RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 RAB33AQ14088 237 aa6.2□□□□□ -1.42
USP40-209ENST00000452724 NCAPHQ15003 741 aa6.2□□□□□ -1.42
USP40-209ENST00000452724 ANKRD39Q53RE8 183 aa6.2□□□□□ -1.42
USP40-209ENST00000452724 DCAF15Q66K64 600 aa6.2□□□□□ -1.42
USP40-209ENST00000452724 C6orf15Q6UXA7 325 aaPredicted RBP6.2□□□□□ -1.42
USP40-209ENST00000452724 KLHL6Q8WZ60 621 aa6.2□□□□□ -1.42
USP40-209ENST00000452724 UBXN4Q92575 508 aa6.2□□□□□ -1.42
USP40-209ENST00000452724 AP5S1Q9NUS5 200 aa6.2□□□□□ -1.42
USP40-209ENST00000452724 RAPGEFL1Q9UHV5 662 aa6.2□□□□□ -1.42
USP40-209ENST00000452724 SF3B6Q9Y3B4 125 aaKnown RBP6.2□□□□□ -1.42
USP40-209ENST00000452724 KCTD3Q9Y597 815 aa6.2□□□□□ -1.42
USP40-209ENST00000452724 IRAK3Q9Y616 596 aa6.2□□□□□ -1.42
USP40-209ENST00000452724 GSTM1P09488 218 aa6.19□□□□□ -1.42
USP40-209ENST00000452724 ITGA4P13612 1032 aa6.19□□□□□ -1.42
USP40-209ENST00000452724 PRKCAP17252 672 aa6.19□□□□□ -1.42
USP40-209ENST00000452724 TCEAL1Q15170 157 aa6.19□□□□□ -1.42
USP40-209ENST00000452724 TCERG1LQ5VWI1 586 aa6.19□□□□□ -1.42
USP40-209ENST00000452724 NBPF6Q5VWK0 638 aa6.19□□□□□ -1.42
USP40-209ENST00000452724 HLA-DQA1Q5Y7H0 255 aa6.19□□□□□ -1.42
USP40-209ENST00000452724 KIAA1211LQ6NV74 962 aa6.19□□□□□ -1.42
USP40-209ENST00000452724 CYP2R1Q6VVX0 501 aa6.19□□□□□ -1.42
USP40-209ENST00000452724 SLCO6A1Q86UG4 719 aa6.19□□□□□ -1.42
USP40-209ENST00000452724 JAMLQ86YT9 394 aa6.19□□□□□ -1.42
USP40-209ENST00000452724 FAM178BQ8IXR5 827 aa6.19□□□□□ -1.42
USP40-209ENST00000452724 CELF2-AS1Q8N7Q2 184 aa6.19□□□□□ -1.42
USP40-209ENST00000452724 NUP43Q8NFH3 380 aa6.19□□□□□ -1.42
USP40-209ENST00000452724 MICAL1Q8TDZ2 1067 aa6.19□□□□□ -1.42
USP40-209ENST00000452724 SIGLEC10Q96LC7 697 aa6.19□□□□□ -1.42
USP40-209ENST00000452724 NBPF4Q96M43 638 aa6.19□□□□□ -1.42
USP40-209ENST00000452724 DNAJC2Q99543 621 aaKnown RBP6.19□□□□□ -1.42
USP40-209ENST00000452724 HAUS7Q99871 368 aa6.19□□□□□ -1.42
USP40-209ENST00000452724 PLCD4Q9BRC7 762 aa6.19□□□□□ -1.42
USP40-209ENST00000452724 SGPP1Q9BX95 441 aa6.19□□□□□ -1.42
USP40-209ENST00000452724 FHOD1Q9Y613 1164 aa6.19□□□□□ -1.42
USP40-209ENST00000452724 B2RBV5 119 aa6.18□□□□□ -1.42
USP40-209ENST00000452724 U2SURPO15042 1029 aaKnown RBP6.18□□□□□ -1.42
USP40-209ENST00000452724 SHOXO15266 292 aa6.18□□□□□ -1.42
USP40-209ENST00000452724 DDAH1O94760 285 aa6.18□□□□□ -1.42
USP40-209ENST00000452724 VIPR1P32241 457 aa6.18□□□□□ -1.42
USP40-209ENST00000452724 YBX1P67809 324 aaKnown RBP6.18□□□□□ -1.42
USP40-209ENST00000452724 DDR2Q16832 855 aa6.18□□□□□ -1.42
USP40-209ENST00000452724 SOGA3Q5TF21 947 aa6.18□□□□□ -1.42
USP40-209ENST00000452724 HEATR6Q6AI08 1181 aaKnown RBP6.18□□□□□ -1.42
USP40-209ENST00000452724 GP6Q9HCN6 339 aa6.18□□□□□ -1.42
USP40-209ENST00000452724 GCM1Q9NP62 436 aa6.18□□□□□ -1.42
USP40-209ENST00000452724 ST7Q9NRC1 585 aa6.18□□□□□ -1.42
USP40-209ENST00000452724 MBD1Q9UIS9 605 aaPredicted RBP6.18□□□□□ -1.42
USP40-209ENST00000452724 A0A1W2PQJ5 194 aa6.17□□□□□ -1.42
USP40-209ENST00000452724 CBFA2T2O43439 604 aa6.17□□□□□ -1.42
USP40-209ENST00000452724 GJB6O95452 261 aa6.17□□□□□ -1.42
USP40-209ENST00000452724 EFEMP2O95967 443 aa6.17□□□□□ -1.42
USP40-209ENST00000452724 EPHX1P07099 455 aa6.17□□□□□ -1.42
USP40-209ENST00000452724 ZNF445P59923 1031 aa6.17□□□□□ -1.42
USP40-209ENST00000452724 POU4F1Q01851 419 aa6.17□□□□□ -1.42
USP40-209ENST00000452724 RAB3GAP1Q15042 981 aa6.17□□□□□ -1.42
USP40-209ENST00000452724 FIBCD1Q8N539 461 aa6.17□□□□□ -1.42
USP40-209ENST00000452724 PMFBP1Q8TBY8 1022 aa6.17□□□□□ -1.42
USP40-209ENST00000452724 KLHL25Q9H0H3 589 aa6.17□□□□□ -1.42
USP40-209ENST00000452724 USP35Q9P2H5 1018 aa6.17□□□□□ -1.42
USP40-209ENST00000452724 IMPACTQ9P2X3 320 aa6.17□□□□□ -1.42
USP40-209ENST00000452724 ACSL6Q9UKU0 697 aa6.17□□□□□ -1.42
USP40-209ENST00000452724 ZNF451Q9Y4E5 1061 aa6.17□□□□□ -1.42
USP40-209ENST00000452724 A0A087WZG4 1122 aa6.16□□□□□ -1.42
USP40-209ENST00000452724 H0Y8X5 98 aa6.16□□□□□ -1.42
USP40-209ENST00000452724 N4BP3O15049 544 aa6.16□□□□□ -1.42
USP40-209ENST00000452724 INHBBP09529 407 aa6.16□□□□□ -1.42
USP40-209ENST00000452724 CD247P20963 164 aa6.16□□□□□ -1.42
USP40-209ENST00000452724 RTP2Q5QGT7 225 aa6.16□□□□□ -1.42
USP40-209ENST00000452724 LILRA6Q6PI73 481 aa6.16□□□□□ -1.42
USP40-209ENST00000452724 TTLL10Q6ZVT0 673 aa6.16□□□□□ -1.42
USP40-209ENST00000452724 BRF1Q92994 677 aa6.16□□□□□ -1.42
USP40-209ENST00000452724 SLC12A9Q9BXP2 914 aa6.16□□□□□ -1.42
USP40-209ENST00000452724 GBP3Q9H0R5 595 aa6.16□□□□□ -1.42
USP40-209ENST00000452724 DIS3Q9Y2L1 958 aaKnown RBP6.16□□□□□ -1.42
USP40-209ENST00000452724 ANKRD34BA5PLL1 514 aa6.15□□□□□ -1.42
USP40-209ENST00000452724 NUDT19A8MXV4 375 aa6.15□□□□□ -1.42
USP40-209ENST00000452724 TBC1D8O95759 1140 aa6.15□□□□□ -1.42
USP40-209ENST00000452724 NAT2P11245 290 aa6.15□□□□□ -1.42
USP40-209ENST00000452724 SDHBP21912 280 aa6.15□□□□□ -1.42
USP40-209ENST00000452724 ZNF143P52747 638 aaPredicted RBP6.15□□□□□ -1.42
USP40-209ENST00000452724 RBM10P98175 930 aaKnown RBP6.15□□□□□ -1.42
USP40-209ENST00000452724 SERINC3Q13530 473 aa6.15□□□□□ -1.42
USP40-209ENST00000452724 NR1I3Q14994 352 aa6.15□□□□□ -1.42
USP40-209ENST00000452724 MRM1Q6IN84 353 aaKnown RBP6.15□□□□□ -1.42
USP40-209ENST00000452724 TMC6Q7Z403 805 aa6.15□□□□□ -1.42
USP40-209ENST00000452724 MZB1Q8WU39 189 aa6.15□□□□□ -1.42
USP40-209ENST00000452724 FGD4Q96M96 766 aa6.15□□□□□ -1.42
USP40-209ENST00000452724 JMJD8Q96S16 334 aa6.15□□□□□ -1.42
USP40-209ENST00000452724 CNTD2Q9H8S5 307 aa6.15□□□□□ -1.42
USP40-209ENST00000452724 TNFRSF12AQ9NP84 129 aa6.15□□□□□ -1.42
USP40-209ENST00000452724 SIRPGQ9P1W8 387 aa6.15□□□□□ -1.42
USP40-209ENST00000452724 WHRNQ9P202 907 aa6.15□□□□□ -1.42
USP40-209ENST00000452724 SUSD2Q9UGT4 822 aa6.15□□□□□ -1.42
USP40-209ENST00000452724 FGF10O15520 208 aaPredicted RBP6.14□□□□□ -1.43
USP40-209ENST00000452724 CD3EP07766 207 aa6.14□□□□□ -1.43
USP40-209ENST00000452724 PI3P19957 117 aa6.14□□□□□ -1.43
USP40-209ENST00000452724 SSPNQ14714 243 aa6.14□□□□□ -1.43
USP40-209ENST00000452724 ADAT2Q7Z6V5 191 aaKnown RBP6.14□□□□□ -1.43
USP40-209ENST00000452724 ZCCHC4Q9H5U6 513 aa6.14□□□□□ -1.43
USP40-209ENST00000452724 NOL6Q9H6R4 1146 aaKnown RBP6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms