RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	TSPY8	P0CW00	308 aa		13.27	□□□□□ -0.29
PTPN7-204	ENST00000462815	ACR	P10323	421 aa		13.27	□□□□□ -0.29
PTPN7-204	ENST00000462815	SMPD1	P17405	629 aa		13.27	□□□□□ -0.29
PTPN7-204	ENST00000462815	PDE4B	Q07343	736 aa		13.27	□□□□□ -0.29
PTPN7-204	ENST00000462815	TKFC	Q3LXA3	575 aa		13.27	□□□□□ -0.29
PTPN7-204	ENST00000462815	ZNF365	Q70YC5	407 aa		13.27	□□□□□ -0.29
PTPN7-204	ENST00000462815	FAM160B2	Q86V87	743 aa		13.27	□□□□□ -0.29
PTPN7-204	ENST00000462815	PDGFC	Q9NRA1	345 aa		13.27	□□□□□ -0.29
PTPN7-204	ENST00000462815	CYP39A1	Q9NYL5	469 aa		13.27	□□□□□ -0.29
PTPN7-204	ENST00000462815	CXXC1	Q9P0U4	656 aa	Predicted RBP	13.27	□□□□□ -0.29
PTPN7-204	ENST00000462815	PRR12	Q9ULL5	1215 aa		13.27	□□□□□ -0.29
PTPN7-204	ENST00000462815	FGR	P09769	529 aa		13.26	□□□□□ -0.29
PTPN7-204	ENST00000462815	MCC	P23508	829 aa		13.26	□□□□□ -0.29
PTPN7-204	ENST00000462815	CYP2C18	P33260	490 aa		13.26	□□□□□ -0.29
PTPN7-204	ENST00000462815	SNAP25	P60880	206 aa		13.26	□□□□□ -0.29
PTPN7-204	ENST00000462815	TNFAIP2	Q03169	654 aa		13.26	□□□□□ -0.29
PTPN7-204	ENST00000462815	VPS53	Q5VIR6	699 aa		13.26	□□□□□ -0.29
PTPN7-204	ENST00000462815	CXCL17	Q6UXB2	119 aa		13.26	□□□□□ -0.29
PTPN7-204	ENST00000462815	CCDC129	Q6ZRS4	1044 aa		13.26	□□□□□ -0.29
PTPN7-204	ENST00000462815	KCTD1	Q719H9	257 aa		13.26	□□□□□ -0.29
PTPN7-204	ENST00000462815	TLK2	Q86UE8	772 aa		13.26	□□□□□ -0.29
PTPN7-204	ENST00000462815	HERVK_113	Q902F9	699 aa		13.26	□□□□□ -0.29
PTPN7-204	ENST00000462815	TRERF1	Q96PN7	1200 aa		13.26	□□□□□ -0.29
PTPN7-204	ENST00000462815	PURB	Q96QR8	312 aa	Known RBP	13.26	□□□□□ -0.29
PTPN7-204	ENST00000462815	PPP1R12C	Q9BZL4	782 aa		13.26	□□□□□ -0.29
PTPN7-204	ENST00000462815	NAPB	Q9H115	298 aa		13.26	□□□□□ -0.29
PTPN7-204	ENST00000462815	WNT8A	Q9H1J5	351 aa		13.26	□□□□□ -0.29
PTPN7-204	ENST00000462815	SPC25	Q9HBM1	224 aa		13.26	□□□□□ -0.29
PTPN7-204	ENST00000462815	IL23A	Q9NPF7	189 aa		13.26	□□□□□ -0.29
PTPN7-204	ENST00000462815	PRDM6	Q9NQX0	595 aa		13.26	□□□□□ -0.29
PTPN7-204	ENST00000462815	ANAPC4	Q9UJX5	808 aa		13.26	□□□□□ -0.29
PTPN7-204	ENST00000462815	BDP1	A6H8Y1	2624 aa		13.26	□□□□□ -0.29
PTPN7-204	ENST00000462815	ASB14	A6NK59	587 aa		13.25	□□□□□ -0.29
PTPN7-204	ENST00000462815	SLC1A4	P43007	532 aa		13.25	□□□□□ -0.29
PTPN7-204	ENST00000462815	CTDSPL2	Q05D32	466 aa		13.25	□□□□□ -0.29
PTPN7-204	ENST00000462815	ADGRE1	Q14246	886 aa		13.25	□□□□□ -0.29
PTPN7-204	ENST00000462815	FSCN1	Q16658	493 aa	Known RBP	13.25	□□□□□ -0.29
PTPN7-204	ENST00000462815	RCSD1	Q6JBY9	416 aa		13.25	□□□□□ -0.29
PTPN7-204	ENST00000462815	PSRC1	Q6PGN9	363 aa	Predicted RBP	13.25	□□□□□ -0.29
PTPN7-204	ENST00000462815	FBXO16	Q8IX29	292 aa	Predicted RBP	13.25	□□□□□ -0.29
PTPN7-204	ENST00000462815	TMEM199	Q8N511	208 aa		13.25	□□□□□ -0.29
PTPN7-204	ENST00000462815	CHURC1	Q8WUH1	139 aa		13.25	□□□□□ -0.29
PTPN7-204	ENST00000462815	NOC4L	Q9BVI4	516 aa	Known RBP	13.25	□□□□□ -0.29
PTPN7-204	ENST00000462815	NACAP1	Q9BZK3	213 aa		13.25	□□□□□ -0.29
PTPN7-204	ENST00000462815	RANBP17	Q9H2T7	1088 aa	Known RBP	13.25	□□□□□ -0.29
PTPN7-204	ENST00000462815	CTDP1	Q9Y5B0	961 aa	Predicted RBP	13.25	□□□□□ -0.29
PTPN7-204	ENST00000462815	B4GALT4	O60513	344 aa		13.24	□□□□□ -0.29
PTPN7-204	ENST00000462815	CABYR	O75952	493 aa		13.24	□□□□□ -0.29
PTPN7-204	ENST00000462815	ALAS1	P13196	640 aa		13.24	□□□□□ -0.29
PTPN7-204	ENST00000462815	ITGA7	Q13683	1181 aa		13.24	□□□□□ -0.29
PTPN7-204	ENST00000462815	CCDC174	Q6PII3	467 aa		13.24	□□□□□ -0.29
PTPN7-204	ENST00000462815	BTNL9	Q6UXG8	535 aa		13.24	□□□□□ -0.29
PTPN7-204	ENST00000462815	CHMP4C	Q96CF2	233 aa		13.24	□□□□□ -0.29
PTPN7-204	ENST00000462815	FSD1	Q9BTV5	496 aa		13.24	□□□□□ -0.29
PTPN7-204	ENST00000462815	TRPV6	Q9H1D0	765 aa		13.24	□□□□□ -0.29
PTPN7-204	ENST00000462815	YBX2	Q9Y2T7	364 aa	Known RBP	13.24	□□□□□ -0.29
PTPN7-204	ENST00000462815		Q9Y3F1	56 aa		13.24	□□□□□ -0.29
PTPN7-204	ENST00000462815	ERC2	O15083	957 aa		13.23	□□□□□ -0.29
PTPN7-204	ENST00000462815	TLR3	O15455	904 aa	Known RBP	13.23	□□□□□ -0.29
PTPN7-204	ENST00000462815	ORC4	O43929	436 aa		13.23	□□□□□ -0.29
PTPN7-204	ENST00000462815	ICAM1	P05362	532 aa		13.23	□□□□□ -0.29
PTPN7-204	ENST00000462815	MX1	P20591	662 aa		13.23	□□□□□ -0.29
PTPN7-204	ENST00000462815	PSMC6	P62333	389 aa		13.23	□□□□□ -0.29
PTPN7-204	ENST00000462815	LRRFIP1	Q32MZ4	808 aa	Known RBP	13.23	□□□□□ -0.29
PTPN7-204	ENST00000462815	TJAP1	Q5JTD0	557 aa		13.23	□□□□□ -0.29
PTPN7-204	ENST00000462815	AKNAD1	Q5T1N1	836 aa		13.23	□□□□□ -0.29
PTPN7-204	ENST00000462815	IQSEC1	Q6DN90	963 aa		13.23	□□□□□ -0.29
PTPN7-204	ENST00000462815	TTBK2	Q6IQ55	1244 aa		13.23	□□□□□ -0.29
PTPN7-204	ENST00000462815	HIPK3	Q9H422	1215 aa		13.23	□□□□□ -0.29
PTPN7-204	ENST00000462815	PRDM12	Q9H4Q4	367 aa		13.23	□□□□□ -0.29
PTPN7-204	ENST00000462815	VTA1	Q9NP79	307 aa		13.23	□□□□□ -0.29
PTPN7-204	ENST00000462815	STX8	Q9UNK0	236 aa		13.23	□□□□□ -0.29
PTPN7-204	ENST00000462815	RBM47	A0AV96	593 aa	Known RBP	13.22	□□□□□ -0.29
PTPN7-204	ENST00000462815	TSPY2	A6NKD2	308 aa		13.22	□□□□□ -0.29
PTPN7-204	ENST00000462815	NFIB	O00712	420 aa		13.22	□□□□□ -0.29
PTPN7-204	ENST00000462815	DYNC1LI2	O43237	492 aa	Predicted RBP	13.22	□□□□□ -0.29
PTPN7-204	ENST00000462815	SLC3A2	P08195	630 aa	Known RBP	13.22	□□□□□ -0.29
PTPN7-204	ENST00000462815	ALX1	Q15699	326 aa		13.22	□□□□□ -0.29
PTPN7-204	ENST00000462815	DUSP28	Q4G0W2	176 aa		13.22	□□□□□ -0.29
PTPN7-204	ENST00000462815	EEPD1	Q7L9B9	569 aa		13.22	□□□□□ -0.29
PTPN7-204	ENST00000462815	DCAF4	Q8WV16	495 aa		13.22	□□□□□ -0.29
PTPN7-204	ENST00000462815	CLEC4D	Q8WXI8	215 aa		13.22	□□□□□ -0.29
PTPN7-204	ENST00000462815	VTI1A	Q96AJ9	217 aa		13.22	□□□□□ -0.29
PTPN7-204	ENST00000462815	SEZ6L	Q9BYH1	1024 aa		13.22	□□□□□ -0.29
PTPN7-204	ENST00000462815	SCN10A	Q9Y5Y9	1956 aa		13.21	□□□□□ -0.29
PTPN7-204	ENST00000462815	TANC1	Q9C0D5	1861 aa		13.21	□□□□□ -0.29
PTPN7-204	ENST00000462815	EDNRB	P24530	442 aa		13.21	□□□□□ -0.29
PTPN7-204	ENST00000462815	SLC16A2	P36021	539 aa		13.21	□□□□□ -0.29
PTPN7-204	ENST00000462815	ALDH5A1	P51649	535 aa	Predicted RBP	13.21	□□□□□ -0.29
PTPN7-204	ENST00000462815	CCL23	P55773	120 aa		13.21	□□□□□ -0.29
PTPN7-204	ENST00000462815	BAAT	Q14032	418 aa	Predicted RBP	13.21	□□□□□ -0.29
PTPN7-204	ENST00000462815	PPP4R3B	Q5MIZ7	849 aa		13.21	□□□□□ -0.29
PTPN7-204	ENST00000462815	SLC30A10	Q6XR72	485 aa		13.21	□□□□□ -0.29
PTPN7-204	ENST00000462815	SYMPK	Q92797	1274 aa	Known RBP	13.21	□□□□□ -0.29
PTPN7-204	ENST00000462815	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	13.21	□□□□□ -0.29
PTPN7-204	ENST00000462815	NKX2-4	Q9H2Z4	354 aa		13.21	□□□□□ -0.29
PTPN7-204	ENST00000462815	CCPG1	Q9ULG6	757 aa		13.21	□□□□□ -0.29
PTPN7-204	ENST00000462815	ZMYM6	O95789	1325 aa		13.2	□□□□□ -0.3
PTPN7-204	ENST00000462815	LOC102724159	A0A0B4J2E5	919 aa		13.2	□□□□□ -0.3
PTPN7-204	ENST00000462815		A0A0D9SFI3	127 aa		13.2	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms