RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 POLR2BP30876 1174 aaKnown RBP5.05□□□□□ -1.6
SCN1A-202ENST00000375405 CCT5P48643 541 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 KRT6CP48668 564 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 CDC37Q16543 378 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-202ENST00000375405 IFIT1BQ5T764 474 aaKnown RBP5.05□□□□□ -1.6
SCN1A-202ENST00000375405 ANKRD20A3Q5VUR7 823 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 SRLQ86TD4 932 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 ZC3H18Q86VM9 953 aaKnown RBP5.05□□□□□ -1.6
SCN1A-202ENST00000375405 MICU3Q86XE3 530 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 VSIG1Q86XK7 387 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 NEK11Q8NG66 645 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 NLRP7Q8WX94 980 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 GLG1Q92896 1179 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 CENPKQ9BS16 269 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 SLC26A6Q9BXS9 759 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 EPN3Q9H201 632 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 CCDC144AA2RUR9 1427 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 FAM47E-STBD1D6RA91 191 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 TMCC1O94876 653 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 MCM4P33991 863 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 CYLC1P35663 651 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-202ENST00000375405 PER3P56645 1201 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 PRR23CQ6ZRP0 262 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 ARHGAP27Q6ZUM4 889 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 TAB3Q8N5C8 712 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-202ENST00000375405 UBE2Q2Q8WVN8 375 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 TUBGCP2Q9BSJ2 902 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 CARD9Q9H257 536 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 INTUQ9ULD6 942 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 WDR33Q9C0J8 1336 aaKnown RBP5.05□□□□□ -1.6
SCN1A-202ENST00000375405 SMCO3A2RU48 225 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 EIF2S3P41091 472 aaKnown RBP5.05□□□□□ -1.6
SCN1A-202ENST00000375405 ALDH18A1P54886 795 aaKnown RBP5.05□□□□□ -1.6
SCN1A-202ENST00000375405 TNFAIP2Q03169 654 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 TMEM154Q6P9G4 183 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 CAPN12Q6ZSI9 719 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 CPXCR1Q8N123 301 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 NRBF2Q96F24 287 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 TRIM31Q9BZY9 425 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 GPCPD1Q9NPB8 672 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 AFF4Q9UHB7 1163 aaKnown RBP5.05□□□□□ -1.6
SCN1A-202ENST00000375405 ASIC3Q9UHC3 531 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 SLC12A6Q9UHW9 1150 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 UTP11Q9Y3A2 253 aaKnown RBP5.05□□□□□ -1.6
SCN1A-202ENST00000375405 CFAP69A5D8W1 941 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 RASSF10A6NK89 507 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 MAP3K13O43283 966 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 ABL2P42684 1182 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 METAP2P50579 478 aaKnown RBP eCLIP5.05□□□□□ -1.6
SCN1A-202ENST00000375405 BFSP2Q13515 415 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 STXBP2Q15833 593 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 MEI1Q5TIA1 1274 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 CEP85Q6P2H3 762 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 CCDC105Q8IYK2 499 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 TCP11L2Q8N4U5 519 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 SPATA5Q8NB90 893 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 ACSBG1Q96GR2 724 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 GDAP1L1Q96MZ0 367 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 THTPAQ9BU02 230 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 BACH2Q9BYV9 841 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 ANO10Q9NW15 660 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 H2AFY2Q9P0M6 372 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-202ENST00000375405 JAG2Q9Y219 1238 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 DARSP14868 501 aaKnown RBP5.05□□□□□ -1.6
SCN1A-202ENST00000375405 NFKBIAP25963 317 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 RRAGBQ5VZM2 374 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 ANKS3Q6ZW76 656 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 FCHSD1Q86WN1 690 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 CRNKL1Q9BZJ0 848 aaKnown RBP5.05□□□□□ -1.6
SCN1A-202ENST00000375405 Q9H521 79 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 VAV3Q9UKW4 847 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 SNX6Q9UNH7 406 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 LRCH1Q9Y2L9 728 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 F13A1P00488 732 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 NNMTP40261 264 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 SLC16A1P53985 500 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 IMPG1Q17R60 797 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 SETDB2Q96T68 719 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 PLIN2Q99541 437 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 ZC3H12CQ9C0D7 883 aaKnown RBP5.05□□□□□ -1.6
SCN1A-202ENST00000375405 N6AMT1Q9Y5N5 214 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 CSADQ9Y600 493 aa5.05□□□□□ -1.6
SCN1A-202ENST00000375405 PRR23AA6NEV1 266 aa5.04□□□□□ -1.6
SCN1A-202ENST00000375405 A8MXQ7 604 aa5.04□□□□□ -1.6
SCN1A-202ENST00000375405 NBPF26B4DH59 902 aa5.04□□□□□ -1.6
SCN1A-202ENST00000375405 PI4K2BG5E9Z4 385 aa5.04□□□□□ -1.6
SCN1A-202ENST00000375405 H7C1W4 665 aa5.04□□□□□ -1.6
SCN1A-202ENST00000375405 MAFKO60675 156 aa5.04□□□□□ -1.6
SCN1A-202ENST00000375405 POTEIP0CG38 1075 aa5.04□□□□□ -1.6
SCN1A-202ENST00000375405 TCP11X2Q5H9J9 407 aa5.04□□□□□ -1.6
SCN1A-202ENST00000375405 ADCK2Q7Z695 626 aa5.04□□□□□ -1.6
SCN1A-202ENST00000375405 MAP7D3Q8IWC1 876 aa5.04□□□□□ -1.6
SCN1A-202ENST00000375405 PI4K2BQ8TCG2 481 aa5.04□□□□□ -1.6
SCN1A-202ENST00000375405 NAPGQ99747 312 aaPredicted RBP5.04□□□□□ -1.6
SCN1A-202ENST00000375405 ADAM21Q9UKJ8 722 aa5.04□□□□□ -1.6
SCN1A-202ENST00000375405 IQSEC3Q9UPP2 1182 aaPredicted RBP5.04□□□□□ -1.6
SCN1A-202ENST00000375405 FARP1Q9Y4F1 1045 aaPredicted RBP5.04□□□□□ -1.6
SCN1A-202ENST00000375405 CCDC88BA6NC98 1476 aa5.04□□□□□ -1.6
SCN1A-202ENST00000375405 E2F6O75461 281 aa5.04□□□□□ -1.6
SCN1A-202ENST00000375405 EPB42P16452 691 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms