RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 GIMAP8Q8ND71 665 aaPredicted RBP23.09■■□□□ 1.29
CLK3-202ENST00000395066 SMARCC1Q92922 1105 aaPredicted RBP23.09■■□□□ 1.29
CLK3-202ENST00000395066 DNAJC7Q99615 494 aa23.09■■□□□ 1.29
CLK3-202ENST00000395066 TUBGCP2Q9BSJ2 902 aa23.09■■□□□ 1.29
CLK3-202ENST00000395066 LACRTQ9GZZ8 138 aa23.09■■□□□ 1.29
CLK3-202ENST00000395066 SH3GLB2Q9NR46 395 aa23.09■■□□□ 1.29
CLK3-202ENST00000395066 BARHL2Q9NY43 387 aa23.09■■□□□ 1.29
CLK3-202ENST00000395066 FAN1Q9Y2M0 1017 aa23.09■■□□□ 1.29
CLK3-202ENST00000395066 FLT1P17948 1338 aa23.09■■□□□ 1.29
CLK3-202ENST00000395066 CYP27A1Q02318 531 aa23.09■■□□□ 1.29
CLK3-202ENST00000395066 CASP8Q14790 479 aa23.09■■□□□ 1.29
CLK3-202ENST00000395066 ANKRD40Q6AI12 368 aa23.09■■□□□ 1.29
CLK3-202ENST00000395066 MAGEC2Q9UBF1 373 aaPredicted RBP23.09■■□□□ 1.29
CLK3-202ENST00000395066 COL5A3P25940 1745 aaPredicted RBP23.08■■□□□ 1.29
CLK3-202ENST00000395066 RHOBTB3O94955 611 aa23.08■■□□□ 1.29
CLK3-202ENST00000395066 TRIM21P19474 475 aaKnown RBP23.08■■□□□ 1.29
CLK3-202ENST00000395066 PDE4DQ08499 809 aa23.08■■□□□ 1.29
CLK3-202ENST00000395066 FAM98CQ17RN3 349 aaKnown RBP23.08■■□□□ 1.29
CLK3-202ENST00000395066 USP17L2Q6R6M4 530 aa23.08■■□□□ 1.29
CLK3-202ENST00000395066 CABP7Q86V35 215 aa23.08■■□□□ 1.29
CLK3-202ENST00000395066 ZNF444Q8N0Y2 327 aaPredicted RBP23.08■■□□□ 1.29
CLK3-202ENST00000395066 PCMTD1Q96MG8 357 aaPredicted RBP23.08■■□□□ 1.29
CLK3-202ENST00000395066 MMS19Q96T76 1030 aa23.08■■□□□ 1.29
CLK3-202ENST00000395066 HINFPQ9BQA5 517 aa23.08■■□□□ 1.29
CLK3-202ENST00000395066 ANKRD2Q9GZV1 360 aa23.08■■□□□ 1.29
CLK3-202ENST00000395066 MYO1AQ9UBC5 1043 aa23.08■■□□□ 1.29
CLK3-202ENST00000395066 CCDC88AQ3V6T2 1871 aa23.08■■□□□ 1.28
CLK3-202ENST00000395066 KLRF2D3W0D1 207 aa23.08■■□□□ 1.28
CLK3-202ENST00000395066 TM4SF1P30408 202 aa23.08■■□□□ 1.28
CLK3-202ENST00000395066 TECP42680 631 aa23.08■■□□□ 1.28
CLK3-202ENST00000395066 NFIXQ14938 502 aa23.08■■□□□ 1.28
CLK3-202ENST00000395066 SRLQ86TD4 932 aa23.08■■□□□ 1.28
CLK3-202ENST00000395066 CAPN11Q9UMQ6 739 aa23.08■■□□□ 1.28
CLK3-202ENST00000395066 THRAP3Q9Y2W1 955 aaKnown RBP23.08■■□□□ 1.28
CLK3-202ENST00000395066 ZMYND10O75800 440 aa23.07■■□□□ 1.28
CLK3-202ENST00000395066 EEF1GP26641 437 aaKnown RBP23.07■■□□□ 1.28
CLK3-202ENST00000395066 NAPAP54920 295 aa23.07■■□□□ 1.28
CLK3-202ENST00000395066 ASIC1P78348 528 aa23.07■■□□□ 1.28
CLK3-202ENST00000395066 KCNB1Q14721 858 aa23.07■■□□□ 1.28
CLK3-202ENST00000395066 C10orf67Q8IYJ2 551 aa23.07■■□□□ 1.28
CLK3-202ENST00000395066 THAP9Q9H5L6 903 aa23.07■■□□□ 1.28
CLK3-202ENST00000395066 SPATA31A5Q5VU36 1347 aa23.07■■□□□ 1.28
CLK3-202ENST00000395066 SPATA31A7Q8IWB4 1347 aa23.07■■□□□ 1.28
CLK3-202ENST00000395066 GNPATO15228 680 aa23.07■■□□□ 1.28
CLK3-202ENST00000395066 TUBBP07437 444 aa23.07■■□□□ 1.28
CLK3-202ENST00000395066 IVLP07476 585 aa23.07■■□□□ 1.28
CLK3-202ENST00000395066 STIM1Q13586 685 aa23.07■■□□□ 1.28
CLK3-202ENST00000395066 CNOT6LQ96LI5 555 aaKnown RBP23.07■■□□□ 1.28
CLK3-202ENST00000395066 GDAP1L1Q96MZ0 367 aa23.07■■□□□ 1.28
CLK3-202ENST00000395066 TRIM66O15016 1216 aa23.06■■□□□ 1.28
CLK3-202ENST00000395066 RASA1P20936 1047 aa23.06■■□□□ 1.28
CLK3-202ENST00000395066 FAM182BQ5T319 152 aa23.06■■□□□ 1.28
CLK3-202ENST00000395066 KIAA1328Q86T90 577 aa23.06■■□□□ 1.28
CLK3-202ENST00000395066 CCSER1Q9C0I3 900 aa23.06■■□□□ 1.28
CLK3-202ENST00000395066 RRP15Q9Y3B9 282 aaKnown RBP23.06■■□□□ 1.28
CLK3-202ENST00000395066 LRRIQ3A6PVS8 624 aaPredicted RBP23.06■■□□□ 1.28
CLK3-202ENST00000395066 ZNF185O15231 689 aa23.06■■□□□ 1.28
CLK3-202ENST00000395066 TBC1D8BQ0IIM8 1120 aa23.06■■□□□ 1.28
CLK3-202ENST00000395066 HSP90B2PQ58FF3 399 aa23.06■■□□□ 1.28
CLK3-202ENST00000395066 TRAPPC11Q7Z392 1133 aa23.06■■□□□ 1.28
CLK3-202ENST00000395066 CCDC148Q8NFR7 591 aa23.06■■□□□ 1.28
CLK3-202ENST00000395066 CCDC102AQ96A19 550 aa23.06■■□□□ 1.28
CLK3-202ENST00000395066 TRIM9Q9C026 710 aa23.06■■□□□ 1.28
CLK3-202ENST00000395066 EXOC1Q9NV70 894 aa23.06■■□□□ 1.28
CLK3-202ENST00000395066 IRS2Q9Y4H2 1338 aa23.06■■□□□ 1.28
CLK3-202ENST00000395066 PALM3A6NDB9 673 aaPredicted RBP23.05■■□□□ 1.28
CLK3-202ENST00000395066 PLEKP08567 350 aaPredicted RBP23.05■■□□□ 1.28
CLK3-202ENST00000395066 MAPK8IP2Q13387 824 aaPredicted RBP23.05■■□□□ 1.28
CLK3-202ENST00000395066 TSR1Q2NL82 804 aaKnown RBP23.05■■□□□ 1.28
CLK3-202ENST00000395066 FAM71BQ8TC56 605 aa23.05■■□□□ 1.28
CLK3-202ENST00000395066 TMEM260Q9NX78 707 aa23.05■■□□□ 1.28
CLK3-202ENST00000395066 KDM4FA0A1W2PPD8 638 aa23.05■■□□□ 1.28
CLK3-202ENST00000395066 A0A1W2PQC6 194 aa23.05■■□□□ 1.28
CLK3-202ENST00000395066 MACROD2A1Z1Q3 448 aa23.05■■□□□ 1.28
CLK3-202ENST00000395066 SRGNP10124 158 aa23.05■■□□□ 1.28
CLK3-202ENST00000395066 TTYH3Q9C0H2 523 aa23.05■■□□□ 1.28
CLK3-202ENST00000395066 SMCO2A6NFE2 343 aa23.04■■□□□ 1.28
CLK3-202ENST00000395066 OR52Z1P0C646 297 aa23.04■■□□□ 1.28
CLK3-202ENST00000395066 MTIF2P46199 727 aaKnown RBP23.04■■□□□ 1.28
CLK3-202ENST00000395066 KRT26Q7Z3Y9 468 aa23.04■■□□□ 1.28
CLK3-202ENST00000395066 SMCR8Q8TEV9 937 aaPredicted RBP23.04■■□□□ 1.28
CLK3-202ENST00000395066 P2RX5Q93086 422 aa23.04■■□□□ 1.28
CLK3-202ENST00000395066 JAKMIP2Q96AA8 810 aa23.04■■□□□ 1.28
CLK3-202ENST00000395066 ZFP91Q96JP5 570 aaPredicted RBP23.04■■□□□ 1.28
CLK3-202ENST00000395066 UBA5Q9GZZ9 404 aa23.04■■□□□ 1.28
CLK3-202ENST00000395066 NHEJ1Q9H9Q4 299 aaPredicted RBP23.04■■□□□ 1.28
CLK3-202ENST00000395066 SLC39A2Q9NP94 309 aa23.04■■□□□ 1.28
CLK3-202ENST00000395066 BIN2Q9UBW5 565 aaPredicted RBP23.04■■□□□ 1.28
CLK3-202ENST00000395066 NARFQ9UHQ1 456 aa23.04■■□□□ 1.28
CLK3-202ENST00000395066 ZPR1O75312 459 aa23.04■■□□□ 1.28
CLK3-202ENST00000395066 DNM2P50570 870 aa23.04■■□□□ 1.28
CLK3-202ENST00000395066 POTEDQ86YR6 584 aa23.04■■□□□ 1.28
CLK3-202ENST00000395066 GSPT2Q8IYD1 628 aaKnown RBP23.04■■□□□ 1.28
CLK3-202ENST00000395066 NYXQ9GZU5 481 aa23.04■■□□□ 1.28
CLK3-202ENST00000395066 HAUS4Q9H6D7 363 aa23.04■■□□□ 1.28
CLK3-202ENST00000395066 TCP11L1Q9NUJ3 509 aa23.04■■□□□ 1.28
CLK3-202ENST00000395066 RPS6KA5O75582 802 aa23.03■■□□□ 1.28
CLK3-202ENST00000395066 GNAQP50148 359 aa23.03■■□□□ 1.28
CLK3-202ENST00000395066 SPTY2D1Q68D10 685 aaPredicted RBP23.03■■□□□ 1.28
CLK3-202ENST00000395066 DAGLBQ8NCG7 672 aa23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms