RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 EFCC1Q9HA90 598 aa12.65□□□□□ -0.38
USP4-205ENST00000431357 ABCB6Q9NP58 842 aa12.65□□□□□ -0.38
USP4-205ENST00000431357 REXO2Q9Y3B8 237 aaKnown RBP12.65□□□□□ -0.38
USP4-205ENST00000431357 MYH8P13535 1937 aa12.65□□□□□ -0.38
USP4-205ENST00000431357 TAF1P21675 1872 aa12.65□□□□□ -0.38
USP4-205ENST00000431357 KRT86O43790 486 aa12.65□□□□□ -0.38
USP4-205ENST00000431357 IPO7O95373 1038 aaKnown RBP12.65□□□□□ -0.38
USP4-205ENST00000431357 SMARCA1P28370 1054 aa12.65□□□□□ -0.38
USP4-205ENST00000431357 HOXA7P31268 230 aaPredicted RBP12.65□□□□□ -0.38
USP4-205ENST00000431357 CKAP4Q07065 602 aaKnown RBP12.65□□□□□ -0.38
USP4-205ENST00000431357 MUM1L1Q5H9M0 696 aa12.65□□□□□ -0.38
USP4-205ENST00000431357 FIGNQ5HY92 759 aa12.65□□□□□ -0.38
USP4-205ENST00000431357 TYW1BQ6NUM6 668 aa12.65□□□□□ -0.38
USP4-205ENST00000431357 CABP7Q86V35 215 aa12.65□□□□□ -0.38
USP4-205ENST00000431357 NBPF5PQ86XG9 351 aaPredicted RBP12.65□□□□□ -0.38
USP4-205ENST00000431357 P2RX5Q93086 422 aa12.65□□□□□ -0.38
USP4-205ENST00000431357 C7orf25Q9BPX7 421 aa12.65□□□□□ -0.38
USP4-205ENST00000431357 SPZ1Q9BXG8 430 aa12.65□□□□□ -0.38
USP4-205ENST00000431357 ZMYND12Q9H0C1 365 aa12.65□□□□□ -0.38
USP4-205ENST00000431357 ZCCHC17Q9NP64 241 aaKnown RBP12.65□□□□□ -0.38
USP4-205ENST00000431357 GUCA1BQ9UMX6 200 aa12.65□□□□□ -0.38
USP4-205ENST00000431357 IRS2Q9Y4H2 1338 aa12.64□□□□□ -0.39
USP4-205ENST00000431357 TULP2O00295 520 aa12.64□□□□□ -0.39
USP4-205ENST00000431357 PES1O00541 588 aaKnown RBP12.64□□□□□ -0.39
USP4-205ENST00000431357 ABL1P00519 1130 aa12.64□□□□□ -0.39
USP4-205ENST00000431357 OR52Z1P0C646 297 aa12.64□□□□□ -0.39
USP4-205ENST00000431357 RHOXF2BP0C7M4 288 aa12.64□□□□□ -0.39
USP4-205ENST00000431357 GNA11P29992 359 aa12.64□□□□□ -0.39
USP4-205ENST00000431357 PMS1P54277 932 aaKnown RBP12.64□□□□□ -0.39
USP4-205ENST00000431357 ZBED6P86452 979 aa12.64□□□□□ -0.39
USP4-205ENST00000431357 CDK17Q00537 523 aa12.64□□□□□ -0.39
USP4-205ENST00000431357 PAPD7Q5XG87 772 aaKnown RBP12.64□□□□□ -0.39
USP4-205ENST00000431357 CSGALNACT2Q8N6G5 542 aa12.64□□□□□ -0.39
USP4-205ENST00000431357 RHOXF2Q9BQY4 288 aa12.64□□□□□ -0.39
USP4-205ENST00000431357 TUBGCP2Q9BSJ2 902 aa12.64□□□□□ -0.39
USP4-205ENST00000431357 C6orf50Q9HD87 102 aa12.64□□□□□ -0.39
USP4-205ENST00000431357 ADAM21Q9UKJ8 722 aa12.64□□□□□ -0.39
USP4-205ENST00000431357 LEMD3Q9Y2U8 911 aa12.64□□□□□ -0.39
USP4-205ENST00000431357 A0A1W2PQJ5 194 aa12.64□□□□□ -0.39
USP4-205ENST00000431357 PP2D1A8MPX8 630 aa12.64□□□□□ -0.39
USP4-205ENST00000431357 EIF3CLB5ME19 914 aaKnown RBP12.64□□□□□ -0.39
USP4-205ENST00000431357 CYTH3O43739 400 aa12.64□□□□□ -0.39
USP4-205ENST00000431357 HNRNPH2P55795 449 aaKnown RBP12.64□□□□□ -0.39
USP4-205ENST00000431357 VSNL1P62760 191 aa12.64□□□□□ -0.39
USP4-205ENST00000431357 ST5P78524 1137 aa12.64□□□□□ -0.39
USP4-205ENST00000431357 MCM6Q14566 821 aa12.64□□□□□ -0.39
USP4-205ENST00000431357 NONOQ15233 471 aaKnown RBP eCLIP12.64□□□□□ -0.39
USP4-205ENST00000431357 CCDC122Q5T0U0 273 aa12.64□□□□□ -0.39
USP4-205ENST00000431357 WDR59Q6PJI9 974 aa12.64□□□□□ -0.39
USP4-205ENST00000431357 SAMD1Q6SPF0 538 aaPredicted RBP12.64□□□□□ -0.39
USP4-205ENST00000431357 KIAA1328Q86T90 577 aa12.64□□□□□ -0.39
USP4-205ENST00000431357 DYNLL2Q96FJ2 89 aa12.64□□□□□ -0.39
USP4-205ENST00000431357 EIF3CQ99613 913 aaKnown RBP12.64□□□□□ -0.39
USP4-205ENST00000431357 DUSP9Q99956 384 aaKnown RBP12.64□□□□□ -0.39
USP4-205ENST00000431357 TMEM47Q9BQJ4 181 aa12.64□□□□□ -0.39
USP4-205ENST00000431357 TTYH3Q9C0H2 523 aa12.64□□□□□ -0.39
USP4-205ENST00000431357 SAR1BQ9Y6B6 198 aa12.64□□□□□ -0.39
USP4-205ENST00000431357 ANO9A1A5B4 782 aa12.63□□□□□ -0.39
USP4-205ENST00000431357 H3BQF6 201 aa12.63□□□□□ -0.39
USP4-205ENST00000431357 KCNQ2O43526 872 aa12.63□□□□□ -0.39
USP4-205ENST00000431357 RPS6KA4O75676 772 aa12.63□□□□□ -0.39
USP4-205ENST00000431357 HERVK_113P62684 666 aa12.63□□□□□ -0.39
USP4-205ENST00000431357 PDE4DQ08499 809 aa12.63□□□□□ -0.39
USP4-205ENST00000431357 TBC1D8BQ0IIM8 1120 aa12.63□□□□□ -0.39
USP4-205ENST00000431357 MAP9Q49MG5 647 aa12.63□□□□□ -0.39
USP4-205ENST00000431357 CNNM4Q6P4Q7 775 aa12.63□□□□□ -0.39
USP4-205ENST00000431357 SH3RF3Q8TEJ3 882 aaPredicted RBP12.63□□□□□ -0.39
USP4-205ENST00000431357 TRIM9Q9C026 710 aa12.63□□□□□ -0.39
USP4-205ENST00000431357 VIPAS39Q9H9C1 493 aa12.63□□□□□ -0.39
USP4-205ENST00000431357 PDE11AQ9HCR9 933 aa12.63□□□□□ -0.39
USP4-205ENST00000431357 FLT1P17948 1338 aa12.63□□□□□ -0.39
USP4-205ENST00000431357 COL24A1Q17RW2 1714 aa12.63□□□□□ -0.39
USP4-205ENST00000431357 TARSL2A2RTX5 802 aaKnown RBP12.62□□□□□ -0.39
USP4-205ENST00000431357 USP17L3A6NCW0 530 aa12.62□□□□□ -0.39
USP4-205ENST00000431357 USP17L4A6NCW7 530 aa12.62□□□□□ -0.39
USP4-205ENST00000431357 B4DLN1 442 aa12.62□□□□□ -0.39
USP4-205ENST00000431357 ZPR1O75312 459 aa12.62□□□□□ -0.39
USP4-205ENST00000431357 PLCG1P19174 1290 aa12.62□□□□□ -0.39
USP4-205ENST00000431357 TRIM21P19474 475 aaKnown RBP12.62□□□□□ -0.39
USP4-205ENST00000431357 USP14P54578 494 aa12.62□□□□□ -0.39
USP4-205ENST00000431357 NAPAP54920 295 aa12.62□□□□□ -0.39
USP4-205ENST00000431357 CASP8Q14790 479 aa12.62□□□□□ -0.39
USP4-205ENST00000431357 HSP90B2PQ58FF3 399 aa12.62□□□□□ -0.39
USP4-205ENST00000431357 FKBP15Q5T1M5 1219 aa12.62□□□□□ -0.39
USP4-205ENST00000431357 USP17L1Q7RTZ2 530 aa12.62□□□□□ -0.39
USP4-205ENST00000431357 ZSCAN29Q8IWY8 852 aaPredicted RBP12.62□□□□□ -0.39
USP4-205ENST00000431357 JAKMIP2Q96AA8 810 aa12.62□□□□□ -0.39
USP4-205ENST00000431357 ERGIC2Q96RQ1 377 aa12.62□□□□□ -0.39
USP4-205ENST00000431357 TSGA10Q9BZW7 698 aa12.62□□□□□ -0.39
USP4-205ENST00000431357 CWC15Q9P013 229 aaKnown RBP12.62□□□□□ -0.39
USP4-205ENST00000431357 BAZ2BQ9UIF8 2168 aaKnown RBP12.62□□□□□ -0.39
USP4-205ENST00000431357 KLRF2D3W0D1 207 aa12.62□□□□□ -0.39
USP4-205ENST00000431357 hCG_1984214I3L0E3 225 aa12.62□□□□□ -0.39
USP4-205ENST00000431357 TM4SF1P30408 202 aa12.62□□□□□ -0.39
USP4-205ENST00000431357 MTIF2P46199 727 aaKnown RBP12.62□□□□□ -0.39
USP4-205ENST00000431357 SLC35G1Q2M3R5 365 aa12.62□□□□□ -0.39
USP4-205ENST00000431357 SOGA3Q5TF21 947 aa12.62□□□□□ -0.39
USP4-205ENST00000431357 NCAPH2Q6IBW4 605 aa12.62□□□□□ -0.39
USP4-205ENST00000431357 NEK8Q86SG6 692 aa12.62□□□□□ -0.39
USP4-205ENST00000431357 TXNRD3Q86VQ6 643 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms