CNKSR3Q6P9H4 555 aa5.33□□□□□ -1.56
CPSF3-205ENST00000489629 ZC3H14Q6PJT7 736 aaKnown RBP5.33□□□□□ -1.56
CPSF3-205ENST00000489629 PAQR3Q6TCH7 311 aa5.33□□□□□ -1.56
CPSF3-205ENST00000489629 ARHGEF39Q8N4T4 335 aa5.33□□□□□ -1.56
CPSF3-205ENST00000489629 ADCY4Q8NFM4 1077 aa5.33□□□□□ -1.56
CPSF3-205ENST00000489629 RCC1LQ96I51 464 aaKnown RBP5.33□□□□□ -1.56
CPSF3-205ENST00000489629 A0A1W2PQ27 194 aa5.32□□□□□ -1.56
CPSF3-205ENST00000489629 A0A1W2PQ64 194 aa5.32□□□□□ -1.56
CPSF3-205ENST00000489629 A0A1W2PQC6 194 aa5.32□□□□□ -1.56
CPSF3-205ENST00000489629 A0A1W2PQD8 194 aa5.32□□□□□ -1.56
CPSF3-205ENST00000489629 BUB1BO60566 1050 aaPredicted RBP5.32□□□□□ -1.56
CPSF3-205ENST00000489629 L1CAMP32004 1257 aa5.32□□□□□ -1.56
CPSF3-205ENST00000489629 HOMEZQ8IX15 550 aa5.32□□□□□ -1.56
CPSF3-205ENST00000489629 FAM169BQ8N8A8 192 aa5.32□□□□□ -1.56
CPSF3-205ENST00000489629 SEC16BQ96JE7 1060 aa5.32□□□□□ -1.56
CPSF3-205ENST00000489629 FGD4Q96M96 766 aa5.32□□□□□ -1.56
CPSF3-205ENST00000489629 TGIF2Q9GZN2 237 aa5.32□□□□□ -1.56
CPSF3-205ENST00000489629 GBP3Q9H0R5 595 aa5.32□□□□□ -1.56
CPSF3-205ENST00000489629 ZCCHC4Q9H5U6 513 aa5.32□□□□□ -1.56
CPSF3-205ENST00000489629 CGGBP1Q9UFW8 167 aaPredicted RBP5.32□□□□□ -1.56
CPSF3-205ENST00000489629 PLA2G2DQ9UNK4 145 aa5.32□□□□□ -1.56
CPSF3-205ENST00000489629 HCFC2Q9Y5Z7 792 aa5.32□□□□□ -1.56
CPSF3-205ENST00000489629 NCANO14594 1321 aa5.31□□□□□ -1.56
CPSF3-205ENST00000489629 A0A0G2JLL6 359 aaPredicted RBP5.31□□□□□ -1.56
CPSF3-205ENST00000489629 PPP1R11O60927 126 aaPredicted RBP5.31□□□□□ -1.56
CPSF3-205ENST00000489629 CTSWP56202 376 aa5.31□□□□□ -1.56
CPSF3-205ENST00000489629 ZNF200P98182 395 aaPredicted RBP5.31□□□□□ -1.56
CPSF3-205ENST00000489629 CAP1Q01518 475 aa5.31□□□□□ -1.56
CPSF3-205ENST00000489629 GRB10Q13322 594 aa5.31□□□□□ -1.56
CPSF3-205ENST00000489629 EEF1DP3Q658K8 133 aa5.31□□□□□ -1.56
CPSF3-205ENST00000489629 BICRALQ6AI39 1079 aa5.31□□□□□ -1.56
CPSF3-205ENST00000489629 XYLT2Q9H1B5 865 aa5.31□□□□□ -1.56
CPSF3-205ENST00000489629 ACBD3Q9H3P7 528 aa5.31□□□□□ -1.56
CPSF3-205ENST00000489629 B8ZZF3 427 aa5.3□□□□□ -1.56
CPSF3-205ENST00000489629 STXBP3O00186 592 aa5.3□□□□□ -1.56
CPSF3-205ENST00000489629 PRRG2O14669 202 aa5.3□□□□□ -1.56
CPSF3-205ENST00000489629 PPM1BO75688 479 aa5.3□□□□□ -1.56
CPSF3-205ENST00000489629 GLI4P10075 376 aa5.3□□□□□ -1.56
CPSF3-205ENST00000489629 TACR1P25103 407 aa5.3□□□□□ -1.56
CPSF3-205ENST00000489629 TRIM26Q12899 539 aaPredicted RBP5.3□□□□□ -1.56
CPSF3-205ENST00000489629 VMACQ2NL98 169 aa5.3□□□□□ -1.56
CPSF3-205ENST00000489629 ADAT2Q7Z6V5 191 aaKnown RBP5.3□□□□□ -1.56
CPSF3-205ENST00000489629 TP53I13Q8NBR0 393 aaPredicted RBP5.3□□□□□ -1.56
CPSF3-205ENST00000489629 RGS22Q8NE09 1264 aa5.3□□□□□ -1.56
CPSF3-205ENST00000489629 FBLN5Q9UBX5 448 aa5.3□□□□□ -1.56
CPSF3-205ENST00000489629 BACE2Q9Y5Z0 518 aa5.3□□□□□ -1.56
CPSF3-205ENST00000489629 ZC3H12DA2A288 527 aaKnown RBP5.29□□□□□ -1.56
CPSF3-205ENST00000489629 C2orf71A6NGG8 1288 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms