RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 MTRQ99707 1265 aa12.31□□□□□ -0.44
LIMS1-207ENST00000422797 TUBGCP2Q9BSJ2 902 aa12.31□□□□□ -0.44
LIMS1-207ENST00000422797 TRIM34Q9BYJ4 488 aa12.31□□□□□ -0.44
LIMS1-207ENST00000422797 CCDC87Q9NVE4 849 aa12.31□□□□□ -0.44
LIMS1-207ENST00000422797 NTSR2O95665 410 aa12.3□□□□□ -0.44
LIMS1-207ENST00000422797 CPP00450 1065 aa12.3□□□□□ -0.44
LIMS1-207ENST00000422797 ATP1A1P05023 1023 aaKnown RBP12.3□□□□□ -0.44
LIMS1-207ENST00000422797 GYS2P54840 703 aa12.3□□□□□ -0.44
LIMS1-207ENST00000422797 PPFIA1Q13136 1202 aa12.3□□□□□ -0.44
LIMS1-207ENST00000422797 ALS2CLQ60I27 953 aa12.3□□□□□ -0.44
LIMS1-207ENST00000422797 CNNM4Q6P4Q7 775 aa12.3□□□□□ -0.44
LIMS1-207ENST00000422797 EMBQ6PCB8 327 aa12.3□□□□□ -0.44
LIMS1-207ENST00000422797 WDR59Q6PJI9 974 aa12.3□□□□□ -0.44
LIMS1-207ENST00000422797 LRRC31Q6UY01 552 aa12.3□□□□□ -0.44
LIMS1-207ENST00000422797 CCDC84Q86UT8 332 aaPredicted RBP12.3□□□□□ -0.44
LIMS1-207ENST00000422797 SPATS2Q86XZ4 545 aaKnown RBP12.3□□□□□ -0.44
LIMS1-207ENST00000422797 ANKRD18AQ8IVF6 992 aa12.3□□□□□ -0.44
LIMS1-207ENST00000422797 CSGALNACT2Q8N6G5 542 aa12.3□□□□□ -0.44
LIMS1-207ENST00000422797 P2RX5Q93086 422 aa12.3□□□□□ -0.44
LIMS1-207ENST00000422797 AKT1S1Q96B36 256 aa12.3□□□□□ -0.44
LIMS1-207ENST00000422797 C7orf25Q9BPX7 421 aa12.3□□□□□ -0.44
LIMS1-207ENST00000422797 KAT14Q9H8E8 782 aa12.3□□□□□ -0.44
LIMS1-207ENST00000422797 NHEJ1Q9H9Q4 299 aaPredicted RBP12.3□□□□□ -0.44
LIMS1-207ENST00000422797 LUC7LQ9NQ29 371 aaKnown RBP12.3□□□□□ -0.44
LIMS1-207ENST00000422797 TCP11L1Q9NUJ3 509 aa12.3□□□□□ -0.44
LIMS1-207ENST00000422797 ABCF2Q9UG63 623 aa12.3□□□□□ -0.44
LIMS1-207ENST00000422797 GDAQ9Y2T3 454 aa12.3□□□□□ -0.44
LIMS1-207ENST00000422797 SLIT2O94813 1529 aa12.3□□□□□ -0.44
LIMS1-207ENST00000422797 ATXN2Q99700 1313 aaKnown RBP12.29□□□□□ -0.44
LIMS1-207ENST00000422797 GOLGA6BA6NDN3 693 aa12.29□□□□□ -0.44
LIMS1-207ENST00000422797 RNF225M0QZC1 329 aaPredicted RBP12.29□□□□□ -0.44
LIMS1-207ENST00000422797 KLRC4O43908 158 aa12.29□□□□□ -0.44
LIMS1-207ENST00000422797 N4BP1O75113 896 aaKnown RBP12.29□□□□□ -0.44
LIMS1-207ENST00000422797 SYF2O95926 243 aaKnown RBP12.29□□□□□ -0.44
LIMS1-207ENST00000422797 EPB41P11171 864 aaKnown RBP12.29□□□□□ -0.44
LIMS1-207ENST00000422797 IDEP14735 1019 aa12.29□□□□□ -0.44
LIMS1-207ENST00000422797 CDC25AP30304 524 aa12.29□□□□□ -0.44
LIMS1-207ENST00000422797 TBC1D8BQ0IIM8 1120 aa12.29□□□□□ -0.44
LIMS1-207ENST00000422797 IL17AQ16552 155 aa12.29□□□□□ -0.44
LIMS1-207ENST00000422797 TTC31Q49AM3 519 aaPredicted RBP12.29□□□□□ -0.44
LIMS1-207ENST00000422797 KRT25Q7Z3Z0 450 aa12.29□□□□□ -0.44
LIMS1-207ENST00000422797 CERS3Q8IU89 383 aa12.29□□□□□ -0.44
LIMS1-207ENST00000422797 C10orf67Q8IYJ2 551 aa12.29□□□□□ -0.44
LIMS1-207ENST00000422797 AENQ8WTP8 325 aaKnown RBP12.29□□□□□ -0.44
LIMS1-207ENST00000422797 CCDC42Q96M95 316 aa12.29□□□□□ -0.44
LIMS1-207ENST00000422797 MMS19Q96T76 1030 aa12.29□□□□□ -0.44
LIMS1-207ENST00000422797 CDCA7Q9BWT1 371 aaPredicted RBP12.29□□□□□ -0.44
LIMS1-207ENST00000422797 LRRC27Q9C0I9 530 aa12.29□□□□□ -0.44
LIMS1-207ENST00000422797 NUCKS1Q9H1E3 243 aaKnown RBP12.29□□□□□ -0.44
LIMS1-207ENST00000422797 BSDC1Q9NW68 430 aaPredicted RBP12.29□□□□□ -0.44
LIMS1-207ENST00000422797 SNX12Q9UMY4 172 aa12.29□□□□□ -0.44
LIMS1-207ENST00000422797 A0A1B0GUL6 1792 aa12.29□□□□□ -0.44
LIMS1-207ENST00000422797 COL14A1Q05707 1796 aaKnown RBP12.29□□□□□ -0.44
LIMS1-207ENST00000422797 A0A087WUV0 522 aaPredicted RBP12.28□□□□□ -0.44
LIMS1-207ENST00000422797 PES1O00541 588 aaKnown RBP12.28□□□□□ -0.44
LIMS1-207ENST00000422797 WNT7AO00755 349 aa12.28□□□□□ -0.44
LIMS1-207ENST00000422797 LCA5LO95447 670 aa12.28□□□□□ -0.44
LIMS1-207ENST00000422797 MTIF2P46199 727 aaKnown RBP12.28□□□□□ -0.44
LIMS1-207ENST00000422797 EPHB4P54760 987 aa12.28□□□□□ -0.44
LIMS1-207ENST00000422797 GRM4Q14833 912 aa12.28□□□□□ -0.44
LIMS1-207ENST00000422797 NAALADL2Q58DX5 795 aa12.28□□□□□ -0.44
LIMS1-207ENST00000422797 SPTY2D1Q68D10 685 aaPredicted RBP12.28□□□□□ -0.44
LIMS1-207ENST00000422797 ADGRA1Q86SQ6 560 aa12.28□□□□□ -0.44
LIMS1-207ENST00000422797 STAMQ92783 540 aa12.28□□□□□ -0.44
LIMS1-207ENST00000422797 SLC4A9Q96Q91 983 aa12.28□□□□□ -0.44
LIMS1-207ENST00000422797 SELENOOQ9BVL4 669 aa12.28□□□□□ -0.44
LIMS1-207ENST00000422797 SUGCTQ9HAC7 445 aa12.28□□□□□ -0.44
LIMS1-207ENST00000422797 RSPH14Q9UHP6 348 aa12.28□□□□□ -0.44
LIMS1-207ENST00000422797 HYOU1Q9Y4L1 999 aa12.28□□□□□ -0.44
LIMS1-207ENST00000422797 ROBO3Q96MS0 1386 aa12.28□□□□□ -0.44
LIMS1-207ENST00000422797 ZC3H4Q9UPT8 1303 aaKnown RBP12.28□□□□□ -0.44
LIMS1-207ENST00000422797 MYH8P13535 1937 aa12.28□□□□□ -0.44
LIMS1-207ENST00000422797 CASZ1Q86V15 1759 aa12.28□□□□□ -0.44
LIMS1-207ENST00000422797 GOLGA6CA6NDK9 693 aa12.27□□□□□ -0.44
LIMS1-207ENST00000422797 TSPY2A6NKD2 308 aa12.27□□□□□ -0.44
LIMS1-207ENST00000422797 USP17L12C9JPN9 530 aa12.27□□□□□ -0.44
LIMS1-207ENST00000422797 USP17L21D6R901 530 aa12.27□□□□□ -0.44
LIMS1-207ENST00000422797 M0R2N6 131 aa12.27□□□□□ -0.44
LIMS1-207ENST00000422797 CAMTA2O94983 1202 aa12.27□□□□□ -0.44
LIMS1-207ENST00000422797 ADAMTS2O95450 1211 aa12.27□□□□□ -0.44
LIMS1-207ENST00000422797 GOLGA6DP0CG33 693 aa12.27□□□□□ -0.44
LIMS1-207ENST00000422797 PAFAH1B1P43034 410 aa12.27□□□□□ -0.44
LIMS1-207ENST00000422797 SF3B3Q15393 1217 aaKnown RBP12.27□□□□□ -0.44
LIMS1-207ENST00000422797 CLEC4GQ6UXB4 293 aa12.27□□□□□ -0.44
LIMS1-207ENST00000422797 RNF10Q8N5U6 811 aaKnown RBP12.27□□□□□ -0.44
LIMS1-207ENST00000422797 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.27□□□□□ -0.443e-6■■■■■ 50.8
LIMS1-207ENST00000422797 CAVIN3Q969G5 261 aa12.27□□□□□ -0.44
LIMS1-207ENST00000422797 CNOT6LQ96LI5 555 aaKnown RBP12.27□□□□□ -0.44
LIMS1-207ENST00000422797 NOC4LQ9BVI4 516 aaKnown RBP12.27□□□□□ -0.44
LIMS1-207ENST00000422797 GOLGA6AQ9NYA3 693 aa12.27□□□□□ -0.44
LIMS1-207ENST00000422797 PLAGL2Q9UPG8 496 aa12.27□□□□□ -0.44
LIMS1-207ENST00000422797 KIAA1551Q9HCM1 1747 aa12.27□□□□□ -0.44
LIMS1-207ENST00000422797 XIRP1Q702N8 1843 aaKnown RBP12.27□□□□□ -0.45
LIMS1-207ENST00000422797 PVALEFA0A1B0GWK0 134 aa12.27□□□□□ -0.45
LIMS1-207ENST00000422797 SHTN1A0MZ66 631 aa12.27□□□□□ -0.45
LIMS1-207ENST00000422797 B4DLN1 442 aa12.27□□□□□ -0.45
LIMS1-207ENST00000422797 hCG_1984214I3L0E3 225 aa12.27□□□□□ -0.45
LIMS1-207ENST00000422797 PJA2O43164 708 aa12.27□□□□□ -0.45
LIMS1-207ENST00000422797 SMARCA1P28370 1054 aa12.27□□□□□ -0.45
LIMS1-207ENST00000422797 CABP7Q86V35 215 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms