RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 KCNQ2O43526 872 aa11.89□□□□□ -0.51
CHD3-208ENST00000470531 KRT13P13646 458 aa11.89□□□□□ -0.51
CHD3-208ENST00000470531 CKAP4Q07065 602 aaKnown RBP11.89□□□□□ -0.51
CHD3-208ENST00000470531 EZH2Q15910 746 aaKnown RBP11.89□□□□□ -0.51
CHD3-208ENST00000470531 KRT79Q5XKE5 535 aa11.89□□□□□ -0.51
CHD3-208ENST00000470531 RSRC2Q7L4I2 434 aaKnown RBP11.89□□□□□ -0.51
CHD3-208ENST00000470531 TEX11Q8IYF3 940 aa11.89□□□□□ -0.51
CHD3-208ENST00000470531 FERMT2Q96AC1 680 aa11.89□□□□□ -0.51
CHD3-208ENST00000470531 CALR3Q96L12 384 aaKnown RBP11.89□□□□□ -0.51
CHD3-208ENST00000470531 SELENOSQ9BQE4 189 aa11.89□□□□□ -0.51
CHD3-208ENST00000470531 TUBE1Q9UJT0 475 aa11.89□□□□□ -0.51
CHD3-208ENST00000470531 POTEMA6NI47 508 aa11.89□□□□□ -0.51
CHD3-208ENST00000470531 FAM196BA6NMK8 535 aa11.89□□□□□ -0.51
CHD3-208ENST00000470531 CALML3P27482 149 aa11.89□□□□□ -0.51
CHD3-208ENST00000470531 VAV2P52735 878 aa11.89□□□□□ -0.51
CHD3-208ENST00000470531 SV2BQ7L1I2 683 aa11.89□□□□□ -0.51
CHD3-208ENST00000470531 PSMD1Q99460 953 aa11.89□□□□□ -0.51
CHD3-208ENST00000470531 NBPF3Q9H094 633 aa11.89□□□□□ -0.51
CHD3-208ENST00000470531 NHEJ1Q9H9Q4 299 aaPredicted RBP11.89□□□□□ -0.51
CHD3-208ENST00000470531 TMEM260Q9NX78 707 aa11.89□□□□□ -0.51
CHD3-208ENST00000470531 SLAIN2Q9P270 581 aa11.89□□□□□ -0.51
CHD3-208ENST00000470531 NRXN3Q9Y4C0 1643 aa11.89□□□□□ -0.51
CHD3-208ENST00000470531 SETD1AO15047 1707 aaKnown RBP11.89□□□□□ -0.51
CHD3-208ENST00000470531 RNF225M0QZC1 329 aaPredicted RBP11.88□□□□□ -0.51
CHD3-208ENST00000470531 SCNN1DP51172 638 aa11.88□□□□□ -0.51
CHD3-208ENST00000470531 SARNPP82979 210 aaKnown RBP11.88□□□□□ -0.51
CHD3-208ENST00000470531 AMPD3Q01432 767 aa11.88□□□□□ -0.51
CHD3-208ENST00000470531 FAM98CQ17RN3 349 aaKnown RBP11.88□□□□□ -0.51
CHD3-208ENST00000470531 RPGRQ92834 1020 aaKnown RBP11.88□□□□□ -0.51
CHD3-208ENST00000470531 NGLY1Q96IV0 654 aa11.88□□□□□ -0.51
CHD3-208ENST00000470531 GSDMAQ96QA5 445 aa11.88□□□□□ -0.51
CHD3-208ENST00000470531 KRT12Q99456 494 aa11.88□□□□□ -0.51
CHD3-208ENST00000470531 ANKZF1Q9H8Y5 726 aa11.88□□□□□ -0.51
CHD3-208ENST00000470531 PCDHB13Q9Y5F0 798 aa11.88□□□□□ -0.51
CHD3-208ENST00000470531 EIF4A3P38919 411 aaKnown RBP11.88□□□□□ -0.51
CHD3-208ENST00000470531 LIFRP42702 1097 aa11.88□□□□□ -0.51
CHD3-208ENST00000470531 ERVK-24P63145 666 aa11.88□□□□□ -0.51
CHD3-208ENST00000470531 UBE2SQ16763 222 aa11.88□□□□□ -0.51
CHD3-208ENST00000470531 MAP3K14Q99558 947 aa11.88□□□□□ -0.51
CHD3-208ENST00000470531 PAIP2Q9BPZ3 127 aaKnown RBP11.88□□□□□ -0.51
CHD3-208ENST00000470531 FAM217BQ9NTX9 383 aaPredicted RBP11.88□□□□□ -0.51
CHD3-208ENST00000470531 KCNK3O14649 394 aa11.88□□□□□ -0.51
CHD3-208ENST00000470531 BAG3O95817 575 aa11.88□□□□□ -0.51
CHD3-208ENST00000470531 TUBB4AP04350 444 aa11.88□□□□□ -0.51
CHD3-208ENST00000470531 SP4Q02446 784 aa11.88□□□□□ -0.51
CHD3-208ENST00000470531 MECOMQ03112 1051 aa11.88□□□□□ -0.51
CHD3-208ENST00000470531 MUM1L1Q5H9M0 696 aa11.88□□□□□ -0.51
CHD3-208ENST00000470531 EXOC4Q96A65 974 aa11.88□□□□□ -0.51
CHD3-208ENST00000470531 EPB41L5Q9HCM4 733 aa11.88□□□□□ -0.51
CHD3-208ENST00000470531 CAPN7Q9Y6W3 813 aa11.88□□□□□ -0.51
CHD3-208ENST00000470531 MROH5Q6ZUA9 1318 aa11.88□□□□□ -0.51
CHD3-208ENST00000470531 ERCC5P28715 1186 aaPredicted RBP11.87□□□□□ -0.51
CHD3-208ENST00000470531 CASP7P55210 303 aa11.87□□□□□ -0.51
CHD3-208ENST00000470531 UBXN2AP68543 259 aa11.87□□□□□ -0.51
CHD3-208ENST00000470531 DPYDQ12882 1025 aa11.87□□□□□ -0.51
CHD3-208ENST00000470531 NR1I3Q14994 352 aa11.87□□□□□ -0.51
CHD3-208ENST00000470531 CCDC91Q7Z6B0 441 aa11.87□□□□□ -0.51
CHD3-208ENST00000470531 PACS2Q86VP3 889 aa11.87□□□□□ -0.51
CHD3-208ENST00000470531 ISCA1Q9BUE6 129 aa11.87□□□□□ -0.51
CHD3-208ENST00000470531 AP1M1Q9BXS5 423 aa11.87□□□□□ -0.51
CHD3-208ENST00000470531 TMEM60Q9H2L4 133 aa11.87□□□□□ -0.51
CHD3-208ENST00000470531 C6orf50Q9HD87 102 aa11.87□□□□□ -0.51
CHD3-208ENST00000470531 LUC7LQ9NQ29 371 aaKnown RBP11.87□□□□□ -0.51
CHD3-208ENST00000470531 CCDC87Q9NVE4 849 aa11.87□□□□□ -0.51
CHD3-208ENST00000470531 ADAMTS1Q9UHI8 967 aa11.87□□□□□ -0.51
CHD3-208ENST00000470531 SFI1A8K8P3 1242 aa11.87□□□□□ -0.51
CHD3-208ENST00000470531 E7EVH7 732 aa11.87□□□□□ -0.51
CHD3-208ENST00000470531 DDX39AO00148 427 aaKnown RBP11.87□□□□□ -0.51
CHD3-208ENST00000470531 UTYO14607 1347 aa11.87□□□□□ -0.51
CHD3-208ENST00000470531 GTPBP6O43824 516 aaPredicted RBP11.87□□□□□ -0.51
CHD3-208ENST00000470531 BMP15O95972 392 aa11.87□□□□□ -0.51
CHD3-208ENST00000470531 PSEN1P49768 467 aa11.87□□□□□ -0.51
CHD3-208ENST00000470531 APBA1Q02410 837 aa11.87□□□□□ -0.51
CHD3-208ENST00000470531 GFPT1Q06210 699 aaPredicted RBP11.87□□□□□ -0.51
CHD3-208ENST00000470531 CEP85LQ5SZL2 805 aa11.87□□□□□ -0.51
CHD3-208ENST00000470531 PALLDQ8WX93 1383 aa11.87□□□□□ -0.51
CHD3-208ENST00000470531 RRP36Q96EU6 259 aaKnown RBP11.87□□□□□ -0.51
CHD3-208ENST00000470531 C8orf37Q96NL8 207 aa11.87□□□□□ -0.51
CHD3-208ENST00000470531 LACRTQ9GZZ8 138 aa11.87□□□□□ -0.51
CHD3-208ENST00000470531 NFU1Q9UMS0 254 aa11.87□□□□□ -0.51
CHD3-208ENST00000470531 ACTN4O43707 911 aaKnown RBP11.87□□□□□ -0.51
CHD3-208ENST00000470531 RPS8P62241 208 aaKnown RBP11.87□□□□□ -0.51
CHD3-208ENST00000470531 NTRK3Q16288 839 aa11.87□□□□□ -0.51
CHD3-208ENST00000470531 KIAA0753Q2KHM9 967 aa11.87□□□□□ -0.51
CHD3-208ENST00000470531 MGARPQ8TDB4 240 aa11.87□□□□□ -0.51
CHD3-208ENST00000470531 RNF26Q9BY78 433 aaPredicted RBP11.87□□□□□ -0.51
CHD3-208ENST00000470531 ADD3Q9UEY8 706 aaKnown RBP11.87□□□□□ -0.51
CHD3-208ENST00000470531 CACNA1FO60840 1977 aa11.87□□□□□ -0.51
CHD3-208ENST00000470531 ANKARQ7Z5J8 1434 aa11.86□□□□□ -0.51
CHD3-208ENST00000470531 EIF4E1BA6NMX2 242 aaKnown RBP11.86□□□□□ -0.51
CHD3-208ENST00000470531 LRRIQ3A6PVS8 624 aaPredicted RBP11.86□□□□□ -0.51
CHD3-208ENST00000470531 EIF3CLB5ME19 914 aaKnown RBP11.86□□□□□ -0.51
CHD3-208ENST00000470531 RFC4P35249 363 aa11.86□□□□□ -0.51
CHD3-208ENST00000470531 PMS1P54277 932 aaKnown RBP11.86□□□□□ -0.51
CHD3-208ENST00000470531 SLC20A2Q08357 652 aa11.86□□□□□ -0.51
CHD3-208ENST00000470531 TXNRD1Q16881 649 aa11.86□□□□□ -0.51
CHD3-208ENST00000470531 ARHGAP44Q17R89 818 aa11.86□□□□□ -0.51
CHD3-208ENST00000470531 BEND6Q5SZJ8 279 aaPredicted RBP11.86□□□□□ -0.51
CHD3-208ENST00000470531 EIF3CQ99613 913 aaKnown RBP11.86□□□□□ -0.51
CHD3-208ENST00000470531 FMN2Q9NZ56 1722 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms