RNA–Protein interactions for RNA: ENST00000466288.1

CXCR4-203, Transcript of C-X-C motif chemokine receptor 4, humanhuman

TSL 1 (best)

Gene CXCR4, Length 1,485 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-203ENST00000466288 CA3P07451 260 aa17.31■□□□□ 0.36
CXCR4-203ENST00000466288 TTLL4Q14679 1199 aa17.31■□□□□ 0.36
CXCR4-203ENST00000466288 TMEM67Q5HYA8 995 aa17.31■□□□□ 0.36
CXCR4-203ENST00000466288 HOMER2Q9NSB8 354 aa17.31■□□□□ 0.36
CXCR4-203ENST00000466288 FEM1BQ9UK73 627 aa17.31■□□□□ 0.36
CXCR4-203ENST00000466288 GREB1LQ9C091 1923 aaPredicted RBP17.3■□□□□ 0.36
CXCR4-203ENST00000466288 GTPBP6O43824 516 aaPredicted RBP17.3■□□□□ 0.36
CXCR4-203ENST00000466288 SMPD1P17405 629 aa17.3■□□□□ 0.36
CXCR4-203ENST00000466288 ATP5JP18859 108 aa17.3■□□□□ 0.36
CXCR4-203ENST00000466288 PSMC6P62333 389 aa17.3■□□□□ 0.36
CXCR4-203ENST00000466288 SBK1Q52WX2 424 aa17.3■□□□□ 0.36
CXCR4-203ENST00000466288 TMEM31Q5JXX7 168 aa17.3■□□□□ 0.36
CXCR4-203ENST00000466288 KRT40Q6A162 431 aa17.3■□□□□ 0.36
CXCR4-203ENST00000466288 STK11IPQ8N1F8 1099 aa17.3■□□□□ 0.36
CXCR4-203ENST00000466288 MKL1Q969V6 931 aa17.3■□□□□ 0.36
CXCR4-203ENST00000466288 HAUS7Q99871 368 aa17.3■□□□□ 0.36
CXCR4-203ENST00000466288 AP5M1Q9H0R1 490 aa17.3■□□□□ 0.36
CXCR4-203ENST00000466288 CERS4Q9HA82 394 aa17.3■□□□□ 0.36
CXCR4-203ENST00000466288 MKNK2Q9HBH9 465 aa17.3■□□□□ 0.36
CXCR4-203ENST00000466288 A1CFQ9NQ94 594 aaKnown RBP17.3■□□□□ 0.36
CXCR4-203ENST00000466288 COG5Q9UP83 839 aa17.3■□□□□ 0.36
CXCR4-203ENST00000466288 ZEB2O60315 1214 aa17.29■□□□□ 0.36
CXCR4-203ENST00000466288 PFKMP08237 780 aa17.29■□□□□ 0.36
CXCR4-203ENST00000466288 TMEM63BQ5T3F8 832 aa17.29■□□□□ 0.36
CXCR4-203ENST00000466288 KHSRPQ92945 711 aaKnown RBP eCLIP17.29■□□□□ 0.36
CXCR4-203ENST00000466288 ALDH8A1Q9H2A2 487 aaPredicted RBP17.29■□□□□ 0.36
CXCR4-203ENST00000466288 ACAD9Q9H845 621 aa17.29■□□□□ 0.36
CXCR4-203ENST00000466288 C11orf16Q9NQ32 467 aa17.29■□□□□ 0.36
CXCR4-203ENST00000466288 PDGFCQ9NRA1 345 aa17.29■□□□□ 0.36
CXCR4-203ENST00000466288 DDX49Q9Y6V7 483 aaKnown RBP17.29■□□□□ 0.36
CXCR4-203ENST00000466288 MCM3APO60318 1980 aa17.28■□□□□ 0.36
CXCR4-203ENST00000466288 PRRC2BQ5JSZ5 2229 aaKnown RBP17.28■□□□□ 0.36
CXCR4-203ENST00000466288 ASB14A6NK59 587 aa17.28■□□□□ 0.36
CXCR4-203ENST00000466288 TAPT1Q6NXT6 567 aa17.28■□□□□ 0.36
CXCR4-203ENST00000466288 GMCL1P1Q8NEA9 526 aa17.28■□□□□ 0.36
CXCR4-203ENST00000466288 Q9Y3F1 56 aa17.28■□□□□ 0.36
CXCR4-203ENST00000466288 ARHGEF15O94989 841 aa17.27■□□□□ 0.36
CXCR4-203ENST00000466288 IQSEC1Q6DN90 963 aa17.27■□□□□ 0.36
CXCR4-203ENST00000466288 LRRC47Q8N1G4 583 aaKnown RBP17.27■□□□□ 0.36
CXCR4-203ENST00000466288 CEP95Q96GE4 821 aa17.27■□□□□ 0.36
CXCR4-203ENST00000466288 STRBPQ96SI9 672 aaKnown RBP17.27■□□□□ 0.36
CXCR4-203ENST00000466288 BCL11AQ9H165 835 aa17.27■□□□□ 0.36
CXCR4-203ENST00000466288 TRMT13Q9NUP7 481 aaKnown RBP17.27■□□□□ 0.36
CXCR4-203ENST00000466288 MTMR4Q9NYA4 1195 aa17.27■□□□□ 0.36
CXCR4-203ENST00000466288 SYNPO2Q9UMS6 1093 aa17.27■□□□□ 0.36
CXCR4-203ENST00000466288 ZNF536O15090 1300 aa17.27■□□□□ 0.35
CXCR4-203ENST00000466288 GSG1L2A8MUP6 293 aa17.26■□□□□ 0.35
CXCR4-203ENST00000466288 GPR37L1O60883 481 aa17.26■□□□□ 0.35
CXCR4-203ENST00000466288 FDX1P10109 184 aa17.26■□□□□ 0.35
CXCR4-203ENST00000466288 CYP2C9P11712 490 aa17.26■□□□□ 0.35
CXCR4-203ENST00000466288 TAP1Q03518 808 aa17.26■□□□□ 0.35
CXCR4-203ENST00000466288 DEFB128Q7Z7B8 93 aa17.26■□□□□ 0.35
CXCR4-203ENST00000466288 RPAP2Q8IXW5 612 aaPredicted RBP17.26■□□□□ 0.35
CXCR4-203ENST00000466288 HLA-CQ95604 372 aa17.26■□□□□ 0.35
CXCR4-203ENST00000466288 RNF146Q9NTX7 359 aa17.26■□□□□ 0.35
CXCR4-203ENST00000466288 COG6Q9Y2V7 657 aa17.26■□□□□ 0.35
CXCR4-203ENST00000466288 MINDY4BA8MYZ0 360 aa17.25■□□□□ 0.35
CXCR4-203ENST00000466288 BMP3P12645 472 aa17.25■□□□□ 0.35
CXCR4-203ENST00000466288 GIMAP6Q6P9H5 292 aa17.25■□□□□ 0.35
CXCR4-203ENST00000466288 EEPD1Q7L9B9 569 aa17.25■□□□□ 0.35
CXCR4-203ENST00000466288 FBXO16Q8IX29 292 aaPredicted RBP17.25■□□□□ 0.35
CXCR4-203ENST00000466288 SIRT2Q8IXJ6 389 aa17.25■□□□□ 0.35
CXCR4-203ENST00000466288 PHOSPHO2Q8TCD6 241 aa17.25■□□□□ 0.35
CXCR4-203ENST00000466288 ARNTL2Q8WYA1 636 aa17.25■□□□□ 0.35
CXCR4-203ENST00000466288 SLC9A7Q96T83 725 aa17.25■□□□□ 0.35
CXCR4-203ENST00000466288 TTLL1O95922 423 aa17.24■□□□□ 0.35
CXCR4-203ENST00000466288 SUPT20HL2P0C7V6 817 aa17.24■□□□□ 0.35
CXCR4-203ENST00000466288 SLFN13Q68D06 897 aa17.24■□□□□ 0.35
CXCR4-203ENST00000466288 ZSCAN25Q6NSZ9 544 aa17.24■□□□□ 0.35
CXCR4-203ENST00000466288 PANK1Q8TE04 598 aa17.24■□□□□ 0.35
CXCR4-203ENST00000466288 TRERF1Q96PN7 1200 aa17.24■□□□□ 0.35
CXCR4-203ENST00000466288 TNKSO95271 1327 aa17.24■□□□□ 0.35
CXCR4-203ENST00000466288 TMEM232C9JQI7 657 aa17.24■□□□□ 0.35
CXCR4-203ENST00000466288 RAB11FIP3O75154 756 aa17.24■□□□□ 0.35
CXCR4-203ENST00000466288 PRDM1O75626 825 aa17.24■□□□□ 0.35
CXCR4-203ENST00000466288 STAT2P52630 851 aa17.24■□□□□ 0.35
CXCR4-203ENST00000466288 TKFCQ3LXA3 575 aa17.24■□□□□ 0.35
CXCR4-203ENST00000466288 ZNF444Q8N0Y2 327 aaPredicted RBP17.24■□□□□ 0.35
CXCR4-203ENST00000466288 WDFY4Q6ZS81 3184 aa17.23■□□□□ 0.35
CXCR4-203ENST00000466288 FAM86C2PA6NEL3 165 aa17.23■□□□□ 0.35
CXCR4-203ENST00000466288 LPXNO60711 386 aa17.23■□□□□ 0.35
CXCR4-203ENST00000466288 ACTN1P12814 892 aa17.23■□□□□ 0.35
CXCR4-203ENST00000466288 GRB10Q13322 594 aa17.23■□□□□ 0.35
CXCR4-203ENST00000466288 KIAA1211Q6ZU35 1233 aa17.23■□□□□ 0.35
CXCR4-203ENST00000466288 HERC6Q8IVU3 1022 aa17.23■□□□□ 0.35
CXCR4-203ENST00000466288 MORC4Q8TE76 937 aa17.23■□□□□ 0.35
CXCR4-203ENST00000466288 PURBQ96QR8 312 aaKnown RBP17.23■□□□□ 0.35
CXCR4-203ENST00000466288 EPB41L4AQ9HCS5 686 aaPredicted RBP17.23■□□□□ 0.35
CXCR4-203ENST00000466288 VTA1Q9NP79 307 aa17.23■□□□□ 0.35
CXCR4-203ENST00000466288 CD320Q9NPF0 282 aa17.23■□□□□ 0.35
CXCR4-203ENST00000466288 CYP39A1Q9NYL5 469 aa17.23■□□□□ 0.35
CXCR4-203ENST00000466288 PI4K2BG5E9Z4 385 aa17.22■□□□□ 0.35
CXCR4-203ENST00000466288 ALAS1P13196 640 aa17.22■□□□□ 0.35
CXCR4-203ENST00000466288 RFC2P35250 354 aa17.22■□□□□ 0.35
CXCR4-203ENST00000466288 PURAQ00577 322 aaKnown RBP17.22■□□□□ 0.35
CXCR4-203ENST00000466288 DUSP28Q4G0W2 176 aa17.22■□□□□ 0.35
CXCR4-203ENST00000466288 MUM1L1Q5H9M0 696 aa17.22■□□□□ 0.35
CXCR4-203ENST00000466288 SPRED2Q7Z698 418 aa17.22■□□□□ 0.35
CXCR4-203ENST00000466288 CHURC1Q8WUH1 139 aa17.22■□□□□ 0.35
CXCR4-203ENST00000466288 STAG1Q8WVM7 1258 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms