RNA–Protein interactions for RNA: ENST00000455883.2

CSMD3-204, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 12,485 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-204ENST00000455883 DEFA1P59665 94 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 DEFA3P59666 94 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 POSTNQ15063 836 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 RINT1Q6NUQ1 792 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 CENPUQ71F23 418 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 PNMA8AQ86V59 439 aaPredicted RBP5.68□□□□□ -1.5
CSMD3-204ENST00000455883 SCG3Q8WXD2 468 aaKnown RBP5.68□□□□□ -1.5
CSMD3-204ENST00000455883 DHTKD1Q96HY7 919 aaPredicted RBP5.68□□□□□ -1.5
CSMD3-204ENST00000455883 DSCC1Q9BVC3 393 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 GUCA1BQ9UMX6 200 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 ZNF148Q9UQR1 794 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 CLEC17AQ6ZS10 378 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 FAM9CQ8IZT9 166 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 SELENOSQ9BQE4 189 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 CACNA1BQ00975 2339 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 TMEM247A6NEH6 219 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 GFPT2O94808 682 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 ATF7P17544 494 aaPredicted RBP5.68□□□□□ -1.5
CSMD3-204ENST00000455883 AP1B1Q10567 949 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 GEN1Q17RS7 908 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 ZNF569Q5MCW4 686 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 KIFC2Q96AC6 838 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 CARD10Q9BWT7 1032 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 C8orf4Q9NR00 106 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 NUP205Q92621 2012 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 DENND4BO75064 1496 aaPredicted RBP5.68□□□□□ -1.5
CSMD3-204ENST00000455883 PHACTR2O75167 634 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 DEAF1O75398 565 aaPredicted RBP5.68□□□□□ -1.5
CSMD3-204ENST00000455883 CHGBP05060 677 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 TBC1D8BQ0IIM8 1120 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 SURF1Q15526 300 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 RNF207Q6ZRF8 634 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 TADA2BQ86TJ2 420 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 PRUNE1Q86TP1 453 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 ELOA2Q8IYF1 753 aaPredicted RBP5.68□□□□□ -1.5
CSMD3-204ENST00000455883 MCM9Q9NXL9 1143 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 PLCB3Q01970 1234 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 RPS6KA2Q15349 733 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 ZNF274Q96GC6 653 aaPredicted RBP5.68□□□□□ -1.5
CSMD3-204ENST00000455883 SCN2AQ99250 2005 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 MAPK13O15264 365 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 ECT2Q9H8V3 914 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 PCDHB13Q9Y5F0 798 aa5.68□□□□□ -1.5
CSMD3-204ENST00000455883 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.68□□□□□ -1.5
CSMD3-204ENST00000455883 ZSCAN20P17040 1043 aaPredicted RBP5.67□□□□□ -1.5
CSMD3-204ENST00000455883 NLRP12P59046 1061 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 BFSP1Q12934 665 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 ANO1Q5XXA6 986 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 ARL6IP4Q66PJ3 421 aaKnown RBP5.67□□□□□ -1.5
CSMD3-204ENST00000455883 ARHGEF25Q86VW2 580 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 FAM186BQ8IYM0 893 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 STX19Q8N4C7 294 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 LTV1Q96GA3 475 aaPredicted RBP5.67□□□□□ -1.5
CSMD3-204ENST00000455883 LRGUKQ96M69 825 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 KIAA1468Q9P260 1216 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 UVRAGQ9P2Y5 699 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 CDC42BPGQ6DT37 1551 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 SPAG6O75602 509 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 OAS2P29728 719 aaKnown RBP5.67□□□□□ -1.5
CSMD3-204ENST00000455883 RAP1GDS1P52306 607 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 TTC6Q86TZ1 520 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 BBS5Q8N3I7 341 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 CNBD1Q8NA66 436 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 MBD2Q9UBB5 411 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 DCDC2Q9UHG0 476 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 NPATQ14207 1427 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 C16orf96A6NNT2 1141 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 DAPK3O43293 454 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 LRRC63Q05C16 580 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 PLA2G4DQ86XP0 818 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 ATP6V0A1Q93050 837 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 PHACTR1Q9C0D0 580 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 NHEJ1Q9H9Q4 299 aaPredicted RBP5.67□□□□□ -1.5
CSMD3-204ENST00000455883 MRPL47Q9HD33 250 aaKnown RBP5.67□□□□□ -1.5
CSMD3-204ENST00000455883 PDP2Q9P2J9 529 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 NFU1Q9UMS0 254 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 AGTPBP1Q9UPW5 1226 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 PGRMC1O00264 195 aaKnown RBP5.67□□□□□ -1.5
CSMD3-204ENST00000455883 SERPINI2O75830 405 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 KRT14P02533 472 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 HSPA9P38646 679 aaKnown RBP5.67□□□□□ -1.5
CSMD3-204ENST00000455883 CNGA2Q16280 664 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 SYDE1Q6ZW31 735 aaPredicted RBP5.67□□□□□ -1.5
CSMD3-204ENST00000455883 RHOT2Q8IXI1 618 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 NECAB1Q8N987 351 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 GIPC2Q8TF65 315 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 TBC1D23Q9NUY8 699 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 ZHX2Q9Y6X8 837 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 PRIM1P49642 420 aaKnown RBP5.67□□□□□ -1.5
CSMD3-204ENST00000455883 STX1BP61266 288 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 RAB44Q7Z6P3 723 aaPredicted RBP5.67□□□□□ -1.5
CSMD3-204ENST00000455883 REXO1Q8N1G1 1221 aaKnown RBP5.67□□□□□ -1.5
CSMD3-204ENST00000455883 EFHBQ8N7U6 833 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 CCDC28BQ9BUN5 200 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 AP4S1Q9Y587 144 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 MORC2Q9Y6X9 1032 aaPredicted RBP5.67□□□□□ -1.5
CSMD3-204ENST00000455883 KRT37O76014 449 aa5.67□□□□□ -1.5
CSMD3-204ENST00000455883 SYF2O95926 243 aaKnown RBP5.67□□□□□ -1.5
CSMD3-204ENST00000455883 LONP1P36776 959 aaKnown RBP5.67□□□□□ -1.5
CSMD3-204ENST00000455883 RCSD1Q6JBY9 416 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms