RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 KIF11P52732 1056 aa10.05□□□□□ -0.8
COPB1-202ENST00000439561 EHHADHQ08426 723 aa10.05□□□□□ -0.8
COPB1-202ENST00000439561 PRPF4BQ13523 1007 aaKnown RBP10.05□□□□□ -0.8
COPB1-202ENST00000439561 CFAP221Q4G0U5 840 aa10.05□□□□□ -0.8
COPB1-202ENST00000439561 PROCA1Q8NCQ7 364 aaPredicted RBP10.05□□□□□ -0.8
COPB1-202ENST00000439561 STAG1Q8WVM7 1258 aa10.05□□□□□ -0.8
COPB1-202ENST00000439561 NOX5Q96PH1 765 aa10.05□□□□□ -0.8
COPB1-202ENST00000439561 CAPN11Q9UMQ6 739 aa10.05□□□□□ -0.8
COPB1-202ENST00000439561 ECM2O94769 699 aaPredicted RBP10.05□□□□□ -0.8
COPB1-202ENST00000439561 TCP1P17987 556 aaKnown RBP10.05□□□□□ -0.8
COPB1-202ENST00000439561 KIF5BP33176 963 aa10.05□□□□□ -0.8
COPB1-202ENST00000439561 RAPGEF1Q13905 1077 aa10.05□□□□□ -0.8
COPB1-202ENST00000439561 SOGA3Q5TF21 947 aa10.05□□□□□ -0.8
COPB1-202ENST00000439561 NLRP10Q86W26 655 aa10.05□□□□□ -0.8
COPB1-202ENST00000439561 TICAM2Q86XR7 235 aa10.05□□□□□ -0.8
COPB1-202ENST00000439561 DZIP3Q86Y13 1208 aaKnown RBP10.05□□□□□ -0.8
COPB1-202ENST00000439561 OSBPL9Q96SU4 736 aa10.05□□□□□ -0.8
COPB1-202ENST00000439561 ISCA1Q9BUE6 129 aa10.05□□□□□ -0.8
COPB1-202ENST00000439561 FBXO3Q9UK99 471 aa10.05□□□□□ -0.8
COPB1-202ENST00000439561 SNX12Q9UMY4 172 aa10.05□□□□□ -0.8
COPB1-202ENST00000439561 TLDC2A0PJX2 215 aa10.05□□□□□ -0.8
COPB1-202ENST00000439561 TARSL2A2RTX5 802 aaKnown RBP10.05□□□□□ -0.8
COPB1-202ENST00000439561 ZSCAN5CA6NGD5 496 aaPredicted RBP10.05□□□□□ -0.8
COPB1-202ENST00000439561 RPS6KA5O75582 802 aa10.05□□□□□ -0.8
COPB1-202ENST00000439561 CALM1P0DP23 149 aa10.05□□□□□ -0.8
COPB1-202ENST00000439561 CALM2P0DP24 149 aa10.05□□□□□ -0.8
COPB1-202ENST00000439561 CALM3P0DP25 149 aa10.05□□□□□ -0.8
COPB1-202ENST00000439561 ATP2C1P98194 919 aaPredicted RBP10.05□□□□□ -0.8
COPB1-202ENST00000439561 PAK2Q13177 524 aa10.05□□□□□ -0.8
COPB1-202ENST00000439561 CPLX4Q7Z7G2 160 aa10.05□□□□□ -0.8
COPB1-202ENST00000439561 ELOA2Q8IYF1 753 aaPredicted RBP10.05□□□□□ -0.8
COPB1-202ENST00000439561 BLIDQ8IZY5 108 aa10.05□□□□□ -0.8
COPB1-202ENST00000439561 CALML4Q96GE6 196 aa10.05□□□□□ -0.8
COPB1-202ENST00000439561 DISC1Q9NRI5 854 aa10.05□□□□□ -0.8
COPB1-202ENST00000439561 TBC1D7Q9P0N9 293 aa10.05□□□□□ -0.8
COPB1-202ENST00000439561 PCDH11XQ9BZA7 1347 aa10.04□□□□□ -0.8
COPB1-202ENST00000439561 PCDH11YQ9BZA8 1340 aa10.04□□□□□ -0.8
COPB1-202ENST00000439561 SETD1AO15047 1707 aaKnown RBP10.04□□□□□ -0.8
COPB1-202ENST00000439561 CCNT1O60563 726 aaKnown RBP10.04□□□□□ -0.8
COPB1-202ENST00000439561 PRPF6O94906 941 aaKnown RBP10.04□□□□□ -0.8
COPB1-202ENST00000439561 KRT18P05783 430 aaKnown RBP10.04□□□□□ -0.8
COPB1-202ENST00000439561 NR1D1P20393 614 aa10.04□□□□□ -0.8
COPB1-202ENST00000439561 CALML3P27482 149 aa10.04□□□□□ -0.8
COPB1-202ENST00000439561 SF3B2Q13435 895 aaKnown RBP10.04□□□□□ -0.8
COPB1-202ENST00000439561 CABP7Q86V35 215 aa10.04□□□□□ -0.8
COPB1-202ENST00000439561 KAT2BQ92831 832 aa10.04□□□□□ -0.8
COPB1-202ENST00000439561 P2RX5Q93086 422 aa10.04□□□□□ -0.8
COPB1-202ENST00000439561 ZIM3Q96PE6 472 aa10.04□□□□□ -0.8
COPB1-202ENST00000439561 PHF20Q9BVI0 1012 aa10.04□□□□□ -0.8
COPB1-202ENST00000439561 CXorf56Q9H5V9 222 aa10.04□□□□□ -0.8
COPB1-202ENST00000439561 CD248Q9HCU0 757 aa10.04□□□□□ -0.8
COPB1-202ENST00000439561 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.04□□□□□ -0.83e-7■■■□□ 14.9
COPB1-202ENST00000439561 PRPF3O43395 683 aaKnown RBP10.04□□□□□ -0.8
COPB1-202ENST00000439561 CCDC172P0C7W6 258 aa10.04□□□□□ -0.8
COPB1-202ENST00000439561 FCER1AP12319 257 aa10.04□□□□□ -0.8
COPB1-202ENST00000439561 TECP42680 631 aa10.04□□□□□ -0.8
COPB1-202ENST00000439561 TXKP42681 527 aa10.04□□□□□ -0.8
COPB1-202ENST00000439561 AARSP49588 968 aaKnown RBP eCLIP10.04□□□□□ -0.84e-7■□□□□ 11.3
COPB1-202ENST00000439561 GFPT1Q06210 699 aaPredicted RBP10.04□□□□□ -0.8
COPB1-202ENST00000439561 FNBP4Q8N3X1 1017 aaPredicted RBP10.04□□□□□ -0.8
COPB1-202ENST00000439561 TSEN2Q8NCE0 465 aaKnown RBP10.04□□□□□ -0.8
COPB1-202ENST00000439561 RBM12Q9NTZ6 932 aaKnown RBP10.04□□□□□ -0.8
COPB1-202ENST00000439561 GOLGA8HP0CJ92 632 aa10.03□□□□□ -0.8
COPB1-202ENST00000439561 GBP2P32456 591 aaPredicted RBP10.03□□□□□ -0.8
COPB1-202ENST00000439561 CARSP49589 748 aaKnown RBP10.03□□□□□ -0.8
COPB1-202ENST00000439561 NAPAP54920 295 aa10.03□□□□□ -0.8
COPB1-202ENST00000439561 AMPD3Q01432 767 aa10.03□□□□□ -0.8
COPB1-202ENST00000439561 LRRC41Q15345 812 aa10.03□□□□□ -0.8
COPB1-202ENST00000439561 CAVIN4Q5BKX8 364 aa10.03□□□□□ -0.8
COPB1-202ENST00000439561 PAPD7Q5XG87 772 aaKnown RBP10.03□□□□□ -0.8
COPB1-202ENST00000439561 GIGYF2Q6Y7W6 1299 aaKnown RBP10.03□□□□□ -0.8
COPB1-202ENST00000439561 MCM9Q9NXL9 1143 aa10.03□□□□□ -0.8
COPB1-202ENST00000439561 TACC3Q9Y6A5 838 aa10.03□□□□□ -0.8
COPB1-202ENST00000439561 CRYBG1Q9Y4K1 1723 aa10.03□□□□□ -0.8
COPB1-202ENST00000439561 HGSO14964 777 aaPredicted RBP10.03□□□□□ -0.8
COPB1-202ENST00000439561 CEP104O60308 925 aa10.03□□□□□ -0.8
COPB1-202ENST00000439561 RPSAP08865 295 aaKnown RBP10.03□□□□□ -0.8
COPB1-202ENST00000439561 LONP1P36776 959 aaKnown RBP10.03□□□□□ -0.8
COPB1-202ENST00000439561 ANKRD40Q6AI12 368 aa10.03□□□□□ -0.8
COPB1-202ENST00000439561 WDR59Q6PJI9 974 aa10.03□□□□□ -0.8
COPB1-202ENST00000439561 CCDC170Q8IYT3 715 aa10.03□□□□□ -0.8
COPB1-202ENST00000439561 ADSSL1Q8N142 457 aa10.03□□□□□ -0.8
COPB1-202ENST00000439561 SPATA20Q8TB22 786 aa10.03□□□□□ -0.8
COPB1-202ENST00000439561 FAM212AQ96EL1 285 aa10.03□□□□□ -0.8
COPB1-202ENST00000439561 RNPC3Q96LT9 517 aaKnown RBP10.03□□□□□ -0.8
COPB1-202ENST00000439561 TSG101Q99816 390 aa10.03□□□□□ -0.8
COPB1-202ENST00000439561 KANSL2Q9H9L4 492 aa10.03□□□□□ -0.8
COPB1-202ENST00000439561 SEPT11Q9NVA2 429 aaKnown RBP10.03□□□□□ -0.8
COPB1-202ENST00000439561 NALCNQ8IZF0 1738 aa10.03□□□□□ -0.8
COPB1-202ENST00000439561 ANO9A1A5B4 782 aa10.03□□□□□ -0.8
COPB1-202ENST00000439561 AGPSO00116 658 aa10.03□□□□□ -0.8
COPB1-202ENST00000439561 TRAF5O00463 557 aa10.03□□□□□ -0.8
COPB1-202ENST00000439561 IL2RBP14784 551 aa10.03□□□□□ -0.8
COPB1-202ENST00000439561 VEGFAP15692 232 aaPredicted RBP10.03□□□□□ -0.8
COPB1-202ENST00000439561 PLCG1P19174 1290 aa10.03□□□□□ -0.8
COPB1-202ENST00000439561 SRBD1Q8N5C6 995 aaKnown RBP10.03□□□□□ -0.8
COPB1-202ENST00000439561 CPVLQ9H3G5 476 aa10.03□□□□□ -0.8
COPB1-202ENST00000439561 GEMIN8Q9NWZ8 242 aaKnown RBP10.03□□□□□ -0.8
COPB1-202ENST00000439561 LRRC53A6NM62 1247 aa10.02□□□□□ -0.81
COPB1-202ENST00000439561 GCOM1H8Y6P7 765 aaPredicted RBP10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms