RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 EVX2Q03828 476 aa15.32■□□□□ 0.04
COL6A3-207ENST00000433762 GRAPQ13588 217 aa15.32■□□□□ 0.04
COL6A3-207ENST00000433762 NONOQ15233 471 aaKnown RBP eCLIP15.32■□□□□ 0.04
COL6A3-207ENST00000433762 WDR93Q6P2C0 686 aa15.32■□□□□ 0.04
COL6A3-207ENST00000433762 ZSCAN29Q8IWY8 852 aaPredicted RBP15.32■□□□□ 0.04
COL6A3-207ENST00000433762 TXLNBQ8N3L3 684 aa15.32■□□□□ 0.04
COL6A3-207ENST00000433762 ACRBPQ8NEB7 543 aa15.32■□□□□ 0.04
COL6A3-207ENST00000433762 NEDD1Q8NHV4 660 aa15.32■□□□□ 0.04
COL6A3-207ENST00000433762 GRAPLQ8TC17 118 aaPredicted RBP15.32■□□□□ 0.04
COL6A3-207ENST00000433762 TTYH3Q9C0H2 523 aa15.32■□□□□ 0.04
COL6A3-207ENST00000433762 TMEM60Q9H2L4 133 aa15.32■□□□□ 0.04
COL6A3-207ENST00000433762 THSD7AQ9UPZ6 1657 aa15.32■□□□□ 0.04
COL6A3-207ENST00000433762 SNED1Q8TER0 1413 aa15.32■□□□□ 0.04
COL6A3-207ENST00000433762 TTC26A0AVF1 554 aa15.32■□□□□ 0.04
COL6A3-207ENST00000433762 CYTH3O43739 400 aa15.32■□□□□ 0.04
COL6A3-207ENST00000433762 EIF3JO75822 258 aaKnown RBP15.32■□□□□ 0.04
COL6A3-207ENST00000433762 RASA1P20936 1047 aa15.32■□□□□ 0.04
COL6A3-207ENST00000433762 CYLC1P35663 651 aaPredicted RBP15.32■□□□□ 0.04
COL6A3-207ENST00000433762 BEND6Q5SZJ8 279 aaPredicted RBP15.32■□□□□ 0.04
COL6A3-207ENST00000433762 C16orf86Q6ZW13 317 aa15.32■□□□□ 0.04
COL6A3-207ENST00000433762 TRIM47Q96LD4 638 aa15.32■□□□□ 0.04
COL6A3-207ENST00000433762 ERGIC2Q96RQ1 377 aa15.32■□□□□ 0.04
COL6A3-207ENST00000433762 TMEM47Q9BQJ4 181 aa15.32■□□□□ 0.04
COL6A3-207ENST00000433762 EXOC1Q9NV70 894 aa15.32■□□□□ 0.04
COL6A3-207ENST00000433762 ANO9A1A5B4 782 aa15.31■□□□□ 0.04
COL6A3-207ENST00000433762 ADAMTS3O15072 1205 aa15.31■□□□□ 0.04
COL6A3-207ENST00000433762 INF2Q27J81 1249 aa15.31■□□□□ 0.04
COL6A3-207ENST00000433762 SLC35G1Q2M3R5 365 aa15.31■□□□□ 0.04
COL6A3-207ENST00000433762 CNNM4Q6P4Q7 775 aa15.31■□□□□ 0.04
COL6A3-207ENST00000433762 TRAPPC11Q7Z392 1133 aa15.31■□□□□ 0.04
COL6A3-207ENST00000433762 CABP7Q86V35 215 aa15.31■□□□□ 0.04
COL6A3-207ENST00000433762 SH3RF3Q8TEJ3 882 aaPredicted RBP15.31■□□□□ 0.04
COL6A3-207ENST00000433762 P2RX5Q93086 422 aa15.31■□□□□ 0.04
COL6A3-207ENST00000433762 FAM163AQ96GL9 167 aaPredicted RBP15.31■□□□□ 0.04
COL6A3-207ENST00000433762 ST7Q9NRC1 585 aa15.31■□□□□ 0.04
COL6A3-207ENST00000433762 STK17AQ9UEE5 414 aa15.31■□□□□ 0.04
COL6A3-207ENST00000433762 MYO6Q9UM54 1294 aa15.31■□□□□ 0.04
COL6A3-207ENST00000433762 OAS2P29728 719 aaKnown RBP15.31■□□□□ 0.04
COL6A3-207ENST00000433762 ZBED6P86452 979 aa15.31■□□□□ 0.04
COL6A3-207ENST00000433762 BICDL1Q6ZP65 573 aa15.31■□□□□ 0.04
COL6A3-207ENST00000433762 ARHGAP27Q6ZUM4 889 aa15.31■□□□□ 0.04
COL6A3-207ENST00000433762 SLF2Q8IX21 1173 aa15.31■□□□□ 0.04
COL6A3-207ENST00000433762 RASSF8Q8NHQ8 419 aa15.31■□□□□ 0.04
COL6A3-207ENST00000433762 EXOC4Q96A65 974 aa15.31■□□□□ 0.04
COL6A3-207ENST00000433762 TRIM9Q9C026 710 aa15.31■□□□□ 0.04
COL6A3-207ENST00000433762 EIF3CLB5ME19 914 aaKnown RBP15.3■□□□□ 0.04
COL6A3-207ENST00000433762 RNF225M0QZC1 329 aaPredicted RBP15.3■□□□□ 0.04
COL6A3-207ENST00000433762 PAPD7Q5XG87 772 aaKnown RBP15.3■□□□□ 0.04
COL6A3-207ENST00000433762 HEATR3Q7Z4Q2 680 aa15.3■□□□□ 0.04
COL6A3-207ENST00000433762 NEK8Q86SG6 692 aa15.3■□□□□ 0.04
COL6A3-207ENST00000433762 EIF3CQ99613 913 aaKnown RBP15.3■□□□□ 0.04
COL6A3-207ENST00000433762 ZNHIT6Q9NWK9 470 aaKnown RBP15.3■□□□□ 0.04
COL6A3-207ENST00000433762 L1RE1Q9UN81 338 aa15.3■□□□□ 0.04
COL6A3-207ENST00000433762 REXO2Q9Y3B8 237 aaKnown RBP15.3■□□□□ 0.04
COL6A3-207ENST00000433762 RTCBQ9Y3I0 505 aaKnown RBP15.3■□□□□ 0.04
COL6A3-207ENST00000433762 GPR75-ASB3A0A0A6YYF3 556 aa15.29■□□□□ 0.04
COL6A3-207ENST00000433762 KLRF2D3W0D1 207 aa15.29■□□□□ 0.04
COL6A3-207ENST00000433762 KRT86O43790 486 aa15.29■□□□□ 0.04
COL6A3-207ENST00000433762 ONECUT3O60422 494 aaPredicted RBP15.29■□□□□ 0.04
COL6A3-207ENST00000433762 HNRNPH3P31942 346 aaKnown RBP15.29■□□□□ 0.04
COL6A3-207ENST00000433762 CKAP4Q07065 602 aaKnown RBP15.29■□□□□ 0.04
COL6A3-207ENST00000433762 TXNRD3Q86VQ6 643 aa15.29■□□□□ 0.04
COL6A3-207ENST00000433762 RRP36Q96EU6 259 aaKnown RBP15.29■□□□□ 0.04
COL6A3-207ENST00000433762 DUSP9Q99956 384 aaKnown RBP15.29■□□□□ 0.04
COL6A3-207ENST00000433762 SLF1Q9BQI6 1058 aa15.29■□□□□ 0.04
COL6A3-207ENST00000433762 TUBGCP2Q9BSJ2 902 aa15.29■□□□□ 0.04
COL6A3-207ENST00000433762 RTFDC1Q9BY42 306 aaPredicted RBP15.29■□□□□ 0.04
COL6A3-207ENST00000433762 TSGA10Q9BZW7 698 aa15.29■□□□□ 0.04
COL6A3-207ENST00000433762 ACBD3Q9H3P7 528 aa15.29■□□□□ 0.04
COL6A3-207ENST00000433762 PVALEFA0A1B0GWK0 134 aa15.29■□□□□ 0.04
COL6A3-207ENST00000433762 TARSL2A2RTX5 802 aaKnown RBP15.29■□□□□ 0.04
COL6A3-207ENST00000433762 PLCG1P19174 1290 aa15.29■□□□□ 0.04
COL6A3-207ENST00000433762 SEPT12Q8IYM1 358 aa15.29■□□□□ 0.04
COL6A3-207ENST00000433762 CSGALNACT2Q8N6G5 542 aa15.29■□□□□ 0.04
COL6A3-207ENST00000433762 RUBCNQ92622 972 aa15.29■□□□□ 0.04
COL6A3-207ENST00000433762 LRRC27Q9C0I9 530 aa15.29■□□□□ 0.04
COL6A3-207ENST00000433762 FGFR1OPO95684 399 aaKnown RBP15.28■□□□□ 0.04
COL6A3-207ENST00000433762 NAPAP54920 295 aa15.28■□□□□ 0.04
COL6A3-207ENST00000433762 ZNF772Q68DY9 489 aaPredicted RBP15.28■□□□□ 0.04
COL6A3-207ENST00000433762 WDR59Q6PJI9 974 aa15.28■□□□□ 0.04
COL6A3-207ENST00000433762 RASGRP4Q8TDF6 673 aa15.28■□□□□ 0.04
COL6A3-207ENST00000433762 DYNLL2Q96FJ2 89 aa15.28■□□□□ 0.04
COL6A3-207ENST00000433762 PURBQ96QR8 312 aaKnown RBP15.28■□□□□ 0.04
COL6A3-207ENST00000433762 VIPAS39Q9H9C1 493 aa15.28■□□□□ 0.04
COL6A3-207ENST00000433762 LRRC37AA6NMS7 1700 aa15.28■□□□□ 0.04
COL6A3-207ENST00000433762 A0A0U1RQJ8 604 aa15.28■□□□□ 0.04
COL6A3-207ENST00000433762 USP17L3A6NCW0 530 aa15.28■□□□□ 0.04
COL6A3-207ENST00000433762 USP17L4A6NCW7 530 aa15.28■□□□□ 0.04
COL6A3-207ENST00000433762 TRIM49BA6NDI0 452 aa15.28■□□□□ 0.04
COL6A3-207ENST00000433762 SLC26A4O43511 780 aa15.28■□□□□ 0.04
COL6A3-207ENST00000433762 IPO7O95373 1038 aaKnown RBP15.28■□□□□ 0.04
COL6A3-207ENST00000433762 IL1R1P14778 569 aa15.28■□□□□ 0.04
COL6A3-207ENST00000433762 CDC25AP30304 524 aa15.28■□□□□ 0.04
COL6A3-207ENST00000433762 FXR2P51116 673 aaKnown RBP eCLIP15.28■□□□□ 0.04
COL6A3-207ENST00000433762 PMS1P54277 932 aaKnown RBP15.28■□□□□ 0.04
COL6A3-207ENST00000433762 MUM1L1Q5H9M0 696 aa15.28■□□□□ 0.04
COL6A3-207ENST00000433762 PPP1R18Q6NYC8 613 aa15.28■□□□□ 0.04
COL6A3-207ENST00000433762 USP17L1Q7RTZ2 530 aa15.28■□□□□ 0.04
COL6A3-207ENST00000433762 ATRIPQ8WXE1 791 aa15.28■□□□□ 0.04
COL6A3-207ENST00000433762 CALML4Q96GE6 196 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms